mRNA_M-pyrifera_M_contig68645.16507.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68645.16507.1
Unique NamemRNA_M-pyrifera_M_contig68645.16507.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68645.16507.1 vs. uniprot
Match: D8LND1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.450e-14
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 VLTENKRAEIRARNDEIDRIERDAKKKMVRMEDRDEMLAAAESIPIPARQ 153
            VLTE KRAEI+ARNDEIDR E+ AKKKMVRMED++EMLAAAE+IP+P  Q
Sbjct:  117 VLTEAKRAEIKARNDEIDRREKQAKKKMVRMEDQEEMLAAAEAIPVPVGQ 166
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BLAST of mRNA_M-pyrifera_M_contig68645.16507.1 vs. uniprot
Match: A0A6H5KEV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.090e-13
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 VLTENKRAEIRARNDEIDRIERDAKKKMVRMEDRDEMLAAAESIPIPARQ 153
            VLTE KRAEI+ARNDEIDR E+ AKKKM RMED++EMLAAAE+IP+P  Q
Sbjct:   69 VLTEAKRAEIKARNDEIDRREKQAKKKMARMEDQEEMLAAAEAIPVPVGQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68645.16507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LND1_ECTSI4.450e-1478.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEV5_9PHAE9.090e-1376.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68645contigM-pyrifera_M_contig68645:862..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004300.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.2715726-CDS-M-pyrifera_M_contig68645:861..10141622816578.2715726-CDS-M-pyrifera_M_contig68645:861..1014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68645 862..1014 -
1692278057.5991826-CDS-M-pyrifera_M_contig68645:861..10141692278057.5991826-CDS-M-pyrifera_M_contig68645:861..1014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68645 862..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68645.16507.1prot_M-pyrifera_M_contig68645.16507.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68645 862..1014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68645.16507.1

>prot_M-pyrifera_M_contig68645.16507.1 ID=prot_M-pyrifera_M_contig68645.16507.1|Name=mRNA_M-pyrifera_M_contig68645.16507.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
KVLTENKRAEIRARNDEIDRIERDAKKKMVRMEDRDEMLAAAESIPIPAR
Q
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mRNA from alignment at M-pyrifera_M_contig68645:862..1014-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68645.16507.1 ID=mRNA_M-pyrifera_M_contig68645.16507.1|Name=mRNA_M-pyrifera_M_contig68645.16507.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig68645:862..1014- (Macrocystis pyrifera P11B4 male)
AAGGTGCTCACCGAGAACAAGCGGGCGGAAATCAGAGCTCGGAACGACGA
GATCGACCGTATCGAGAGAGACGCCAAGAAAAAGATGGTGAGAATGGAAG
ACCGGGACGAAATGCTGGCCGCCGCCGAGTCGATCCCCATCCCCGCTCGA
CAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68645:862..1014-

>mRNA_M-pyrifera_M_contig68645.16507.1 ID=mRNA_M-pyrifera_M_contig68645.16507.1|Name=mRNA_M-pyrifera_M_contig68645.16507.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig68645:862..1014- (Macrocystis pyrifera P11B4 male)
AAGGTGCTCACCGAGAACAAGCGGGCGGAAATCAGAGCTCGGAACGACGA
GATCGACCGTATCGAGAGAGACGCCAAGAAAAAGATGGTGAGAATGGAAG
ACCGGGACGAAATGCTGGCCGCCGCCGAGTCGATCCCCATCCCCGCTCGA
CAGAAGGTGCTCACCGAGAACAAGCGGGCGGAAATCAGAGCTCGGAACGA
CGAGATCGACCGTATCGAGAGAGACGCCAAGAAAAAGATGGTGAGAATGG
AAGACCGGGACGAAATGCTGGCCGCCGCCGAGTCGATCCCCATCCCCGCT
CGACAG
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