mRNA_M-pyrifera_M_contig6877.16535.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6877.16535.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI) HSP 1 Score: 605 bits (1560), Expect = 5.620e-195 Identity = 458/863 (53.07%), Postives = 522/863 (60.49%), Query Frame = 1
Query: 1 KVFPLQHLGEIVLRSALPRLRLLLRRQSRTSPLATSPLIATEAIRSCSLLFVAALRLTTREISMSGSXXXXXXXXXXSHPLWETPTSTDFLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVEAATLLAPKELAEEWVEAQLGRVLDEGKDXXXXXXXXXXXXXXXXXXAAAWAALRVLQAAAMAPLRASVSPRVAEAFLRVLLVGQAATPAHQWPSLHTGEQEVIAGATLALRMAPPAATAALAPHVLAAVERVPRPRQRLALLTDVFFLLLVRPARGGRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGRHRRGGTVRAP-EGAMVLVSVLEGDAFVQLVSDAP-RRRRRVLFREEVVAALATACTQVLAAGAAAILSPLSHKAAAVGIGTLARSCSSSISSRXXXXXXXXXXKGLTSLGVESGSAXXXXXXXXXXXXXXXXXXXADKARWADLETWLNCSLSTLEACTRCVNWTSAVGYVGALAYVRLFTLVLRLLCPVSGKKIVGGVAVEGAD-ANR-LFGGLCGGGGTGAGAGEAMGGERAIDDDGAGGEEGNGRLTWARDRLAQVVDDLMWRLREGLPGRDIRLRLLQATCAHVRLLEIVGGDERLTEDSANELISVLQGELGELDAQAGLGGAQPSRPTAFTAGGDSGADSAGRAGGHVGVGSNTSIGGTEATASAMIGGSVAPAATGAXXXXXXXFGVDDEGLMSSGRESXXXXXXXXXXXXXXXXXXXXXXXXXXARKGSMTDVMAHELVVGCLVRLALIAQGETAAEVLSVLEHERGKARVRERLGRGAVGSMEDAVARGIRAVNLLVVQRPAAGPHATTAGSPEALLLKRFLGTMCLGWQAVVQPD 2577
+ FPLQH+GEIVLRSALPR+R LL RQSR + P A A+R+C+ + VAALRL+T S SG +PL + PTS DFLG+ E + L PK+LAEEW+ A+LG +L+ G+ AAWA LRVL AM PLR S +PRVAEAFLRVL+ G+AATP H WPSLH G QEV AGA LALR+A P+ATAALAPHVLAA ERVP+PRQRLALL DVFFLLLVRP R GRAP G R G AP EG +L SVL+ + F QLVSD+P R RR+LFREE VA L T C QVLAAG A LSP + KAAAVGIG LARSC S + K +S+G +G+A XXXXXXXXXXXXX A K RW+DLETWL+CSL+ LEA TRCVNW S GYVG LAYVRL +LVLRLLCP++ G + A A+R L GG GG G + A+DDD G G GRL WAR RLA VVDDLMWRLREGLPGRDIRLRLLQATC HV L +V GD +TEDSANEL+SVLQGELGELDAQAG QP A T+GGD D GH G ++ GG XXXXX XXXXXXXXXXXXXXXXX R GS+TDVMAHELV+GCLVRLAL+ +GETA EV+SVLEHERG+AR RERLGRGAVG ME+ VA+GIRA+ LLV P+ P GSPEA+LLKR + TM LGW AVVQPD
Sbjct: 145 QAFPLQHVGEIVLRSALPRIRRLLHRQSRMV-VDGEPQTAAPAMRACASVMVAALRLST---SPSGKPI--------ENPLLQNPTSVDFLGVKKSALGSGPSGNDAGAEGSTGKE------EEKDLDATLPPKDLAEEWLRARLGGILEGGRGGDALLVET-----------AAWATLRVLHTVAMGPLRVSFAPRVAEAFLRVLVAGKAATPKHLWPSLHAGHQEVAAGAALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVRPGRNGRAPCVGGGSGSGGGERNDDRQGGEG------GTGSSRTG----APREGPKMLASVLDEEWFEQLVSDSPGRSARRLLFREEAVAVLVTTCAQVLAAGVVAALSPAAEKAAAVGIGNLARSCDSRCRATAARSDTSEGHKNGSSVG--NGNANFAAXXXXXXXXXXXXX--AKKGRWSDLETWLDCSLTALEAFTRCVNWNSKTGYVGGLAYVRLLSLVLRLLCPLTAAPADSGDDRDSASTADRVLLGGRSYGGDGKGGVDVGV----ALDDDSTAGG-GRGRLAWARQRLAHVVDDLMWRLREGLPGRDIRLRLLQATCTHVGLSAVVSGDVGVTEDSANELVSVLQGELGELDAQAGFS-TQPRPARAATSGGDEPGDGDD---GHRGTDAHAGRGGXX--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWESISSISGRTGSLTDVMAHELVIGCLVRLALVTEGETAHEVMSVLEHERGRARARERLGRGAVGPMEEIVAKGIRALQLLVF--PSTSPKVAD-GSPEAVLLKRLVRTMDLGWHAVVQPD 932
BLAST of mRNA_M-pyrifera_M_contig6877.16535.1 vs. uniprot
Match: A0A836CDV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV2_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.890e-6 Identity = 122/497 (24.55%), Postives = 170/497 (34.21%), Query Frame = 1
Query: 520 AAWAALRVLQAAAMAPLRASVSPRVAEAFLRVLLVGQAATPAHQWPS----LHTGEQEVIAGATLALRMAPPAATAALAPHVLAAVERVPRPRQRLALLTDVFFLLLVRPARGGRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGRHRRGGTVRAPEGAMVLVSVLEGDAFVQLVS-DAPRRRRR-----------VLFREEVVAALATACTQVLAAGAAAILSPLSHKAAA-VGIGTLARSCSSSISSRXXXXXXXXXXKGLTSLGVESGSAXXXXXXXXXXXXXXXXXXXADKARWADLETWLNCSLSTLEACTRCVNWT--SAVGYVGALAYVRLFTLVLRLLCPVSGKKIVGGVAVEGADANRLFGGLCGGGGTGAGAGEAMGGERAIDDDGAGGE-EGNGRLTWARDRLAQVVDDLMWRLREGLPGRDIRLRLLQATCAHVRLLEIVGG---DERLT----------EDSANELISVLQGELGELDAQA 1911
A + LRVL A + P RA ++P VA L+ G+ + R APP A L ++ AV P P QRL L+ + FF ++V GGRA +L ++LE D +++ DAP V FREE+VAAL C VL AGA AI + + A A G S S + + L+ +G A RW DLE W+ S + L A CV W +A GA Y RL TL+LRL A+G I + G+ RL A +D L W+L +G+PGR R+ LL A C ++ + G DE+ +D+A +L++ + EL LDA A
Sbjct: 418 AVFTTLRVLHAPPLRPQRALLAPAVAXXXXXXXXXXXXXXXXXXXXXXXXXLNAGQAALXXXXXXXXRWAPPQALPPLLAALVPAVALCPEPGQRLGLMAEAFFAVMVCMPGGGRANKPA-------------------------------------------ILEAILESDWLHGVLNADAPTAAXXXXXXXXXXXXXVPFREELVAALTHTCAYVLTAGATAIAAATAPSADADSGDDVNGSSLPSPVQQQLP----------LSGVG------------RYPLAPHAPDAAAAAAERWCDLERWVTMSGAVLHATGLCVGWDGGAASASAGADGYTRLLTLILRLTSXXXXXXXXXXXXXXXXXXXXXX---------------ALGSPSPIFSPNPRPQLSGDARLARAAAAHVPRLDQLGWKLAQGMPGRRARVALLGALCRYLADVSGAAGQAADEQAARGVRLRPGEEDDAALDLVARVSVELAALDAPA 834 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6877.16535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6877.16535.1 >prot_M-pyrifera_M_contig6877.16535.1 ID=prot_M-pyrifera_M_contig6877.16535.1|Name=mRNA_M-pyrifera_M_contig6877.16535.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=859bp KVFPLQHLGEIVLRSALPRLRLLLRRQSRTSPLATSPLIATEAIRSCSLLback to top mRNA from alignment at M-pyrifera_M_contig6877:5667..13333- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6877.16535.1 ID=mRNA_M-pyrifera_M_contig6877.16535.1|Name=mRNA_M-pyrifera_M_contig6877.16535.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7667bp|location=Sequence derived from alignment at M-pyrifera_M_contig6877:5667..13333- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6877:5667..13333- >mRNA_M-pyrifera_M_contig6877.16535.1 ID=mRNA_M-pyrifera_M_contig6877.16535.1|Name=mRNA_M-pyrifera_M_contig6877.16535.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5154bp|location=Sequence derived from alignment at M-pyrifera_M_contig6877:5667..13333- (Macrocystis pyrifera P11B4 male)back to top |