mRNA_M-pyrifera_M_contig68846.16552.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A1H7V819_9ACTN (Two-component system, chemotaxis family, response regulator CheY n=17 Tax=Geodermatophilaceae TaxID=85030 RepID=A0A1H7V819_9ACTN) HSP 1 Score: 127 bits (318), Expect = 3.360e-33 Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AG+ DH+ +EAEDGA+ LA S+EQPDL+LSDWNMPNM+GIE L+A RA+G A FGFVTSE S EMR +A AGALFLI KPFT DTF++ L +++
Sbjct: 23 AGYDDHDIVEAEDGADALAKVSSEQPDLVLSDWNMPNMTGIECLQALRASGSAVPFGFVTSEGSAEMREKAANAGALFLIAKPFTEDTFKEHLDGVIA 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A2M7HEL7_9PROT (Response regulator n=1 Tax=Zetaproteobacteria bacterium CG12_big_fil_rev_8_21_14_0_65_55_1124 TaxID=1974127 RepID=A0A2M7HEL7_9PROT) HSP 1 Score: 124 bits (311), Expect = 3.830e-32 Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AG+ DHE EA DG E L +A QPDLI+SDWNMPNM+GIEFL+A + G +T FGFVT+E S +MR A AGA FLITKPFTADTF+ +LG +LS
Sbjct: 23 AGYGDHESKEANDGVEALGIAREWQPDLIISDWNMPNMNGIEFLQALKGEGFSTPFGFVTTEGSAQMRQTAEEAGAKFLITKPFTADTFKTQLGPILS 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: UPI001CCCA962 (response regulator n=2 Tax=Blastococcus TaxID=38501 RepID=UPI001CCCA962) HSP 1 Score: 123 bits (308), Expect = 1.040e-31 Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AG+ DH+ +EAEDGAE LA +E PDLILSDWNMPNM+GIE L+A RA G + FGFVTSE S EMR +A AGALFLI KPFT DTF++ L +++
Sbjct: 23 AGYDDHDIVEAEDGAEALAKVGSESPDLILSDWNMPNMTGIECLEALRAQGSSVPFGFVTSEGSAEMREKAANAGALFLIAKPFTEDTFKEHLDGVIA 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A4V1BMD4_9ACTN (Response regulator n=1 Tax=Nocardioides seonyuensis TaxID=2518371 RepID=A0A4V1BMD4_9ACTN) HSP 1 Score: 122 bits (306), Expect = 2.070e-31 Identity = 63/97 (64.95%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLL 291
AGF H+ +EAEDG + L +EQPDL+LSDWNMPNM+GIE L+ RA G A FGFVTSE S EMR A GAGALFLI KPFTADTF LG++L
Sbjct: 23 AGFSSHDFVEAEDGLDALNKVGSEQPDLVLSDWNMPNMTGIELLRQLRANGNAVPFGFVTSEGSPEMRELAAGAGALFLIAKPFTADTFADALGAVL 119
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A4U3CGA8_9ACTN (Histidine kinase n=7 Tax=Blastococcus TaxID=38501 RepID=A0A4U3CGA8_9ACTN) HSP 1 Score: 121 bits (303), Expect = 5.780e-31 Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AG+ DH+ +EAEDGA+ LA +E+PDLILSDWNMPNMSGIE L+A R++G FGFVTSE S EMRS+A AGALFLI KPF +TFQ+ L +++
Sbjct: 23 AGYDDHDIVEAEDGADALAKVGSEKPDLILSDWNMPNMSGIECLQALRSSGSTVPFGFVTSEGSPEMRSKAADAGALFLIAKPFNEETFQEALSGVIA 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A2G6JVD0_9MICO (Response regulator n=1 Tax=Micrococcales bacterium TaxID=2026762 RepID=A0A2G6JVD0_9MICO) HSP 1 Score: 120 bits (301), Expect = 1.150e-30 Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AGF HE +EAEDGA+ LA +++PDL+LSDWNMPNMSG+E L+A R +G FGFVTSE S +MR +A+ AGALFLI KPFT + FQ+ LG L+
Sbjct: 23 AGFDGHELIEAEDGADALAKIDSQEPDLVLSDWNMPNMSGLELLQALRGSGNTVPFGFVTSEGSQQMREQASSAGALFLIAKPFTPEAFQEALGPYLN 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A239J8F7_9ACTN (Two-component system, chemotaxis family, response regulator CheY n=1 Tax=Geodermatophilus saharensis TaxID=1137994 RepID=A0A239J8F7_9ACTN) HSP 1 Score: 120 bits (300), Expect = 1.620e-30 Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AG+ DHE +EAEDG +G +E PDL+LSDWNMPNM+G+EFL+A R++G A FGFVTSE S EMR +A AGALFLI KPFT ++F++ L +LS
Sbjct: 23 AGYDDHEVVEAEDGRDGYDKVRSENPDLVLSDWNMPNMTGLEFLQALRSSGSAVPFGFVTSEGSAEMREKAADAGALFLIAKPFTEESFRENLEGVLS 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: UPI0019A0DA2E (Response regulator n=1 Tax=Pseudorhodobacter sp. TaxID=1934400 RepID=UPI0019A0DA2E) HSP 1 Score: 120 bits (300), Expect = 1.670e-30 Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AGF +HE LEAE+GAEGLA A PDL+LSDWNMP +SGIEFL+A R+ G FGFVTSES+ MR A +GALFLI KPFT DTF + LG +L+
Sbjct: 23 AGFAEHEFLEAENGAEGLASVVAHSPDLVLSDWNMPELSGIEFLQALRSQGHEVRFGFVTSESTDAMRELAMSSGALFLIAKPFTTDTFAEALGGVLT 120
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A239VU82_9MICO (Chemotaxis protein CheY n=3 Tax=Dermatophilaceae TaxID=85018 RepID=A0A239VU82_9MICO) HSP 1 Score: 119 bits (299), Expect = 2.280e-30 Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKEL 279
AG+ E +E EDGAEGLA +E PDL+LSDWNMPNMSGIEFL+A RA G NFGFVTSE S MR +A+ +GALFLI KPFTAD F + L
Sbjct: 23 AGYDSAEIIECEDGAEGLAKVKSESPDLVLSDWNMPNMSGIEFLQALRAEGNNVNFGFVTSEGSDAMREQASASGALFLIAKPFTADMFSEAL 115
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A1H0EKG6_9ACTN (Two-component system, chemotaxis family, response regulator CheY n=4 Tax=root TaxID=1 RepID=A0A1H0EKG6_9ACTN) HSP 1 Score: 119 bits (298), Expect = 3.210e-30 Identity = 61/98 (62.24%), Postives = 77/98 (78.57%), Query Frame = 1
Query: 1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
AG+ D + +EAEDG E LA +++ PDL+LSDWNMPNM+GIE L+A RA G + FGFVTSE S EMR +A+ AGALFLI KPFTADTF+ EL ++L+
Sbjct: 23 AGYDDVDIVEAEDGVECLAKVASDAPDLVLSDWNMPNMTGIECLRALRAQGSSVPFGFVTSEGSPEMREQASQAGALFLIAKPFTADTFRDELDTVLA 120 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig68846.16552.1 >prot_M-pyrifera_M_contig68846.16552.1 ID=prot_M-pyrifera_M_contig68846.16552.1|Name=mRNA_M-pyrifera_M_contig68846.16552.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp MAEVTFRRIDAASTFDATQLGIEEQDVAGMLRDLLGRKVTTKSSSKLTKGback to top mRNA from alignment at M-pyrifera_M_contig68846:6..1197+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig68846.16552.1 ID=mRNA_M-pyrifera_M_contig68846.16552.1|Name=mRNA_M-pyrifera_M_contig68846.16552.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1192bp|location=Sequence derived from alignment at M-pyrifera_M_contig68846:6..1197+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig68846:6..1197+ >mRNA_M-pyrifera_M_contig68846.16552.1 ID=mRNA_M-pyrifera_M_contig68846.16552.1|Name=mRNA_M-pyrifera_M_contig68846.16552.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig68846:6..1197+ (Macrocystis pyrifera P11B4 male)back to top |