mRNA_M-pyrifera_M_contig68808.16541.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68808.16541.1
Unique NamemRNA_M-pyrifera_M_contig68808.16541.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: H9W3F2_PINTA (RING-type domain-containing protein (Fragment) n=3 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9W3F2_PINTA)

HSP 1 Score: 75.5 bits (184), Expect = 7.670e-16
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDEN 165
            C+VCLEEF++G  AR +PC   H+FH DCI  WL+L +SCPVCR Q+  DDE+
Sbjct:   66 CAVCLEEFEVGSEAREMPCK--HMFHSDCIQPWLKLHSSCPVCRYQMPVDDED 116
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: A9NK49_PICSI (RING-type E3 ubiquitin transferase n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NK49_PICSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.670e-15
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDEN 165
            C+VCLEEF+LG  AR++PC   H+FH DCI  WL+L +SCPVCR Q+  DDE+
Sbjct:  192 CAVCLEEFELGSEARQMPCK--HMFHSDCIQPWLKLHSSCPVCRFQMPVDDED 242
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: J3MCA0_ORYBR (RING-type domain-containing protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3MCA0_ORYBR)

HSP 1 Score: 73.6 bits (179), Expect = 6.450e-15
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDENPPSS 177
            C VC EEF+LG+ AR LPC   H +H DCI  WLRL NSCPVCR ++   D   P S
Sbjct:   13 CPVCKEEFELGEAARELPCK--HAYHSDCIVPWLRLHNSCPVCRQEVPVPDGEAPDS 67
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: A0A6J1GWR8_CUCMO (E3 ubiquitin-protein ligase RING1-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1GWR8_CUCMO)

HSP 1 Score: 74.3 bits (181), Expect = 8.760e-15
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDEN 165
            C +CLEE + GD+A+++PCS  H FH DCI+ WL L  SCP+CR Q+  DDE+
Sbjct:  103 CVICLEEIEAGDLAKQMPCS--HKFHGDCIEKWLELHGSCPICRYQMPIDDED 153
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: UPI001C4FD030 (probable E3 ubiquitin-protein ligase RHC1A isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4FD030)

HSP 1 Score: 75.5 bits (184), Expect = 1.630e-14
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    4 MCSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDENP 168
            +C VC EEFK+G+ AR++PC+  HV+H DCI  WLR+ NSCPVCR+++   + +P
Sbjct:  218 LCPVCKEEFKVGEEARQMPCN--HVYHSDCIVPWLRIHNSCPVCRHELHLQEASP 270
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: A0A6P4AUZ6_ZIZJJ (probable E3 ubiquitin-protein ligase RHC1A n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AUZ6_ZIZJJ)

HSP 1 Score: 72.0 bits (175), Expect = 1.960e-14
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 PMCSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQI 147
            P C VC+EEFK+G  A+ LPC   H++H DCI  WLRL NSCPVCR+++
Sbjct:   89 PHCPVCMEEFKVGGEAKELPCK--HIYHYDCIVPWLRLHNSCPVCRHEL 135
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: A0A484MHI1_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MHI1_9ASTE)

HSP 1 Score: 75.5 bits (184), Expect = 2.510e-14
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDEN 165
            CSVCLEEF++G+ AR LPC   H++H +CI  WLRL NSCPVCRN +   DEN
Sbjct:  466 CSVCLEEFEVGEEARELPCK--HIYHSECIVPWLRLHNSCPVCRNDV---DEN 513
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BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: A0A1A9V9E2_GLOAU (RING-type domain-containing protein n=1 Tax=Glossina austeni TaxID=7395 RepID=A0A1A9V9E2_GLOAU)

HSP 1 Score: 71.2 bits (173), Expect = 3.190e-14
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFD 156
            C+VCL +F+L ++ R+LPC  AH FH DC+D WL+LR +CP+CR  +F D
Sbjct:   84 CAVCLNDFQLNEVIRKLPC--AHDFHVDCVDKWLKLRRTCPMCRACVFND 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: UPI000C1CF87E (probable E3 ubiquitin-protein ligase RHC1A n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF87E)

HSP 1 Score: 74.3 bits (181), Expect = 3.230e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    7 CSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFFDDENPPSS 177
            C VC+EEFKLG  AR LPC+  H++H DCI  WLRL NSCPVCR+++    + P  S
Sbjct:  234 CPVCMEEFKLGTKARELPCN--HIYHSDCIVPWLRLHNSCPVCRHELPVPSQIPADS 288
[Close]
BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Match: A0A835G012_9POAL (RING-type E3 ubiquitin transferase n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835G012_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 3.670e-14
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 PMCSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQI 147
            P C VC E+F+LG+ AR+LPC   HV+H DCI  WLRL NSCPVCR Q+
Sbjct:  171 PQCPVCKEDFELGEAARQLPCK--HVYHSDCIVPWLRLHNSCPVCRYQL 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68808.16541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H9W3F2_PINTA7.670e-1658.49RING-type domain-containing protein (Fragment) n=3... [more]
A9NK49_PICSI5.670e-1560.38RING-type E3 ubiquitin transferase n=1 Tax=Picea s... [more]
J3MCA0_ORYBR6.450e-1556.14RING-type domain-containing protein n=2 Tax=Oryza ... [more]
A0A6J1GWR8_CUCMO8.760e-1554.72E3 ubiquitin-protein ligase RING1-like n=3 Tax=Cuc... [more]
UPI001C4FD0301.630e-1452.73probable E3 ubiquitin-protein ligase RHC1A isoform... [more]
A0A6P4AUZ6_ZIZJJ1.960e-1459.18probable E3 ubiquitin-protein ligase RHC1A n=1 Tax... [more]
A0A484MHI1_9ASTE2.510e-1462.26Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A1A9V9E2_GLOAU3.190e-1454.00RING-type domain-containing protein n=1 Tax=Glossi... [more]
UPI000C1CF87E3.230e-1456.14probable E3 ubiquitin-protein ligase RHC1A n=1 Tax... [more]
A0A835G012_9POAL3.670e-1463.27RING-type E3 ubiquitin transferase n=2 Tax=Digitar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68808contigM-pyrifera_M_contig68808:677..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog4533.OB06G16440.1
KEGG koko:K11982
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.zinc-ribbon
EggNOG OGs37KMZ@33090,3G775@35493,3I77U@38820,3KU9F@4447,KOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121,ko04131
Exons1
Model size207
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.1652386-UTR-M-pyrifera_M_contig68808:676..6791622816580.1652386-UTR-M-pyrifera_M_contig68808:676..679Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68808 677..679 +
1692278058.471836-UTR-M-pyrifera_M_contig68808:676..6791692278058.471836-UTR-M-pyrifera_M_contig68808:676..679Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68808 677..679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.1860044-CDS-M-pyrifera_M_contig68808:679..8831622816580.1860044-CDS-M-pyrifera_M_contig68808:679..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68808 680..883 +
1692278058.4873064-CDS-M-pyrifera_M_contig68808:679..8831692278058.4873064-CDS-M-pyrifera_M_contig68808:679..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68808 680..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68808.16541.1prot_M-pyrifera_M_contig68808.16541.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68808 680..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68808.16541.1

>prot_M-pyrifera_M_contig68808.16541.1 ID=prot_M-pyrifera_M_contig68808.16541.1|Name=mRNA_M-pyrifera_M_contig68808.16541.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MCSVCLEEFKLGDIARRLPCSGAHVFHKDCIDNWLRLRNSCPVCRNQIFF
DDENPPSSPTTNALPSPS
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mRNA from alignment at M-pyrifera_M_contig68808:677..883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68808.16541.1 ID=mRNA_M-pyrifera_M_contig68808.16541.1|Name=mRNA_M-pyrifera_M_contig68808.16541.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig68808:677..883+ (Macrocystis pyrifera P11B4 male)
CCAATGTGTTCTGTGTGCTTGGAAGAGTTTAAATTAGGAGATATTGCAAG
GAGACTTCCATGTTCAGGAGCTCACGTGTTCCATAAAGACTGCATTGATA
ATTGGCTACGTCTTCGAAATTCTTGTCCTGTTTGTAGGAACCAAATCTTT
TTTGATGATGAGAATCCACCATCATCCCCAACTACCAATGCTCTCCCATC
ACCTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68808:677..883+

>mRNA_M-pyrifera_M_contig68808.16541.1 ID=mRNA_M-pyrifera_M_contig68808.16541.1|Name=mRNA_M-pyrifera_M_contig68808.16541.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig68808:677..883+ (Macrocystis pyrifera P11B4 male)
ATGTGTTCTGTGTGCTTGGAAGAGTTTAAATTAGGAGATATTGCAAGGAG
ACTTCCATGTTCAGGAGCTCACGTGTTCCATAAAGACTGCATTGATAATT
GGCTACGTCTTCGAAATTCTTGTCCTGTTTGTAGGAACCAAATCTTTTTT
GATGATGAGAATCCACCATCATCCCCAACTACCAATGCTCTCCCATCACC
TTCTATGTGTTCTGTGTGCTTGGAAGAGTTTAAATTAGGAGATATTGCAA
GGAGACTTCCATGTTCAGGAGCTCACGTGTTCCATAAAGACTGCATTGAT
AATTGGCTACGTCTTCGAAATTCTTGTCCTGTTTGTAGGAACCAAATCTT
TTTTGATGATGAGAATCCACCATCATCCCCAACTACCAATGCTCTCCCAT
CACCTTCT
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