mRNA_M-pyrifera_M_contig687.16519.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig687.16519.1
Unique NamemRNA_M-pyrifera_M_contig687.16519.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig687.16519.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.030e-27
Identity = 188/525 (35.81%), Postives = 230/525 (43.81%), Query Frame = 1 
Query:    1 VCVAAGDGSLARDVLRWMKIEGFKASEDAYMLAIKACCVVGFGPES------------SPASG---LPAALPDADVGA------AGVGGGVIGDGEGGXXXXXXXXXXXAVATEASRVSAVPTEARSGYR--------GDRDDVSLSSPASSPTVSSSVAAVASTSPSYXXXXXXXXXIGXXXXXXXXXXXAATLDDGVDEQPEKDDEGAEPRHGEEGEKEEGKQEEQE-FQWFVVPGGREHPPSFDEDGNEEG-----------WTGGVGAXXXXXXXGWVAETSA-----ARLGDVTNAGVSR--------APPAETASVSRRRGVDVXXXXXXXVGEGGLVSGGE--GASGGVGRGEERKVEAEARYGIAIEEREEKDSVVGSGNDSGGVNDSGSVSGGXXXXXXXXXXXXDRINPGDSASAGVDLGQGGVDWRRARILLDDMETAEDLPTPPPAGAYEAVLDACVAAGRVGDALEVAQAMAMAGHRPNPGLVSRLTSSHADVLSKEMREMEEAAAAPMDEW 1407
            +C AAGDGSLARDVLRWMK+EGF+ASE+AYMLAI+ACC      +S             PA+    LP   P    GA      AGV   +  +GE               A E+ + SA                  GD  D  +++     T  +SV  V   + S                  XXXXX         ++P+       P  GEE   EE K EE+   +W V+PGGR  PP FDEDGNE+            WT G GA   XXXXG V          +R G+VT A  SR        +P +    VSR   V+V      X             G S G GR                  R + D+VV                  XXXXXXXXXXXX                    DW RAR +LDDM  A+ LP PPP  A+ AVL AC +AGRVG+ALE+AQ M  AG  P+  L++RL +SHAD L +E REMEEAAA P +EW
Sbjct:  953 MCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCNPTVPQDSLAAPQQQSPFTTPPATSRQRLPLRPPAVANGAMSPEDLAGVRRKLFSEGE---------------APESEQHSAAXXXXXXXXXXXXXXRDDGDXGDNGVAAVLRLATADTSVPGVGDPASSVDEDVERGRVAEKVPAAAXXXXXXXXXXSLNPQRPQ-------PPLGEE---EERKAEERPGLEWVVIPGGRASPPEFDEDGNEKNVAPPGTMGGAAWTTG-GATAGXXXXGAVGFGGGDVAPFSREGEVTTAATSRRDGDGGTTSPASARGDVSRAGAVNVLSPLAAXXXXXXXXXXXXRGGRSSGQGR----------------TPRVDPDAVVAXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWERARAILDDMTAADHLP-PPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSIALMTRLMASHADELDRERREMEEAAAEPAEEW 1432
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BLAST of mRNA_M-pyrifera_M_contig687.16519.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.350e-23
Identity = 177/526 (33.65%), Postives = 217/526 (41.25%), Query Frame = 1 
Query:    1 VCVAAGDGSLARDVLRWMKIEGFKASEDAYMLAIKACCVVGFGPESSPASG----------------LPAALPDADVGA------AGVGGGVIGDGEGGXXXXXXXXXXXAVATEASRVSAVPTEARSGYR--------GDRDDVSLSSPASSPTVSSSVAAVASTSPSYXXXXXXXXXIGXXXXXXXXXXXAATLDDGVDEQPEKDDEGAEPRHGEEGEKEEGKQEEQEFQWFVVPGGREHPPSFDEDGNEEGWT-------------------GGVGAXXXXXXXGWVAETSAARLGDVTNAGVSR--------APPAETASVSRRRGVDVXXXXXXXVGEGGLVSGGEGASGGVGRGEERKVEAEARYGIAIEEREEKDSVVGSGNDSGGVNDSGSVSGGXXXXXXXXXXXXDRINPGDSASAGVDLGQGGVDWRRARILLDDMETAEDLPTPPPAGAYEAVLDACVAAGRVGDALEVAQAMAMAGHRPNPGLVSRLTSSHADVLSKEMREMEEAAAAPMDEW 1407
            +C AAGDGSLARDVLRWMK+EGF+ASE+AYMLAI+ACC     P+ SPA+                 LP   P    GA      AGV   +  +GE               A E+ + SA                  GD    ++  PA++ T    V   AS+             +  XXXXXXXXXX                  AE R               E +W V+PGGR  PP FDEDGNE+  T                   GG GA       G        R G+ T A  SR        +P +  A VSR   V+V                   +S                 G  +  R + D+                    XXXXXXXXXXXX                    DW RAR +LDDM  A+ LP PPP  A+ AVL AC +AGRVG+ALE+AQ M  AG  P+  L++RL +SHAD L +E REMEEAAA P +EW
Sbjct:  695 MCAAAGDGSLARDVLRWMKLEGFQASEEAYMLAIEACCNPAV-PQDSPAAPQQPSSFTTPPATSRQRLPLPPPTFASGATSPEDLAGVRRKLFSEGE---------------APESEQHSAAXXXXXXXXXXXXXXXXXGDDGVAAVLRPATAGTSVPGVGDPASSVDEDVERGRVAEEMPAXXXXXXXXXXXXXXXXXXXXXXXXXXRKAERRP--------------ELEWVVIPGGRVSPPEFDEDGNEKNVTPPGTMGGAAWATGGAKAGPGGSGAVGFGGGDG----APFPREGEATTAAASRRDGDGGTTSPASARADVSRAGAVNVLSPLAAAXXXXXXXXXXGRSS-----------------GQRLTPRVDPDAXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADWERARAILDDMTAADHLP-PPPEEAFRAVLGACDSAGRVGEALEIAQVMVGAGFSPSISLMTRLIASHADELDRERREMEEAAAEPAEEW 1166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig687.16519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE4.030e-2735.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI1.350e-2333.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig687contigM-pyrifera_M_contig687:572..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue8.3e-26
Seed eggNOG ortholog2880.D7FX74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1419
Cds size1419
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.1359432-CDS-M-pyrifera_M_contig687:571..16781622816579.1359432-CDS-M-pyrifera_M_contig687:571..1678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig687 572..1678 +
1692278057.9254754-CDS-M-pyrifera_M_contig687:571..16781692278057.9254754-CDS-M-pyrifera_M_contig687:571..1678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig687 572..1678 +
1622816579.1476004-CDS-M-pyrifera_M_contig687:1864..21761622816579.1476004-CDS-M-pyrifera_M_contig687:1864..2176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig687 1865..2176 +
1692278057.9360821-CDS-M-pyrifera_M_contig687:1864..21761692278057.9360821-CDS-M-pyrifera_M_contig687:1864..2176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig687 1865..2176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig687.16519.1prot_M-pyrifera_M_contig687.16519.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig687 572..2176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig687.16519.1

>prot_M-pyrifera_M_contig687.16519.1 ID=prot_M-pyrifera_M_contig687.16519.1|Name=mRNA_M-pyrifera_M_contig687.16519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=473bp
VCVAAGDGSLARDVLRWMKIEGFKASEDAYMLAIKACCVVGFGPESSPAS
GLPAALPDADVGAAGVGGGVIGDGEGGGGAEGGSGGEGAVATEASRVSAV
PTEARSGYRGDRDDVSLSSPASSPTVSSSVAAVASTSPSYSAAATATAAI
GSPTAAATTGSAAATLDDGVDEQPEKDDEGAEPRHGEEGEKEEGKQEEQE
FQWFVVPGGREHPPSFDEDGNEEGWTGGVGAGGGGGSGGWVAETSAARLG
DVTNAGVSRAPPAETASVSRRRGVDVDVDVTVDVGEGGLVSGGEGASGGV
GRGEERKVEAEARYGIAIEEREEKDSVVGSGNDSGGVNDSGSVSGGDSGS
VGIGDSGSDRINPGDSASAGVDLGQGGVDWRRARILLDDMETAEDLPTPP
PAGAYEAVLDACVAAGRVGDALEVAQAMAMAGHRPNPGLVSRLTSSHADV
LSKEMREMEEAAAAPMDEWSRD*
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mRNA from alignment at M-pyrifera_M_contig687:572..2176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig687.16519.1 ID=mRNA_M-pyrifera_M_contig687.16519.1|Name=mRNA_M-pyrifera_M_contig687.16519.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at M-pyrifera_M_contig687:572..2176+ (Macrocystis pyrifera P11B4 male)
GTGTGTGTTGCCGCGGGCGACGGGTCGCTGGCGCGGGACGTGCTCCGGTG
GATGAAGATTGAGGGCTTCAAGGCCAGCGAGGACGCGTACATGCTCGCCA
TCAAGGCGTGCTGCGTCGTCGGTTTCGGTCCGGAATCATCCCCCGCCTCC
GGTTTGCCAGCCGCTTTGCCTGACGCGGATGTCGGTGCTGCTGGTGTTGG
TGGTGGCGTTATTGGTGATGGTGAGGGTGGCGGTGGCGCCGAGGGTGGGA
GTGGTGGTGAAGGTGCTGTCGCCACGGAGGCTTCGCGTGTTTCTGCCGTG
CCGACGGAAGCGCGTAGCGGTTACCGCGGTGACAGAGATGATGTTAGCTT
GTCGTCGCCGGCATCGTCACCGACGGTGTCGTCGTCCGTCGCTGCCGTCG
CCTCCACGAGCCCTTCCTATTCCGCCGCTGCTACTGCTACTGCTGCTATC
GGTTCTCCTACTGCTGCTGCTACTACTGGTTCTGCTGCTGCTACCCTCGA
CGATGGCGTGGACGAACAGCCCGAGAAGGATGATGAAGGGGCAGAGCCGC
GCCACGGAGAAGAGGGAGAGAAGGAGGAGGGTAAGCAGGAGGAGCAAGAG
TTCCAGTGGTTCGTTGTCCCGGGAGGGCGTGAACACCCCCCATCGTTTGA
CGAGGACGGCAACGAGGAGGGTTGGACCGGCGGGGTCGGAGCCGGCGGCG
GCGGCGGTAGCGGTGGATGGGTCGCGGAGACCTCAGCCGCCCGGTTGGGC
GACGTTACAAACGCCGGGGTGTCACGGGCTCCCCCCGCTGAGACCGCCAG
CGTGAGCAGAAGACGCGGTGTCGATGTCGATGTCGATGTCACTGTAGATG
TTGGTGAAGGTGGACTTGTCAGCGGAGGAGAAGGCGCTTCGGGGGGGGTG
GGCCGAGGGGAGGAGCGGAAGGTTGAGGCCGAGGCTCGTTACGGCATCGC
GATAGAAGAGAGGGAGGAGAAGGATAGCGTAGTGGGGAGCGGCAACGATA
GTGGTGGCGTTAACGATAGCGGTAGCGTTAGCGGTGGCGATAGCGGTAGC
GTTGGCATTGGCGACAGCGGTAGCGATCGCATAAACCCGGGCGACAGCGC
GAGTGCTGTTGGTGGCGGGACAGCCCGAAAGCGCGTCTGGCCTGCGACCG
GTTCTGTCAACGGTTCTGCTAATTACTCTTTCAACGGTTCTGCCATGGAA
TCAGCCGCTAGTGGCCGGGGGAACACCCCGGACCGCTCGAGGGGCGAGGC
GAACGGCCCCGCAGACGGTGACCTGGGGGGTGGGGAGGGCGAGGGTGTTG
ACCTCGGACAGGGCGGGGTCGACTGGCGACGGGCGAGAATCCTCCTTGAT
GACATGGAGACGGCCGAAGACCTCCCGACCCCCCCCCCGGCGGGGGCGTA
CGAGGCGGTGCTCGACGCGTGCGTCGCCGCGGGGAGGGTGGGGGACGCGC
TCGAGGTGGCGCAGGCCATGGCCATGGCGGGGCACAGACCTAATCCGGGC
CTGGTGTCTCGCTTGACATCAAGCCACGCGGATGTGCTCAGCAAGGAAAT
GAGGGAAATGGAGGAGGCTGCGGCTGCCCCCATGGACGAATGGAGCCGCG
ATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig687:572..2176+

>mRNA_M-pyrifera_M_contig687.16519.1 ID=mRNA_M-pyrifera_M_contig687.16519.1|Name=mRNA_M-pyrifera_M_contig687.16519.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2838bp|location=Sequence derived from alignment at M-pyrifera_M_contig687:572..2176+ (Macrocystis pyrifera P11B4 male)
GTGTGTGTTGCCGCGGGCGACGGGTCGCTGGCGCGGGACGTGCTCCGGTG
GATGAAGATTGAGGGCTTCAAGGCCAGCGAGGACGCGTACATGCTCGCCA
TCAAGGCGTGCTGCGTCGTCGGTTTCGGTCCGGAATCATCCCCCGCCTCC
GGTTTGCCAGCCGCTTTGCCTGACGCGGATGTCGGTGCTGCTGGTGTTGG
TGGTGGCGTTATTGGTGATGGTGAGGGTGGCGGTGGCGCCGAGGGTGGGA
GTGGTGGTGAAGGTGCTGTCGCCACGGAGGCTTCGCGTGTTTCTGCCGTG
CCGACGGAAGCGCGTAGCGGTTACCGCGGTGACAGAGATGATGTTAGCTT
GTCGTCGCCGGCATCGTCACCGACGGTGTCGTCGTCCGTCGCTGCCGTCG
CCTCCACGAGCCCTTCCTATTCCGCCGCTGCTACTGCTACTGCTGCTATC
GGTTCTCCTACTGCTGCTGCTACTACTGGTTCTGCTGCTGCTACCCTCGA
CGATGGCGTGGACGAACAGCCCGAGAAGGATGATGAAGGGGCAGAGCCGC
GCCACGGAGAAGAGGGAGAGAAGGAGGAGGGTAAGCAGGAGGAGCAAGAG
TTCCAGTGGTTCGTTGTCCCGGGAGGGCGTGAACACCCCCCATCGTTTGA
CGAGGACGGCAACGAGGAGGGTTGGACCGGCGGGGTCGGAGCCGGCGGCG
GCGGCGGTAGCGGTGGATGGGTCGCGGAGACCTCAGCCGCCCGGTTGGGC
GACGTTACAAACGCCGGGGTGTCACGGGCTCCCCCCGCTGAGACCGCCAG
CGTGAGCAGAAGACGCGGTGTCGATGTCGATGTCGATGTCACTGTAGATG
TTGGTGAAGGTGGACTTGTCAGCGGAGGAGAAGGCGCTTCGGGGGGGGTG
GGCCGAGGGGAGGAGCGGAAGGTTGAGGCCGAGGCTCGTTACGGCATCGC
GATAGAAGAGAGGGAGGAGAAGGATAGCGTAGTGGGGAGCGGCAACGATA
GTGGTGGCGTTAACGATAGCGGTAGCGTTAGCGGTGGCGATAGCGGTAGC
GTTGGCATTGGCGACAGCGGTAGCGATCGCATAAACCCGGGCGACAGCGC
GAGTGCTGTGTGTGTTGCCGCGGGCGACGGGTCGCTGGCGCGGGACGTGC
TCCGGTGGATGAAGATTGAGGGCTTCAAGGCCAGCGAGGACGCGTACATG
CTCGCCATCAAGGCGTGCTGCGTCGTCGGTTTCGGTCCGGAATCATCCCC
CGCCTCCGGTTTGCCAGCCGCTTTGCCTGACGCGGATGTCGGTGCTGCTG
GTGTTGGTGGTGGCGTTATTGGTGATGGTGAGGGTGGCGGTGGCGCCGAG
GGTGGGAGTGGTGGTGAAGGTGCTGTCGCCACGGAGGCTTCGCGTGTTTC
TGCCGTGCCGACGGAAGCGCGTAGCGGTTACCGCGGTGACAGAGATGATG
TTAGCTTGTCGTCGCCGGCATCGTCACCGACGGTGTCGTCGTCCGTCGCT
GCCGTCGCCTCCACGAGCCCTTCCTATTCCGCCGCTGCTACTGCTACTGC
TGCTATCGGTTCTCCTACTGCTGCTGCTACTACTGGTTCTGCTGCTGCTA
CCCTCGACGATGGCGTGGACGAACAGCCCGAGAAGGATGATGAAGGGGCA
GAGCCGCGCCACGGAGAAGAGGGAGAGAAGGAGGAGGGTAAGCAGGAGGA
GCAAGAGTTCCAGTGGTTCGTTGTCCCGGGAGGGCGTGAACACCCCCCAT
CGTTTGACGAGGACGGCAACGAGGAGGGTTGGACCGGCGGGGTCGGAGCC
GGCGGCGGCGGCGGTAGCGGTGGATGGGTCGCGGAGACCTCAGCCGCCCG
GTTGGGCGACGTTACAAACGCCGGGGTGTCACGGGCTCCCCCCGCTGAGA
CCGCCAGCGTGAGCAGAAGACGCGGTGTCGATGTCGATGTCGATGTCACT
GTAGATGTTGGTGAAGGTGGACTTGTCAGCGGAGGAGAAGGCGCTTCGGG
GGGGGTGGGCCGAGGGGAGGAGCGGAAGGTTGAGGCCGAGGCTCGTTACG
GCATCGCGATAGAAGAGAGGGAGGAGAAGGATAGCGTAGTGGGGAGCGGC
AACGATAGTGGTGGCGTTAACGATAGCGGTAGCGTTAGCGGTGGCGATAG
CGGTAGCGTTGGCATTGGCGACAGCGGTAGCGATCGCATAAACCCGGGCG
ACAGCGCGAGTGCTGGTGTTGACCTCGGACAGGGCGGGGTCGACTGGCGA
CGGGCGAGAATCCTCCTTGATGACATGGAGACGGCCGAAGACCTCCCGAC
CCCCCCCCCGGCGGGGGCGTACGAGGCGGTGCTCGACGCGTGCGTCGCCG
CGGGGAGGGTGGGGGACGCGCTCGAGGTGGCGCAGGCCATGGCCATGGCG
GGGCACAGACCTAATCCGGGCCTGGTGTCTCGCTTGACATCAAGCCACGC
GGATGTGCTCAGCAAGGAAATGAGGGAAATGGAGGAGGCTGCGGCTGCCC
CCATGGACGAATGGAGCCGCGATTAGGGTGTTGACCTCGGACAGGGCGGG
GTCGACTGGCGACGGGCGAGAATCCTCCTTGATGACATGGAGACGGCCGA
AGACCTCCCGACCCCCCCCCCGGCGGGGGCGTACGAGGCGGTGCTCGACG
CGTGCGTCGCCGCGGGGAGGGTGGGGGACGCGCTCGAGGTGGCGCAGGCC
ATGGCCATGGCGGGGCACAGACCTAATCCGGGCCTGGTGTCTCGCTTGAC
ATCAAGCCACGCGGATGTGCTCAGCAAGGAAATGAGGGAAATGGAGGAGG
CTGCGGCTGCCCCCATGGACGAATGGAGCCGCGATTAG
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