mRNA_M-pyrifera_M_contig68747.16533.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68747.16533.1
Unique NamemRNA_M-pyrifera_M_contig68747.16533.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68747.16533.1 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.190e-8
Identity = 44/188 (23.40%), Postives = 88/188 (46.81%), Query Frame = 1 
Query:   25 DNVEAHYSMWRSKFLAYLSSLGCLHVLSSTANPVMVGDMRVSPEELASRHSPQEIRDARLVYGLMMEAMTGYDMAEFRMQKAMSPSGAWEELEDYYMPKTIAATRRLRREFDTIRMAEDENPLLFLGRVDKAADELVMLGCGKSTEEVNRHIVTNLSSLYTIQSKSILSRPSIPRSEIDEIIRDAYAN 588
            ++++    +++S  +A  +  G   V+ S  + + VG    +  +L ++     +  A   + L++ +++ Y      +    SPSG W     YY P+  A  +RL +E+ +  M   E P  + GR       L   G      E N H+V+ LSS YT++ + + +   +   +I++ ++DAYA+
Sbjct:  148 NDLQQKLLIFKSSMVARFAQEGVHEVVMSDED-IPVGKHGANMAQLRTQFDALRVAKAIAAWNLLISSIS-YMPILSEVVSDGSPSGRWMIFLKYYEPQARAEKKRLLKEYHSFYMKSGEIPQEYFGRFYILRSRLASHGTIYPDNEANDHLVSALSSDYTLERRMLHNMADLTLQKIEQSVKDAYAD 333
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68747.16533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR49_9PHAE9.190e-823.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68747contigM-pyrifera_M_contig68747:367..960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size594
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.787126-CDS-M-pyrifera_M_contig68747:366..9601622816579.787126-CDS-M-pyrifera_M_contig68747:366..960Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68747 367..960 -
1692278058.2505326-CDS-M-pyrifera_M_contig68747:366..9601692278058.2505326-CDS-M-pyrifera_M_contig68747:366..960Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68747 367..960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68747.16533.1prot_M-pyrifera_M_contig68747.16533.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68747 367..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68747.16533.1

>prot_M-pyrifera_M_contig68747.16533.1 ID=prot_M-pyrifera_M_contig68747.16533.1|Name=mRNA_M-pyrifera_M_contig68747.16533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
SQSRPPKFDNVEAHYSMWRSKFLAYLSSLGCLHVLSSTANPVMVGDMRVS
PEELASRHSPQEIRDARLVYGLMMEAMTGYDMAEFRMQKAMSPSGAWEEL
EDYYMPKTIAATRRLRREFDTIRMAEDENPLLFLGRVDKAADELVMLGCG
KSTEEVNRHIVTNLSSLYTIQSKSILSRPSIPRSEIDEIIRDAYANDK
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mRNA from alignment at M-pyrifera_M_contig68747:367..960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68747.16533.1 ID=mRNA_M-pyrifera_M_contig68747.16533.1|Name=mRNA_M-pyrifera_M_contig68747.16533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig68747:367..960- (Macrocystis pyrifera P11B4 male)
TCCCAGTCGAGACCCCCGAAGTTCGATAACGTAGAGGCCCACTATAGCAT
GTGGCGTAGTAAGTTTCTGGCATACCTATCATCGCTTGGGTGCTTGCATG
TACTCAGTAGCACAGCAAACCCAGTTATGGTGGGTGACATGAGGGTTTCG
CCGGAGGAATTAGCCTCCAGACATTCCCCCCAGGAGATTAGGGACGCGAG
ATTGGTGTATGGATTGATGATGGAGGCCATGACAGGATACGATATGGCTG
AGTTTAGAATGCAAAAGGCAATGTCTCCGAGTGGTGCTTGGGAGGAGTTG
GAAGACTATTATATGCCGAAGACGATAGCCGCAACTCGTAGATTGAGGAG
GGAATTTGATACAATCCGAATGGCCGAGGATGAAAACCCCTTGCTATTCC
TAGGAAGGGTGGACAAGGCTGCAGATGAGCTGGTAATGCTAGGATGTGGT
AAGAGTACGGAGGAAGTAAACCGCCACATTGTCACCAACCTCTCATCTTT
ATATACTATTCAAAGCAAGTCCATTCTTTCCCGCCCTTCCATCCCCCGCT
CCGAGATCGACGAGATCATCCGTGACGCGTATGCTAACGACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68747:367..960-

>mRNA_M-pyrifera_M_contig68747.16533.1 ID=mRNA_M-pyrifera_M_contig68747.16533.1|Name=mRNA_M-pyrifera_M_contig68747.16533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig68747:367..960- (Macrocystis pyrifera P11B4 male)
TCCCAGTCGAGACCCCCGAAGTTCGATAACGTAGAGGCCCACTATAGCAT
GTGGCGTAGTAAGTTTCTGGCATACCTATCATCGCTTGGGTGCTTGCATG
TACTCAGTAGCACAGCAAACCCAGTTATGGTGGGTGACATGAGGGTTTCG
CCGGAGGAATTAGCCTCCAGACATTCCCCCCAGGAGATTAGGGACGCGAG
ATTGGTGTATGGATTGATGATGGAGGCCATGACAGGATACGATATGGCTG
AGTTTAGAATGCAAAAGGCAATGTCTCCGAGTGGTGCTTGGGAGGAGTTG
GAAGACTATTATATGCCGAAGACGATAGCCGCAACTCGTAGATTGAGGAG
GGAATTTGATACAATCCGAATGGCCGAGGATGAAAACCCCTTGCTATTCC
TAGGAAGGGTGGACAAGGCTGCAGATGAGCTGGTAATGCTAGGATGTGGT
AAGAGTACGGAGGAAGTAAACCGCCACATTGTCACCAACCTCTCATCTTT
ATATACTATTCAAAGCAAGTCCATTCTTTCCCGCCCTTCCATCCCCCGCT
CCGAGATCGACGAGATCATCCGTGACGCGTATGCTAACGACAAGTCCCAG
TCGAGACCCCCGAAGTTCGATAACGTAGAGGCCCACTATAGCATGTGGCG
TAGTAAGTTTCTGGCATACCTATCATCGCTTGGGTGCTTGCATGTACTCA
GTAGCACAGCAAACCCAGTTATGGTGGGTGACATGAGGGTTTCGCCGGAG
GAATTAGCCTCCAGACATTCCCCCCAGGAGATTAGGGACGCGAGATTGGT
GTATGGATTGATGATGGAGGCCATGACAGGATACGATATGGCTGAGTTTA
GAATGCAAAAGGCAATGTCTCCGAGTGGTGCTTGGGAGGAGTTGGAAGAC
TATTATATGCCGAAGACGATAGCCGCAACTCGTAGATTGAGGAGGGAATT
TGATACAATCCGAATGGCCGAGGATGAAAACCCCTTGCTATTCCTAGGAA
GGGTGGACAAGGCTGCAGATGAGCTGGTAATGCTAGGATGTGGTAAGAGT
ACGGAGGAAGTAAACCGCCACATTGTCACCAACCTCTCATCTTTATATAC
TATTCAAAGCAAGTCCATTCTTTCCCGCCCTTCCATCCCCCGCTCCGAGA
TCGACGAGATCATCCGTGACGCGTATGCTAACGACAAG
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