mRNA_M-pyrifera_M_contig70015.16758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70015.16758.1
Unique NamemRNA_M-pyrifera_M_contig70015.16758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70015.16758.1 vs. uniprot
Match: A0A4P5XM39_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5XM39_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.290e-13
Identity = 51/159 (32.08%), Postives = 82/159 (51.57%), Query Frame = 1 
Query:   19 GVDLSWDLETNADPFVTGVINVFNFTGSTTTFTLNFMQPIAPAVANGVGTGSIALAIQDVFNSGTGSLTSAGGGAIYTPEVDGGVFSAGELLAGTALNVSHA-GETVSTNASFG----PTAVGAVGTSLGLEIEFSLTNLDLATGTSIFEVVEVPEPSS 480
            G  +SW    + DPF+TG  ++ N T     + ++F  PI+P++A    +G ++  + D   SG+ S+TS  GGA+YT   DG       L++     VS A G T  +  SFG    P A  A+ +++G+   F+L+  D  + +SIF    VP P +
Sbjct:   71 GTSMSWSYLVDPDPFITGTFSLTNDTLLAKAYVVDFSLPISPSIAQSTVSGQMSGTLTDSNGSGSASMTSTSGGAVYTALADG--MFVQSLMSNANQTVSSAFGTTSFSGGSFGQGLPPLAGPAINSTIGIRFSFTLSAGDSVSFSSIFVANPVPTPGA 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70015.16758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4P5XM39_9BACT4.290e-1332.08Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70015contigM-pyrifera_M_contig70015:2..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816593.6792202-CDS-M-pyrifera_M_contig70015:1..4871622816593.6792202-CDS-M-pyrifera_M_contig70015:1..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70015 2..487 -
1692278066.6063123-CDS-M-pyrifera_M_contig70015:1..4871692278066.6063123-CDS-M-pyrifera_M_contig70015:1..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70015 2..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70015.16758.1prot_M-pyrifera_M_contig70015.16758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70015 2..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70015.16758.1

>prot_M-pyrifera_M_contig70015.16758.1 ID=prot_M-pyrifera_M_contig70015.16758.1|Name=mRNA_M-pyrifera_M_contig70015.16758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
ATGGSYGVDLSWDLETNADPFVTGVINVFNFTGSTTTFTLNFMQPIAPAV
ANGVGTGSIALAIQDVFNSGTGSLTSAGGGAIYTPEVDGGVFSAGELLAG
TALNVSHAGETVSTNASFGPTAVGAVGTSLGLEIEFSLTNLDLATGTSIF
EVVEVPEPSSAL
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mRNA from alignment at M-pyrifera_M_contig70015:2..487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70015.16758.1 ID=mRNA_M-pyrifera_M_contig70015.16758.1|Name=mRNA_M-pyrifera_M_contig70015.16758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig70015:2..487- (Macrocystis pyrifera P11B4 male)
GCGACTGGTGGGTCGTACGGGGTCGATCTGTCGTGGGACTTGGAAACCAA
TGCCGATCCGTTTGTTACCGGTGTGATCAACGTATTTAACTTCACCGGGA
GCACGACGACGTTCACACTCAACTTTATGCAACCCATTGCCCCGGCTGTC
GCAAACGGTGTCGGTACGGGTTCGATCGCCTTGGCAATCCAAGACGTGTT
TAACTCCGGGACCGGCTCACTTACCTCCGCGGGCGGCGGCGCGATTTACA
CCCCTGAAGTAGATGGCGGTGTTTTCAGTGCTGGTGAATTGCTGGCCGGT
ACCGCACTTAATGTTTCACACGCGGGCGAGACCGTATCCACCAATGCAAG
TTTTGGCCCTACCGCGGTTGGCGCTGTTGGAACAAGCCTTGGTTTGGAAA
TCGAATTCAGCCTGACGAATCTCGACTTAGCTACTGGCACCTCCATTTTT
GAAGTTGTGGAAGTGCCTGAGCCATCGTCGGCATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70015:2..487-

>mRNA_M-pyrifera_M_contig70015.16758.1 ID=mRNA_M-pyrifera_M_contig70015.16758.1|Name=mRNA_M-pyrifera_M_contig70015.16758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig70015:2..487- (Macrocystis pyrifera P11B4 male)
GCGACTGGTGGGTCGTACGGGGTCGATCTGTCGTGGGACTTGGAAACCAA
TGCCGATCCGTTTGTTACCGGTGTGATCAACGTATTTAACTTCACCGGGA
GCACGACGACGTTCACACTCAACTTTATGCAACCCATTGCCCCGGCTGTC
GCAAACGGTGTCGGTACGGGTTCGATCGCCTTGGCAATCCAAGACGTGTT
TAACTCCGGGACCGGCTCACTTACCTCCGCGGGCGGCGGCGCGATTTACA
CCCCTGAAGTAGATGGCGGTGTTTTCAGTGCTGGTGAATTGCTGGCCGGT
ACCGCACTTAATGTTTCACACGCGGGCGAGACCGTATCCACCAATGCAAG
TTTTGGCCCTACCGCGGTTGGCGCTGTTGGAACAAGCCTTGGTTTGGAAA
TCGAATTCAGCCTGACGAATCTCGACTTAGCTACTGGCACCTCCATTTTT
GAAGTTGTGGAAGTGCCTGAGCCATCGTCGGCATTGGCGACTGGTGGGTC
GTACGGGGTCGATCTGTCGTGGGACTTGGAAACCAATGCCGATCCGTTTG
TTACCGGTGTGATCAACGTATTTAACTTCACCGGGAGCACGACGACGTTC
ACACTCAACTTTATGCAACCCATTGCCCCGGCTGTCGCAAACGGTGTCGG
TACGGGTTCGATCGCCTTGGCAATCCAAGACGTGTTTAACTCCGGGACCG
GCTCACTTACCTCCGCGGGCGGCGGCGCGATTTACACCCCTGAAGTAGAT
GGCGGTGTTTTCAGTGCTGGTGAATTGCTGGCCGGTACCGCACTTAATGT
TTCACACGCGGGCGAGACCGTATCCACCAATGCAAGTTTTGGCCCTACCG
CGGTTGGCGCTGTTGGAACAAGCCTTGGTTTGGAAATCGAATTCAGCCTG
ACGAATCTCGACTTAGCTACTGGCACCTCCATTTTTGAAGTTGTGGAAGT
GCCTGAGCCATCGTCGGCATTG
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