mRNA_M-pyrifera_M_contig70443.16817.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70443.16817.1
Unique NamemRNA_M-pyrifera_M_contig70443.16817.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70443.16817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70443contigM-pyrifera_M_contig70443:234..1100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size867
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.065978-CDS-M-pyrifera_M_contig70443:233..11001622816597.065978-CDS-M-pyrifera_M_contig70443:233..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70443 234..1100 +
1692278068.3558006-CDS-M-pyrifera_M_contig70443:233..11001692278068.3558006-CDS-M-pyrifera_M_contig70443:233..1100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70443 234..1100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70443.16817.1prot_M-pyrifera_M_contig70443.16817.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70443 234..1100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70443.16817.1

>prot_M-pyrifera_M_contig70443.16817.1 ID=prot_M-pyrifera_M_contig70443.16817.1|Name=mRNA_M-pyrifera_M_contig70443.16817.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=289bp
GAVLAAAGVVLGLVKLSGLTTHQALDEFMRAFPKDMDLANVGQLDATARL
TAVGSYIAACGLGIALVAWPRRKQLAFFVLGAGIARYLIPEFFARTELVQ
IATEPGEAVLPELVVTGLYLVTAAALMGALAVWRDAAGKRRRPLATPVLV
LLAAGAAFLPHASFATDAVATAPWRRFEAQPAYLADTAYGLVAVETHATG
TPLLVVDGLTFTPPPSAIEADVRAFRRSLDLLAANHQPDDPDPRVLLVGQ
LTQPRLYAFWDWRDATGLDAELIWTAPWTDLLEDLEPLL
back to top

mRNA from alignment at M-pyrifera_M_contig70443:234..1100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70443.16817.1 ID=mRNA_M-pyrifera_M_contig70443.16817.1|Name=mRNA_M-pyrifera_M_contig70443.16817.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=867bp|location=Sequence derived from alignment at M-pyrifera_M_contig70443:234..1100+ (Macrocystis pyrifera P11B4 male)
GGCGCGGTCCTCGCAGCCGCCGGCGTCGTGCTCGGCCTGGTCAAGCTCTC
CGGCCTGACCACGCATCAGGCCCTCGACGAGTTCATGCGCGCGTTCCCCA
AGGACATGGACCTGGCGAACGTCGGCCAGCTCGACGCGACGGCTCGGCTC
ACCGCCGTCGGCTCGTACATCGCCGCGTGCGGCCTCGGGATCGCCCTCGT
CGCGTGGCCGCGGCGCAAGCAGCTGGCCTTCTTCGTGCTCGGCGCGGGCA
TCGCGCGCTACCTGATCCCGGAGTTCTTCGCGCGCACCGAGCTCGTCCAG
ATCGCGACCGAGCCCGGAGAAGCGGTGCTGCCCGAGCTCGTCGTCACCGG
GCTCTACCTGGTGACCGCCGCCGCGCTGATGGGCGCGCTCGCGGTGTGGC
GCGACGCCGCCGGCAAGCGGCGCCGCCCGCTCGCCACGCCCGTGCTCGTG
CTGCTCGCCGCCGGCGCGGCCTTCCTGCCGCACGCCTCGTTCGCGACCGA
CGCCGTCGCGACCGCCCCGTGGCGCCGCTTCGAAGCCCAGCCCGCCTACC
TCGCCGACACCGCCTACGGCCTGGTCGCGGTCGAGACCCACGCGACCGGC
ACGCCGCTCCTGGTCGTCGACGGCCTGACCTTCACGCCGCCGCCCAGCGC
GATCGAGGCCGACGTGCGCGCCTTCCGCCGCTCGCTCGACCTCCTGGCCG
CCAACCACCAGCCCGACGACCCCGACCCGCGCGTGCTGCTGGTCGGCCAG
CTGACCCAGCCGCGGCTCTATGCGTTCTGGGACTGGCGCGACGCGACCGG
GCTCGACGCCGAGCTGATCTGGACGGCGCCGTGGACGGACCTGCTCGAGG
ACCTCGAGCCGCTGCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70443:234..1100+

>mRNA_M-pyrifera_M_contig70443.16817.1 ID=mRNA_M-pyrifera_M_contig70443.16817.1|Name=mRNA_M-pyrifera_M_contig70443.16817.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1734bp|location=Sequence derived from alignment at M-pyrifera_M_contig70443:234..1100+ (Macrocystis pyrifera P11B4 male)
GGCGCGGTCCTCGCAGCCGCCGGCGTCGTGCTCGGCCTGGTCAAGCTCTC
CGGCCTGACCACGCATCAGGCCCTCGACGAGTTCATGCGCGCGTTCCCCA
AGGACATGGACCTGGCGAACGTCGGCCAGCTCGACGCGACGGCTCGGCTC
ACCGCCGTCGGCTCGTACATCGCCGCGTGCGGCCTCGGGATCGCCCTCGT
CGCGTGGCCGCGGCGCAAGCAGCTGGCCTTCTTCGTGCTCGGCGCGGGCA
TCGCGCGCTACCTGATCCCGGAGTTCTTCGCGCGCACCGAGCTCGTCCAG
ATCGCGACCGAGCCCGGAGAAGCGGTGCTGCCCGAGCTCGTCGTCACCGG
GCTCTACCTGGTGACCGCCGCCGCGCTGATGGGCGCGCTCGCGGTGTGGC
GCGACGCCGCCGGCAAGCGGCGCCGCCCGCTCGCCACGCCCGTGCTCGTG
CTGCTCGCCGCCGGCGCGGCCTTCCTGCCGCACGCCTCGTTCGCGACCGA
CGCCGTCGCGACCGCCCCGTGGCGCCGCTTCGAAGCCCAGCCCGCCTACC
TCGCCGACACCGCCTACGGCCTGGTCGCGGTCGAGACCCACGCGACCGGC
ACGCCGCTCCTGGTCGTCGACGGCCTGACCTTCACGCCGCCGCCCAGCGC
GATCGAGGCCGACGTGCGCGCCTTCCGCCGCTCGCTCGACCTCCTGGCCG
CCAACCACCAGCCCGACGACCCCGACCCGCGCGTGCTGCTGGTCGGCCAG
CTGACCCAGCCGCGGCTCTATGCGTTCTGGGACTGGCGCGACGCGACCGG
GCTCGACGCCGAGCTGATCTGGACGGCGCCGTGGACGGACCTGCTCGAGG
ACCTCGAGCCGCTGCTCGGCGCGGTCCTCGCAGCCGCCGGCGTCGTGCTC
GGCCTGGTCAAGCTCTCCGGCCTGACCACGCATCAGGCCCTCGACGAGTT
CATGCGCGCGTTCCCCAAGGACATGGACCTGGCGAACGTCGGCCAGCTCG
ACGCGACGGCTCGGCTCACCGCCGTCGGCTCGTACATCGCCGCGTGCGGC
CTCGGGATCGCCCTCGTCGCGTGGCCGCGGCGCAAGCAGCTGGCCTTCTT
CGTGCTCGGCGCGGGCATCGCGCGCTACCTGATCCCGGAGTTCTTCGCGC
GCACCGAGCTCGTCCAGATCGCGACCGAGCCCGGAGAAGCGGTGCTGCCC
GAGCTCGTCGTCACCGGGCTCTACCTGGTGACCGCCGCCGCGCTGATGGG
CGCGCTCGCGGTGTGGCGCGACGCCGCCGGCAAGCGGCGCCGCCCGCTCG
CCACGCCCGTGCTCGTGCTGCTCGCCGCCGGCGCGGCCTTCCTGCCGCAC
GCCTCGTTCGCGACCGACGCCGTCGCGACCGCCCCGTGGCGCCGCTTCGA
AGCCCAGCCCGCCTACCTCGCCGACACCGCCTACGGCCTGGTCGCGGTCG
AGACCCACGCGACCGGCACGCCGCTCCTGGTCGTCGACGGCCTGACCTTC
ACGCCGCCGCCCAGCGCGATCGAGGCCGACGTGCGCGCCTTCCGCCGCTC
GCTCGACCTCCTGGCCGCCAACCACCAGCCCGACGACCCCGACCCGCGCG
TGCTGCTGGTCGGCCAGCTGACCCAGCCGCGGCTCTATGCGTTCTGGGAC
TGGCGCGACGCGACCGGGCTCGACGCCGAGCTGATCTGGACGGCGCCGTG
GACGGACCTGCTCGAGGACCTCGAGCCGCTGCTC
back to top