mRNA_M-pyrifera_M_contig68781.16540.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68781.16540.1
Unique NamemRNA_M-pyrifera_M_contig68781.16540.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68781.16540.1 vs. uniprot
Match: A0A7S1C3X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3X5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.920e-17
Identity = 69/213 (32.39%), Postives = 103/213 (48.36%), Query Frame = 1 
Query:    1 FLTAVEGALTGCATETRQLFEEEGEPLGPEFEDLPDSLQRYVGDQRASARDRRNVLRARLRDQCSRLRELAAPACEVAVHDAASRGADEAVSKDAEAVRAFKYAVRELAHEREAHASKLLPRLADPNLADELAALCESEQDRVHRHRETIVNARTGMLRERLRTAWLVTGRVALTVRSLLRCIDALPIPEDFAPMPGDGIVAPEKIGVRRLRK 639
            F+ AV+  +  C  ETR L+E EG+PL  E   LP SL+ Y+ +Q+  A D R     R R+Q  RL+++   A   AV D  +R  D A S                   +  H  +L P+L+DPN    L +L   E +RV   R  I  AR  +L +RL  +     R+      LL+ +D   I  D A +PGD +V P ++ ++R++K
Sbjct:  438 FMGAVDDLVAKCGEETRALYESEGKPL--EDGALPPSLEAYLAEQKEKAADFREASARRFREQIERLQQILLTAPVTAVKDVTARAKDIADSAAXXXXXXXXXXXXXXXXXKAKHRGELKPQLSDPNEVAALDSLAAREAERVVDVRAAIARARDAVLNKRLERSADGMARLRHVADVLLKLLDTSLIRNDLAALPGDDLVVPVRMSLKRMQK 648
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BLAST of mRNA_M-pyrifera_M_contig68781.16540.1 vs. uniprot
Match: A0A8J2AIZ5_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AIZ5_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 3.220e-5
Identity = 49/182 (26.92%), Postives = 82/182 (45.05%), Query Frame = 1 
Query:  100 LPDSLQRYVGDQRASARDRRNVLRARLRDQCSRLR-ELAAPACEVAVHDAASRGADEAVSKDAEAVRAFKYAVRELAHEREAHASKLLPRLADPNLADELAALCESEQDRVHRHRETIVNARTGMLRERLRTAWLVTGRVALTVRSLLRCIDALPIPEDFAPMPGDGIVAPEKIGVRRLRKR 642
            LPD + +++ D + S    R      LR++C  LR E+       A  D   R  +       +  +    A   L   R +H  +L P LA+PN A  L  L + E  R     E++   +        R A     ++ L  ++L+R +DA+P+P  F P+PGD  V  E++ ++R ++R
Sbjct: 1130 LPDFMAKFLADMKVSTESHRQKNCRELREKCRLLRDEVLLQVGPSAFGDLLERQLESCKQAIIKLSKQMGKAAALLEERRLSHEQRLTPSLANPNNARILQKLKDDEALRYKDACESLNRFKLEFANTLQREAVAFLHKLVLLFQTLVRVLDAVPMPTHFNPLPGDENVQKERMSIKRRKRR 1311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68781.16540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1C3X5_9STRA8.920e-1732.39Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2AIZ5_9DINO3.220e-526.92Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68781contigM-pyrifera_M_contig68781:156..866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue6e-09
Seed eggNOG ortholog44056.XP_009042039.1
Preferred nameCCDC180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4455)
EggNOG OGs2CN0H@1,2QT47@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size711
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.134338-CDS-M-pyrifera_M_contig68781:155..8661622816580.134338-CDS-M-pyrifera_M_contig68781:155..866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68781 156..866 +
1692278058.4488578-CDS-M-pyrifera_M_contig68781:155..8661692278058.4488578-CDS-M-pyrifera_M_contig68781:155..866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68781 156..866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68781.16540.1prot_M-pyrifera_M_contig68781.16540.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68781 156..866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68781.16540.1

>prot_M-pyrifera_M_contig68781.16540.1 ID=prot_M-pyrifera_M_contig68781.16540.1|Name=mRNA_M-pyrifera_M_contig68781.16540.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=237bp
FLTAVEGALTGCATETRQLFEEEGEPLGPEFEDLPDSLQRYVGDQRASAR
DRRNVLRARLRDQCSRLRELAAPACEVAVHDAASRGADEAVSKDAEAVRA
FKYAVRELAHEREAHASKLLPRLADPNLADELAALCESEQDRVHRHRETI
VNARTGMLRERLRTAWLVTGRVALTVRSLLRCIDALPIPEDFAPMPGDGI
VAPEKIGVRRLRKRRAREAAERAAAASGAVVQGQMVR
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mRNA from alignment at M-pyrifera_M_contig68781:156..866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68781.16540.1 ID=mRNA_M-pyrifera_M_contig68781.16540.1|Name=mRNA_M-pyrifera_M_contig68781.16540.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=711bp|location=Sequence derived from alignment at M-pyrifera_M_contig68781:156..866+ (Macrocystis pyrifera P11B4 male)
TTCTTAACTGCGGTGGAGGGTGCGTTGACAGGGTGTGCAACTGAGACACG
ACAATTGTTTGAAGAGGAAGGGGAACCACTTGGTCCTGAGTTTGAAGATC
TTCCAGATTCTTTGCAACGATATGTTGGGGATCAACGTGCATCTGCGAGA
GATCGCCGGAATGTATTGCGTGCTAGACTTCGAGACCAATGCAGTCGTCT
CCGTGAGCTGGCTGCTCCAGCATGTGAAGTAGCTGTCCATGATGCAGCAA
GTCGTGGTGCGGATGAAGCTGTGTCCAAGGATGCAGAAGCGGTTCGGGCA
TTCAAGTATGCAGTACGTGAATTAGCTCATGAACGTGAGGCACATGCGAG
TAAATTACTTCCACGCCTTGCTGATCCAAATCTTGCTGATGAGCTTGCTG
CATTGTGTGAATCTGAACAAGATCGTGTGCATCGTCATCGTGAAACCATT
GTGAATGCCCGTACCGGGATGTTACGAGAACGACTTCGAACTGCATGGTT
GGTGACTGGCCGTGTTGCACTCACAGTTCGTAGCCTTCTTCGGTGTATTG
ATGCTCTTCCGATTCCAGAGGATTTTGCACCAATGCCAGGTGATGGTATT
GTTGCACCTGAAAAAATTGGTGTTCGAAGACTTCGAAAACGAAGGGCACG
TGAAGCTGCAGAACGTGCAGCAGCTGCAAGTGGTGCAGTGGTGCAGGGGC
AGATGGTGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68781:156..866+

>mRNA_M-pyrifera_M_contig68781.16540.1 ID=mRNA_M-pyrifera_M_contig68781.16540.1|Name=mRNA_M-pyrifera_M_contig68781.16540.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1422bp|location=Sequence derived from alignment at M-pyrifera_M_contig68781:156..866+ (Macrocystis pyrifera P11B4 male)
TTCTTAACTGCGGTGGAGGGTGCGTTGACAGGGTGTGCAACTGAGACACG
ACAATTGTTTGAAGAGGAAGGGGAACCACTTGGTCCTGAGTTTGAAGATC
TTCCAGATTCTTTGCAACGATATGTTGGGGATCAACGTGCATCTGCGAGA
GATCGCCGGAATGTATTGCGTGCTAGACTTCGAGACCAATGCAGTCGTCT
CCGTGAGCTGGCTGCTCCAGCATGTGAAGTAGCTGTCCATGATGCAGCAA
GTCGTGGTGCGGATGAAGCTGTGTCCAAGGATGCAGAAGCGGTTCGGGCA
TTCAAGTATGCAGTACGTGAATTAGCTCATGAACGTGAGGCACATGCGAG
TAAATTACTTCCACGCCTTGCTGATCCAAATCTTGCTGATGAGCTTGCTG
CATTGTGTGAATCTGAACAAGATCGTGTGCATCGTCATCGTGAAACCATT
GTGAATGCCCGTACCGGGATGTTACGAGAACGACTTCGAACTGCATGGTT
GGTGACTGGCCGTGTTGCACTCACAGTTCGTAGCCTTCTTCGGTGTATTG
ATGCTCTTCCGATTCCAGAGGATTTTGCACCAATGCCAGGTGATGGTATT
GTTGCACCTGAAAAAATTGGTGTTCGAAGACTTCGAAAACGAAGGGCACG
TGAAGCTGCAGAACGTGCAGCAGCTGCAAGTGGTGCAGTGGTGCAGGGGC
AGATGGTGAGGTTCTTAACTGCGGTGGAGGGTGCGTTGACAGGGTGTGCA
ACTGAGACACGACAATTGTTTGAAGAGGAAGGGGAACCACTTGGTCCTGA
GTTTGAAGATCTTCCAGATTCTTTGCAACGATATGTTGGGGATCAACGTG
CATCTGCGAGAGATCGCCGGAATGTATTGCGTGCTAGACTTCGAGACCAA
TGCAGTCGTCTCCGTGAGCTGGCTGCTCCAGCATGTGAAGTAGCTGTCCA
TGATGCAGCAAGTCGTGGTGCGGATGAAGCTGTGTCCAAGGATGCAGAAG
CGGTTCGGGCATTCAAGTATGCAGTACGTGAATTAGCTCATGAACGTGAG
GCACATGCGAGTAAATTACTTCCACGCCTTGCTGATCCAAATCTTGCTGA
TGAGCTTGCTGCATTGTGTGAATCTGAACAAGATCGTGTGCATCGTCATC
GTGAAACCATTGTGAATGCCCGTACCGGGATGTTACGAGAACGACTTCGA
ACTGCATGGTTGGTGACTGGCCGTGTTGCACTCACAGTTCGTAGCCTTCT
TCGGTGTATTGATGCTCTTCCGATTCCAGAGGATTTTGCACCAATGCCAG
GTGATGGTATTGTTGCACCTGAAAAAATTGGTGTTCGAAGACTTCGAAAA
CGAAGGGCACGTGAAGCTGCAGAACGTGCAGCAGCTGCAAGTGGTGCAGT
GGTGCAGGGGCAGATGGTGAGG
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