mRNA_M-pyrifera_M_contig68770.16536.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A7S4IE78_9EUKA (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IE78_9EUKA) HSP 1 Score: 127 bits (318), Expect = 1.000e-33 Identity = 78/190 (41.05%), Postives = 106/190 (55.79%), Query Frame = 1
Query: 25 AGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLR-LRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
AGSIDGT E PHD+AL RAS++ + ++D+ RG P+ T+FV + + +E+ L+ + G++RR+RLVRDIVTG +GYAF E+ S+ RA R + G R++++ + PGWVPRR GGGLGGRKE+GQLRFGGR RPHRVP
Sbjct: 1 AGSIDGTDEIPHDKALERASNAHY-------------------------------------DPKKDSKI-RGDPKYTIFVGRISYETSEQTLKEEFSRYGEIRRLRLVRDIVTGLSKGYAFIEYEHSSDCRRAHEKMHRRYIDGRRILVDIERERAQPGWVPRRLGGGLGGRKESGQLRFGGRDRPHRVP 152
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A7I8W8A0_9ANNE (DgyrCDS12713 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W8A0_9ANNE) HSP 1 Score: 123 bits (309), Expect = 1.060e-31 Identity = 80/198 (40.40%), Postives = 103/198 (52.02%), Query Frame = 1
Query: 1 MERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRG-PPLRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+++YD V+ GSIDGT E HD+A++RAS A+ P + TV G ++TLFV L D EE L + G +R +R+VRDIVTG + YAF EF S+ AL+ L L G R+ +E +L + GWVPRR GGGLGGRKEAGQLRFGG+ RP P
Sbjct: 12 VDKYDPVMVGSIDGTDEEAHDKAIIRASE--------------AKYKP-----------------------NKGTV---GNAKKTLFVFNLNSDTKEETLTKVFKKHGTLRNVRVVRDIVTGDSKNYAFVEFKHSSDAGNALKHCDGLHLEGNRIKVEQELERTLKGWVPRRLGGGLGGRKEAGQLRFGGKYRPWAKP 169
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A670JZA3_PODMU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670JZA3_PODMU) HSP 1 Score: 124 bits (311), Expect = 1.200e-31 Identity = 78/197 (39.59%), Postives = 106/197 (53.81%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+ YD + AGSIDGT E PHDRA+ RA ++ ++P + ++ D P TLFVA L TEE+LR + + G +RRIRLVRD+VTG +GYAF EF E + +A R + +R + ++ +L + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct: 9 KEYDPLKAGSIDGTDEEPHDRAVWRAMTAR-----------------YVPNRGVSGD-----------------------PHLTLFVARLNLQTTEEKLREVFSRYGDIRRIRLVRDLVTGFSKGYAFVEFKEERALVKAYRDANKLVIDQREVFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 165
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: UPI001AACCB51 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACCB51) HSP 1 Score: 123 bits (308), Expect = 6.760e-31 Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALR-GPPLRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+ YD + AGSIDGT E PHDRA++RA AR + P K + D P+ TLFVA L + TEE+L+ + G ++RIRLVRDI+TG +GYAF E+ + ++ +A R G L + + ++ +L ++ GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct: 24 KEYDPLKAGSIDGTDEEPHDRAVLRAM--------------LAR---YAPNKGVVGD-----------------------PQLTLFVARLGQETTEEKLKDFFSRYGDIQRIRLVRDIITGFSKGYAFIEYKQESAIKKAYRDGNKLVIDQHEIFVDYELERMLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 180
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: UPI000441E70D (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000441E70D) HSP 1 Score: 122 bits (305), Expect = 1.220e-30 Identity = 76/197 (38.58%), Postives = 107/197 (54.31%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+ YD + AGSIDGT E PHDRA+ RA S+ ++P K ++ D P TLFVA L TE++L+ + + G++R+IRLVRD+VTG +GYAF E+ E + +A R + +R + ++ +L + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct: 9 KEYDPLKAGSIDGTDEEPHDRAVWRAMSAR-----------------YVPNKGVSGD-----------------------PHLTLFVARLNLQTTEDKLKEVFSRYGEIRKIRLVRDLVTGFSKGYAFIEYKEERALMKAHRDANKLIIDQREIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 165
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A151NS57_ALLMI (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NS57_ALLMI) HSP 1 Score: 119 bits (299), Expect = 1.530e-30 Identity = 78/197 (39.59%), Postives = 105/197 (53.30%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPP-LRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+ YD + AGSIDGT E PHDRA+ RA AR ++P K +A D P TLFVA L TEE+++ + + G +R+IRLVRD+VTG +GYAF E+ E + +A R L + + ++ +L + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct: 22 KEYDPLKAGSIDGTDEEPHDRAIWRAM--------------LAR---YVPNKGVAGD-----------------------PHLTLFVARLNLQTTEEKVKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVIDQHEIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 178
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: UPI00074FD6F6 (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=2 Tax=Gekkota TaxID=8560 RepID=UPI00074FD6F6) HSP 1 Score: 121 bits (304), Expect = 1.630e-30 Identity = 77/197 (39.09%), Postives = 101/197 (51.27%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+ YD + AGSIDGT E PHDRA+ W +T R R T G P TLFVA L TEE+L+ + + G +RRIRLVRD +TG RGYAF E+ + + +A R + +R + ++ +L + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct: 9 KEYDPLKAGSIDGTDEEPHDRAI------------------------------------WRAMTARYVPNRGVT----GDPHLTLFVARLALQTTEEKLKEVFSRYGDIRRIRLVRDFITGFSRGYAFIEYKDERALLKAHRDANKLIVDQREVFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 165
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A6J0UE26_9SAUR (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UE26_9SAUR) HSP 1 Score: 121 bits (304), Expect = 1.750e-30 Identity = 78/200 (39.00%), Postives = 108/200 (54.00%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVPRSF 600
+ YD + AGSIDGT E PHDRA+ RA AR ++P K ++ D P TLFVA L TEE+L+ + + G++R++RLVRD+VTG +GYAF E+ E + +A R + +R + ++ +L + GW+PRR GGG GG+KE+GQLRFGGR RP R P S
Sbjct: 9 KEYDPLKAGSIDGTDEEPHDRAVRRAM--------------LAR---YVPSKGVSGD-----------------------PHLTLFVARLSLQTTEEKLKDVFSRYGEIRKLRLVRDLVTGFSKGYAFVEYKEERALMKAHRDANRLVIDQREIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKPISL 168
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A6P9CMX8_PANGU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=5 Tax=Colubroidea TaxID=34989 RepID=A0A6P9CMX8_PANGU) HSP 1 Score: 121 bits (304), Expect = 1.840e-30 Identity = 77/197 (39.09%), Postives = 106/197 (53.81%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPPLRLRGER-LIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVP 591
+ YD + AGSIDGT E PHDRA+ RA S+ ++P K ++ D P TLFVA L TEE+L+ + + G +R+IRLVRD+VTG +GYAF E+ E + +A R + +R + ++ +L + GW+PRR GGG GG+KE+GQLRFGGR RP R P
Sbjct: 14 KEYDPLKAGSIDGTDEEPHDRAVWRAMSAR-----------------YVPNKDVSGD-----------------------PHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANKLIIDQREIFVDFELERTLKGWIPRRLGGGFGGKKESGQLRFGGRDRPFRKP 170
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Match: A0A8D2D6R3_SCIVU (U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=3 Tax=Sciurini TaxID=337752 RepID=A0A8D2D6R3_SCIVU) HSP 1 Score: 120 bits (302), Expect = 2.260e-30 Identity = 83/200 (41.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query: 4 ERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLPVKWLAQDSGWTWLTERADEERRDTVAPRGVPRRTLFVAGLPCDVTEEELRGLLAPCGKVRRIRLVRDIVTGALRGYAFAEFCESASRARALRGPP-LRLRGERLIMEAQLAEVMPGWVPRRFGGGLGGRKEAGQLRFGGRRRPHRVPRSF 600
+ YD + AGSIDGT E PHDRA+ RA AR P + G T G P TLFVA L E++LR + + G +RR+RLVRD+VTG +GYAF EF E + RA R L + + ++ +L + GWVPRR GGGLGG+KE+GQLRFGGR RP R P S
Sbjct: 9 KEYDPLKAGSIDGTDEDPHDRAVWRAM--------------LARYVP---------NRGVT-----------------GDPLLTLFVARLNLQTKEDKLREVFSRYGDIRRLRLVRDLVTGFSKGYAFVEFREERALLRAYRDADGLLVDQHEIFVDYELERTLRGWVPRRLGGGLGGKKESGQLRFGGRDRPFRKPISL 168 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68770.16536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig68770.16536.1 >prot_M-pyrifera_M_contig68770.16536.1 ID=prot_M-pyrifera_M_contig68770.16536.1|Name=mRNA_M-pyrifera_M_contig68770.16536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp MERYDLVVAGSIDGTAERPHDRALVRASSSFCTCILPACRCGAARQPPWLback to top mRNA from alignment at M-pyrifera_M_contig68770:140..745+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig68770.16536.1 ID=mRNA_M-pyrifera_M_contig68770.16536.1|Name=mRNA_M-pyrifera_M_contig68770.16536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig68770:140..745+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig68770:140..745+ >mRNA_M-pyrifera_M_contig68770.16536.1 ID=mRNA_M-pyrifera_M_contig68770.16536.1|Name=mRNA_M-pyrifera_M_contig68770.16536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig68770:140..745+ (Macrocystis pyrifera P11B4 male)back to top |