mRNA_M-pyrifera_M_contig68683.16513.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68683.16513.1
Unique NamemRNA_M-pyrifera_M_contig68683.16513.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: D7FNG3_ECTSI (Flavin-binding monooxygenase-like subfamily n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG3_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.370e-35
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            KRVLVVGSGESGSDICNEISK+A+STGLAIRGKHGHLIPRKQ DGR TDLNTNRCRYSNPYVLG WV
Sbjct:  203 KRVLVVGSGESGSDICNEISKFASSTGLAIRGKHGHLIPRKQADGRVTDLNTNRCRYSNPYVLGDWV 269          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A7S0TC76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TC76_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.390e-30
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            +RVLVVG+GESGSDICNEI++ A    +A+RGKHGHLIPRKQ DGR TDLNTNRCRYSNPYVLG WV
Sbjct:  271 QRVLVVGAGESGSDICNEIAEEADKVAIAVRGKHGHLIPRKQADGRVTDLNTNRCRYSNPYVLGDWV 337          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A836C7U5_9STRA (Flavin-binding monooxygenase-like subfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.440e-29
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            KRVLVVG+GESGSDICNEIS++A +TG+ IR KHGH+IPR Q  GR TDLNTNRCRYSNPYVLG WV
Sbjct:  196 KRVLVVGAGESGSDICNEISRHAAATGMGIRRKHGHIIPRVQRHGRVTDLNTNRCRYSNPYVLGAWV 262          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A6V2ZPT4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2ZPT4_HETAK)

HSP 1 Score: 117 bits (293), Expect = 2.910e-29
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            ++V+VVG+GESGSDICNEISK+A+   +  RGKHGHLIPRKQ DGR TDLNTNRCRYSNPYV G W+
Sbjct:  207 QKVMVVGAGESGSDICNEISKHASKCAIVCRGKHGHLIPRKQADGRVTDLNTNRCRYSNPYVFGDWI 273          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: F0XYZ2_AURAN (SET domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYZ2_AURAN)

HSP 1 Score: 117 bits (293), Expect = 4.230e-29
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            +RVL+VG+GESGSDICNEI+  A    + +RGKHGHLIPRKQ DGR TDLNTNRCRYSNPYVLG WV
Sbjct:  649 QRVLIVGAGESGSDICNEIADEAAKVAIVVRGKHGHLIPRKQADGRVTDLNTNRCRYSNPYVLGDWV 715          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A7S2UXY2_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXY2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.140e-29
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLG---GWV 201
            KRV++VG+GESGSDICNEISK+A+ST +  RGKHGHLIPR Q DGR TDLNTNRCRYSNPYV G   GW 
Sbjct:  192 KRVMIVGAGESGSDICNEISKHASSTAIVCRGKHGHLIPRIQTDGRVTDLNTNRCRYSNPYVFGDAIGWT 261          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A8J2SBC1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBC1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.500e-29
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            KRVLVVG+GESGSDI NEI+  A+   + +RGKHGHLIPRKQ DGR TDLNTNRCRYSNPYVLG WV
Sbjct:  261 KRVLVVGAGESGSDITNEIASEASKVAIVVRGKHGHLIPRKQADGRVTDLNTNRCRYSNPYVLGDWV 327          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A7S2HPS1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPS1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.550e-28
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLGGWV 201
            KRVLV+G+GESGSDICNEI+  A    + +R KHGHLIPRKQ DGR TDLNTNRCRYSNPY LG WV
Sbjct:  288 KRVLVIGAGESGSDICNEIASEAAQVAIVVRNKHGHLIPRKQTDGRVTDLNTNRCRYSNPYCLGDWV 354          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A815V4B2_ADIRI (Flavin-containing monooxygenase n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815V4B2_ADIRI)

HSP 1 Score: 63.2 bits (152), Expect = 5.030e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLG 192
            KRV +VGSGES SD+    +KY   + ++IR  HG ++PR  +DGR +DL T+R  +SNP+  G
Sbjct:  177 KRVCIVGSGESASDMALASAKYGKQSFISIRKDHGAIVPR-YMDGRPSDLETSRALHSNPHAFG 239          
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Match: A0A5B1BH25_9FLAO (SidA/IucD/PvdA family monooxygenase n=1 Tax=Aquimarina sp. RZ0 TaxID=2607730 RepID=A0A5B1BH25_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 3.990e-8
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDLNTNRCRYSNPYVLG 192
            KRVLVVG GESGSDI  E+SK A    +++R   G ++PRK+ +G A D++T+R  ++ P   G
Sbjct:  171 KRVLVVGGGESGSDIALEVSKVAEKCWVSLRNSTGWIVPRKR-NGHAADISTHRGIWTLPAEFG 233          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68683.16513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG3_ECTSI1.370e-3592.54Flavin-binding monooxygenase-like subfamily n=2 Ta... [more]
A0A7S0TC76_9STRA3.390e-3079.10Hypothetical protein (Fragment) n=1 Tax=Chrysocyst... [more]
A0A836C7U5_9STRA1.440e-2979.10Flavin-binding monooxygenase-like subfamily n=1 Ta... [more]
A0A6V2ZPT4_HETAK2.910e-2974.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0XYZ2_AURAN4.230e-2976.12SET domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2UXY2_9STRA5.140e-2975.71Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A8J2SBC1_9STRA9.500e-2977.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2HPS1_9STRA2.550e-2874.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A815V4B2_ADIRI5.030e-1046.88Flavin-containing monooxygenase n=1 Tax=Adineta ri... [more]
A0A5B1BH25_9FLAO3.990e-846.88SidA/IucD/PvdA family monooxygenase n=1 Tax=Aquima... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68683contigM-pyrifera_M_contig68683:1029..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue1.9e-29
Seed eggNOG ortholog2880.D7FNG3
KEGG rclassRC02233
KEGG koko:K00485
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,map00982,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
EC1.14.13.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.5410442-CDS-M-pyrifera_M_contig68683:1028..12291622816578.5410442-CDS-M-pyrifera_M_contig68683:1028..1229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68683 1029..1229 -
1692278057.7391055-CDS-M-pyrifera_M_contig68683:1028..12291692278057.7391055-CDS-M-pyrifera_M_contig68683:1028..1229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68683 1029..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68683.16513.1prot_M-pyrifera_M_contig68683.16513.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68683 1029..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68683.16513.1

>prot_M-pyrifera_M_contig68683.16513.1 ID=prot_M-pyrifera_M_contig68683.16513.1|Name=mRNA_M-pyrifera_M_contig68683.16513.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
KRVLVVGSGESGSDICNEISKYATSTGLAIRGKHGHLIPRKQVDGRATDL
NTNRCRYSNPYVLGGWV
back to top

mRNA from alignment at M-pyrifera_M_contig68683:1029..1229-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68683.16513.1 ID=mRNA_M-pyrifera_M_contig68683.16513.1|Name=mRNA_M-pyrifera_M_contig68683.16513.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig68683:1029..1229- (Macrocystis pyrifera P11B4 male)
AAGCGCGTTCTGGTGGTGGGGTCCGGGGAGTCGGGGTCTGACATCTGTAA CGAGATCAGCAAGTACGCTACGTCCACGGGGCTGGCCATCCGCGGCAAGC ACGGACACCTCATCCCGCGAAAGCAGGTGGACGGGCGCGCGACGGACCTG AACACCAACCGCTGCCGCTACTCGAACCCGTACGTCCTCGGCGGCTGGGT C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68683:1029..1229-

>mRNA_M-pyrifera_M_contig68683.16513.1 ID=mRNA_M-pyrifera_M_contig68683.16513.1|Name=mRNA_M-pyrifera_M_contig68683.16513.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig68683:1029..1229- (Macrocystis pyrifera P11B4 male)
AAGCGCGTTCTGGTGGTGGGGTCCGGGGAGTCGGGGTCTGACATCTGTAA
CGAGATCAGCAAGTACGCTACGTCCACGGGGCTGGCCATCCGCGGCAAGC
ACGGACACCTCATCCCGCGAAAGCAGGTGGACGGGCGCGCGACGGACCTG
AACACCAACCGCTGCCGCTACTCGAACCCGTACGTCCTCGGCGGCTGGGT
CAAGCGCGTTCTGGTGGTGGGGTCCGGGGAGTCGGGGTCTGACATCTGTA
ACGAGATCAGCAAGTACGCTACGTCCACGGGGCTGGCCATCCGCGGCAAG
CACGGACACCTCATCCCGCGAAAGCAGGTGGACGGGCGCGCGACGGACCT
GAACACCAACCGCTGCCGCTACTCGAACCCGTACGTCCTCGGCGGCTGGG
TC
back to top