mRNA_M-pyrifera_M_contig7062.16855.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7062.16855.1
Unique NamemRNA_M-pyrifera_M_contig7062.16855.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7062.16855.1 vs. uniprot
Match: D8LGE4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE4_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.250e-44
Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = 1 
Query:    1 ESLEREGVSLRWANHRLHGASIGLRQRHDATMDTLEGRSDGEARAVMLRLVRESREMNGELAAYLSRTSMLNLGMVEMLQKSRDGRAALMMRSAAEILVKGLANAEEEVQALKANLKEVERQRDDFKTLLAKTNSELKASQAYDQLNKAVG 453
            E L +E   LRW  HRL G+ I L  R + T  TLE + D EARA MLRL +E +++N  LAA L+R SM+N  +VE+L+KS DG+AALMMR AAE+LVKGLANAEEEV +LKA   E+ERQRD +K LLA+TNSEL  S+A+ Q+++A+G
Sbjct:   16 EGLVQESTDLRWEGHRLQGSHIELSLRFEDTTRTLESKGDREARAAMLRLAKEFKQLNDVLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLARTNSELDVSRAHAQISEALG 166
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BLAST of mRNA_M-pyrifera_M_contig7062.16855.1 vs. uniprot
Match: A0A6H5KZE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE5_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 3.080e-42
Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 1 
Query:    1 ESLEREGVSLRWANHRLHGASIGLRQRHDATMDTLEGRSDGEARAVMLRLVRESREMNGELAAYLSRTSMLNLGMVEMLQKSRDGRAALMMRSAAEILVKGLANAEEEVQALKANLKEVERQRDDFKTLLAKTNSELKASQAYDQLNKAVG 453
            E L +E   LRW  HRL GA I L  R + T  TLE + D EARA MLRL +E +++N  LAA L+R SM+N  +VE+L+KS DG+AALMMR AAE+LVKGLANAEEEV +LKA   E+ERQRD +K LLA TNSEL  S+A+ Q+++A+G
Sbjct:   16 EGLVQESTDLRWEGHRLQGAHIELSLRFEDTTQTLESKGDREARAAMLRLAKEFKQLNDGLAAKLARISMINRTLVEILRKSEDGQAALMMRKAAELLVKGLANAEEEVFSLKAKAGELERQRDHYKALLATTNSELDISRAHAQISEALG 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7062.16855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE4_ECTSI1.250e-4457.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE5_9PHAE3.080e-4258.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7062contigM-pyrifera_M_contig7062:4355..5331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003740.1
Exons2
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.2423172-CDS-M-pyrifera_M_contig7062:4354..46541622816599.2423172-CDS-M-pyrifera_M_contig7062:4354..4654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7062 4355..4654 +
1692278069.6590433-CDS-M-pyrifera_M_contig7062:4354..46541692278069.6590433-CDS-M-pyrifera_M_contig7062:4354..4654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7062 4355..4654 +
1622816599.2554474-CDS-M-pyrifera_M_contig7062:5178..53311622816599.2554474-CDS-M-pyrifera_M_contig7062:5178..5331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7062 5179..5331 +
1692278069.6701076-CDS-M-pyrifera_M_contig7062:5178..53311692278069.6701076-CDS-M-pyrifera_M_contig7062:5178..5331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7062 5179..5331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7062.16855.1prot_M-pyrifera_M_contig7062.16855.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7062 4355..5331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7062.16855.1

>prot_M-pyrifera_M_contig7062.16855.1 ID=prot_M-pyrifera_M_contig7062.16855.1|Name=mRNA_M-pyrifera_M_contig7062.16855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
ESLEREGVSLRWANHRLHGASIGLRQRHDATMDTLEGRSDGEARAVMLRL
VRESREMNGELAAYLSRTSMLNLGMVEMLQKSRDGRAALMMRSAAEILVK
GLANAEEEVQALKANLKEVERQRDDFKTLLAKTNSELKASQAYDQLNKAV
G
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mRNA from alignment at M-pyrifera_M_contig7062:4355..5331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7062.16855.1 ID=mRNA_M-pyrifera_M_contig7062.16855.1|Name=mRNA_M-pyrifera_M_contig7062.16855.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=977bp|location=Sequence derived from alignment at M-pyrifera_M_contig7062:4355..5331+ (Macrocystis pyrifera P11B4 male)
GAGAGCCTCGAACGGGAAGGCGTCAGTCTGCGATGGGCCAACCATCGCCT
GCACGGGGCCAGCATCGGACTGCGCCAGCGTCACGACGCCACGATGGACA
CGCTGGAGGGCAGGAGCGACGGCGAGGCGAGGGCGGTGATGCTGAGGCTC
GTCAGGGAGTCCAGAGAGATGAACGGGGAGCTGGCCGCGTACCTCTCGAG
AACGTCCATGCTCAACCTTGGCATGGTGGAAATGCTGCAGAAGAGCAGGG
ACGGGCGCGCCGCGCTGATGATGCGCAGCGCCGCTGAGATTTTGGTGAAG
GTGCGGTCGGACGTATCGTACTGTAACCCTATGTCTCTCCCTTACCCTAA
CCATGTTCATGGGTTGCATTTCTTGTACATTTGTGAGGTTGGTTTCAGCG
ATGTCTGCGTGTTTTGTGTCGTATTACGGGGGACCATAGTAAATAGGACC
AAATATTGTTAGTAAAAATGTATAGGTTTTTGCGTGTACCGTAGGTCCTA
TTTACTATGGTCCTCCGTAATAGTCCTATTCCGGGACACGTGGTATTGAG
GGCTACCAGGTGCGTATTACCATACAACACCCATTCTGAGTACGACCGTT
TCTGCTGTCTAATTAGACGAGTGTTGCCGTGCTTTTGCTACAAAGACTAG
GTTTGTTTCTTTAGCCATCGGGTCATTCCGGAAAGGTCAAGAATCTCACG
TTTATCCATGATCATGCACGTTTTGTTAGAGGTGTGCTTTCCTCTCGCCC
ACGTGGCATCGTATCGGAAACAGCCCGTTCGCCTCCCCTCCCCCTCCCCC
CTCCCCCCGCCGTGGCGACTTCAGGGACTAGCGAACGCGGAGGAAGAAGT
CCAGGCCCTCAAGGCCAACTTAAAAGAGGTCGAGAGGCAGCGCGACGACT
TCAAGACCCTCCTGGCCAAGACCAACTCAGAGCTCAAGGCCTCCCAGGCC
TACGACCAGCTTAACAAGGCAGTTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7062:4355..5331+

>mRNA_M-pyrifera_M_contig7062.16855.1 ID=mRNA_M-pyrifera_M_contig7062.16855.1|Name=mRNA_M-pyrifera_M_contig7062.16855.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig7062:4355..5331+ (Macrocystis pyrifera P11B4 male)
GAGAGCCTCGAACGGGAAGGCGTCAGTCTGCGATGGGCCAACCATCGCCT
GCACGGGGCCAGCATCGGACTGCGCCAGCGTCACGACGCCACGATGGACA
CGCTGGAGGGCAGGAGCGACGGCGAGGCGAGGGCGGTGATGCTGAGGCTC
GTCAGGGAGTCCAGAGAGATGAACGGGGAGCTGGCCGCGTACCTCTCGAG
AACGTCCATGCTCAACCTTGGCATGGTGGAAATGCTGCAGAAGAGCAGGG
ACGGGCGCGCCGCGCTGATGATGCGCAGCGCCGCTGAGATTTTGGTGAAG
GAGAGCCTCGAACGGGAAGGCGTCAGTCTGCGATGGGCCAACCATCGCCT
GCACGGGGCCAGCATCGGACTGCGCCAGCGTCACGACGCCACGATGGACA
CGCTGGAGGGCAGGAGCGACGGCGAGGCGAGGGCGGTGATGCTGAGGCTC
GTCAGGGAGTCCAGAGAGATGAACGGGGAGCTGGCCGCGTACCTCTCGAG
AACGTCCATGCTCAACCTTGGCATGGTGGAAATGCTGCAGAAGAGCAGGG
ACGGGCGCGCCGCGCTGATGATGCGCAGCGCCGCTGAGATTTTGGTGAAG
GGACTAGCGAACGCGGAGGAAGAAGTCCAGGCCCTCAAGGCCAACTTAAA
AGAGGTCGAGAGGCAGCGCGACGACTTCAAGACCCTCCTGGCCAAGACCA
ACTCAGAGCTCAAGGCCTCCCAGGCCTACGACCAGCTTAACAAGGCAGTT
GGGGGACTAGCGAACGCGGAGGAAGAAGTCCAGGCCCTCAAGGCCAACTT
AAAAGAGGTCGAGAGGCAGCGCGACGACTTCAAGACCCTCCTGGCCAAGA
CCAACTCAGAGCTCAAGGCCTCCCAGGCCTACGACCAGCTTAACAAGGCA
GTTGGG
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