mRNA_M-pyrifera_M_contig68773.16538.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68773.16538.1
Unique NamemRNA_M-pyrifera_M_contig68773.16538.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68773.16538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68773contigM-pyrifera_M_contig68773:34..969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size936
Cds size936
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.0510097-CDS-M-pyrifera_M_contig68773:33..9691622816580.0510097-CDS-M-pyrifera_M_contig68773:33..969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68773 34..969 -
1692278058.4066627-CDS-M-pyrifera_M_contig68773:33..9691692278058.4066627-CDS-M-pyrifera_M_contig68773:33..969Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68773 34..969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68773.16538.1prot_M-pyrifera_M_contig68773.16538.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68773 34..969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68773.16538.1

>prot_M-pyrifera_M_contig68773.16538.1 ID=prot_M-pyrifera_M_contig68773.16538.1|Name=mRNA_M-pyrifera_M_contig68773.16538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=312bp
PNTRLHYLHGTDEGVRGSDAVTDLVWLRMTGVFWGVLALYFSFRALRLLF
ECERRALWFTALLAWTPQLQFISANVNMDAMLAASGAFFFWAALEWLRAP
GRAIGWAIATGAAVGVAAHVKLNGLVLGVPLVLALVLRARSRSLAVASQA
PAPRAMPLPSGSRRRESLAAALACAVSLAPYYLHGLVRTGHPLWMWAYQK
ASPLHNPPGQAEAVWDLEGLWNYHLGLFLTWFADIGWASVWFPSWIALPV
LLIFALGGAFGLVLCVRALTRGGSFSTRPGLALVLGAFLAIFVAEFYFNS
STPQPQGRHLYP
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mRNA from alignment at M-pyrifera_M_contig68773:34..969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68773.16538.1 ID=mRNA_M-pyrifera_M_contig68773.16538.1|Name=mRNA_M-pyrifera_M_contig68773.16538.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig68773:34..969- (Macrocystis pyrifera P11B4 male)
CCGAACACCCGGCTGCACTACCTGCACGGGACGGACGAGGGCGTGCGCGG
TTCGGACGCCGTGACGGACCTGGTCTGGCTGCGAATGACCGGGGTCTTCT
GGGGCGTGCTGGCGCTGTACTTCTCGTTCCGCGCGCTGCGGCTGCTCTTC
GAGTGCGAGCGGCGTGCGCTGTGGTTCACGGCGTTGCTCGCGTGGACGCC
GCAGCTGCAGTTCATCTCCGCCAACGTGAACATGGACGCGATGCTGGCGG
CGTCGGGGGCGTTCTTCTTCTGGGCGGCGCTCGAGTGGCTGCGTGCGCCG
GGCCGGGCCATCGGCTGGGCCATCGCAACCGGGGCCGCGGTCGGGGTCGC
GGCCCACGTCAAGCTCAACGGGCTGGTGCTCGGGGTGCCGTTGGTCCTGG
CGCTGGTGCTGCGCGCGCGCTCGCGCTCCTTGGCGGTCGCCAGCCAGGCC
CCCGCGCCCCGCGCGATGCCGCTTCCCTCCGGTTCGCGGCGGCGCGAGTC
GCTCGCCGCCGCGCTTGCCTGTGCGGTCTCGCTGGCGCCCTACTACCTCC
ATGGCCTGGTCCGCACCGGCCACCCCCTTTGGATGTGGGCGTACCAAAAG
GCGAGTCCGCTGCACAACCCGCCGGGCCAGGCCGAGGCGGTCTGGGATCT
CGAGGGGCTCTGGAACTACCACCTGGGCCTGTTCCTCACGTGGTTCGCGG
ACATCGGCTGGGCGTCGGTCTGGTTCCCCAGCTGGATCGCGCTGCCCGTG
CTCTTGATCTTTGCGCTCGGCGGCGCGTTCGGGCTCGTGTTGTGCGTGCG
GGCGCTGACCCGCGGCGGTTCGTTCTCGACGCGGCCCGGGCTGGCGCTGG
TCCTTGGTGCCTTCCTCGCGATCTTCGTCGCCGAGTTCTACTTCAACTCG
AGCACCCCCCAACCCCAGGGCCGGCACCTCTACCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68773:34..969-

>mRNA_M-pyrifera_M_contig68773.16538.1 ID=mRNA_M-pyrifera_M_contig68773.16538.1|Name=mRNA_M-pyrifera_M_contig68773.16538.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1872bp|location=Sequence derived from alignment at M-pyrifera_M_contig68773:34..969- (Macrocystis pyrifera P11B4 male)
CCGAACACCCGGCTGCACTACCTGCACGGGACGGACGAGGGCGTGCGCGG
TTCGGACGCCGTGACGGACCTGGTCTGGCTGCGAATGACCGGGGTCTTCT
GGGGCGTGCTGGCGCTGTACTTCTCGTTCCGCGCGCTGCGGCTGCTCTTC
GAGTGCGAGCGGCGTGCGCTGTGGTTCACGGCGTTGCTCGCGTGGACGCC
GCAGCTGCAGTTCATCTCCGCCAACGTGAACATGGACGCGATGCTGGCGG
CGTCGGGGGCGTTCTTCTTCTGGGCGGCGCTCGAGTGGCTGCGTGCGCCG
GGCCGGGCCATCGGCTGGGCCATCGCAACCGGGGCCGCGGTCGGGGTCGC
GGCCCACGTCAAGCTCAACGGGCTGGTGCTCGGGGTGCCGTTGGTCCTGG
CGCTGGTGCTGCGCGCGCGCTCGCGCTCCTTGGCGGTCGCCAGCCAGGCC
CCCGCGCCCCGCGCGATGCCGCTTCCCTCCGGTTCGCGGCGGCGCGAGTC
GCTCGCCGCCGCGCTTGCCTGTGCGGTCTCGCTGGCGCCCTACTACCTCC
ATGGCCTGGTCCGCACCGGCCACCCCCTTTGGATGTGGGCGTACCAAAAG
GCGAGTCCGCTGCACAACCCGCCGGGCCAGGCCGAGGCGGTCTGGGATCT
CGAGGGGCTCTGGAACTACCACCTGGGCCTGTTCCTCACGTGGTTCGCGG
ACATCGGCTGGGCGTCGGTCTGGTTCCCCAGCTGGATCGCGCTGCCCGTG
CTCTTGATCTTTGCGCTCGGCGGCGCGTTCGGGCTCGTGTTGTGCGTGCG
GGCGCTGACCCGCGGCGGTTCGTTCTCGACGCGGCCCGGGCTGGCGCTGG
TCCTTGGTGCCTTCCTCGCGATCTTCGTCGCCGAGTTCTACTTCAACTCG
AGCACCCCCCAACCCCAGGGCCGGCACCTCTACCCGCCGAACACCCGGCT
GCACTACCTGCACGGGACGGACGAGGGCGTGCGCGGTTCGGACGCCGTGA
CGGACCTGGTCTGGCTGCGAATGACCGGGGTCTTCTGGGGCGTGCTGGCG
CTGTACTTCTCGTTCCGCGCGCTGCGGCTGCTCTTCGAGTGCGAGCGGCG
TGCGCTGTGGTTCACGGCGTTGCTCGCGTGGACGCCGCAGCTGCAGTTCA
TCTCCGCCAACGTGAACATGGACGCGATGCTGGCGGCGTCGGGGGCGTTC
TTCTTCTGGGCGGCGCTCGAGTGGCTGCGTGCGCCGGGCCGGGCCATCGG
CTGGGCCATCGCAACCGGGGCCGCGGTCGGGGTCGCGGCCCACGTCAAGC
TCAACGGGCTGGTGCTCGGGGTGCCGTTGGTCCTGGCGCTGGTGCTGCGC
GCGCGCTCGCGCTCCTTGGCGGTCGCCAGCCAGGCCCCCGCGCCCCGCGC
GATGCCGCTTCCCTCCGGTTCGCGGCGGCGCGAGTCGCTCGCCGCCGCGC
TTGCCTGTGCGGTCTCGCTGGCGCCCTACTACCTCCATGGCCTGGTCCGC
ACCGGCCACCCCCTTTGGATGTGGGCGTACCAAAAGGCGAGTCCGCTGCA
CAACCCGCCGGGCCAGGCCGAGGCGGTCTGGGATCTCGAGGGGCTCTGGA
ACTACCACCTGGGCCTGTTCCTCACGTGGTTCGCGGACATCGGCTGGGCG
TCGGTCTGGTTCCCCAGCTGGATCGCGCTGCCCGTGCTCTTGATCTTTGC
GCTCGGCGGCGCGTTCGGGCTCGTGTTGTGCGTGCGGGCGCTGACCCGCG
GCGGTTCGTTCTCGACGCGGCCCGGGCTGGCGCTGGTCCTTGGTGCCTTC
CTCGCGATCTTCGTCGCCGAGTTCTACTTCAACTCGAGCACCCCCCAACC
CCAGGGCCGGCACCTCTACCCG
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