mRNA_M-pyrifera_M_contig68611.16504.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68611.16504.1
Unique NamemRNA_M-pyrifera_M_contig68611.16504.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A6H5K346_9PHAE (GB1/RHD3-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K346_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.410e-45
Identity = 87/112 (77.68%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 NHRSDDDKSAAWMTADGPSLREGNRN-VGASWGDGEG--EEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            N  S+DD S AWMTADGPSLREGNRN V    G  +G  EE GE S+LRSF WRGGVERMTTGIW+WSEPF+RR EGGK+VAVL+VDTQGMFDNETSMGLTACIFAVSTL+S
Sbjct:   79 NSGSEDDTSEAWMTADGPSLREGNRNSVKPVGGGAQGVQEEEGEGSSLRSFEWRGGVERMTTGIWIWSEPFVRRMEGGKEVAVLVVDTQGMFDNETSMGLTACIFAVSTLLS 190          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A836CGS0_9STRA (Anti-viral guanylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.260e-29
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1
Query:   34 WMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            W+  DG +LREGN N+G     G  ++    S L SF WRGG  RMTTGIW+WSEPF RR  GG+ VAVLLVDTQGMFDNETSMGLTA IF +STL+S
Sbjct:   80 WIKRDGEALREGNANLGVGQVTGGLQDPAGDSPL-SFEWRGGQTRMTTGIWMWSEPFFRRAIGGETVAVLLVDTQGMFDNETSMGLTASIFGLSTLIS 176          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A7S3XHU9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHU9_HETAK)

HSP 1 Score: 111 bits (277), Expect = 5.960e-29
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   13 DDDKSAAWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALR---SFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            D++ S  WM A+G  + EGN N+  +    E  E      L+   SF W+GG ER TTGIW+WSEPF R    G+K A+LLVDTQGMFDNETSMGLTACIF +STL+S
Sbjct:   16 DEETSEEWMKAEGDIMDEGNFNLTQARDAVETVEEFVLPELKPSLSFGWKGGHERQTTGIWMWSEPFFRTVANGEKAAILLVDTQGMFDNETSMGLTACIFGLSTLIS 123          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A4D9DBZ0_9STRA (GB1/RHD3-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBZ0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.030e-26
Identity = 62/103 (60.19%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   19 DKSAAWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            D S  WMTA G  LREGN N     GD      G  +   SF WR G ER TTGIW+WSE F+RR   G++VAVLL+DTQGMFDNETSM LTACIF +STL+S
Sbjct:   89 DDSEDWMTAAGD-LREGNINEKVLAGD-----DGRNALESSFQWRAGKERTTTGIWMWSEAFVRRVANGEEVAVLLMDTQGMFDNETSMNLTACIFGLSTLLS 185          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A7R9YAI8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAI8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.730e-25
Identity = 57/105 (54.29%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   19 DKSAAWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRT--EGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            D S  WM   G  L+EGN N G              +    F WRGG ER TTGIW+WS+PF R++  EGG K+AVLLVDTQGMFDNET+M LT+CIF +STL+S
Sbjct:   74 DTSMDWMQFRGERLQEGNSNSGVD----------SPTVDFGFKWRGGTERQTTGIWMWSKPFFRQSAIEGGAKIAVLLVDTQGMFDNETTMALTSCIFGISTLIS 168          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A7S2D4G1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4G1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.710e-22
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   31 AWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            +W TA+G ++ EGN N  ++        G +      F WRGG ERMTTGIW++S PF +    G+K+AVL+VDTQG+FDNET+M LT+CIF +STL+S
Sbjct:   70 SWQTAEGDNISEGNNNAASTAAKTVESNGAD---CHGFDWRGGHERMTTGIWMYSRPFFQDVFNGEKIAVLIVDTQGLFDNETTMLLTSCIFGLSTLMS 165          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A812SSV5_SYMMI (Atl protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SSV5_SYMMI)

HSP 1 Score: 95.5 bits (236), Expect = 4.050e-22
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    4 HRSDDDKSAAWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRTEG-GKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            H + D+ S +WMT  G ++ EGN +         G E         FAW GG ER TTG+W+WSEPF R+     +++A+LL+DTQGMFDNET+M LTA IF +STL+S
Sbjct:   40 HGNPDNISDSWMTMSGDNMDEGNVS---------GSEADISVKSSGFAWSGGQERQTTGMWMWSEPFFRKVASYPEEIAILLMDTQGMFDNETTMSLTARIFGLSTLIS 139          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: A0A418CCP2_9STRA (GB1/RHD3-type G domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CCP2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.440e-21
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 NHRSDDDKSAAWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            +H + D  S  W  A GP L EGN N  A+     GE G        F+WR G +R TTGIW+WS+PFIR++  G+ +AV L+DTQGMFD+ETS  LTA IF +STL S
Sbjct:   56 SHPAPDVTSREWALACGPQL-EGNSNFEAT----NGETG--------FSWRAGRKRNTTGIWMWSDPFIRQSATGEDIAVFLIDTQGMFDSETSQMLTASIFGLSTLFS 151          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: F0Y0B8_AURAN (GB1/RHD3-type G domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0B8_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-20
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 1
Query:  139 SFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            SF WRGG  RMTTGI VWSEPF+     G+++AV+++DTQG+FDNET MGLT+CIF +STL+S
Sbjct:   40 SFEWRGGRVRMTTGITVWSEPFLVTGADGEQLAVVVLDTQGLFDNETPMGLTSCIFGLSTLMS 102          
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Match: K0TPQ6_THAOC (GB1/RHD3-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPQ6_THAOC)

HSP 1 Score: 94.7 bits (234), Expect = 2.170e-20
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1
Query:  139 SFAWRGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTACIFAVSTLVS 327
            SF WRGG ER TTGIW+WS+P+  + +GG+ VAVLLVDTQGMFD+ET++GLTA IF +STL+S
Sbjct:  559 SFDWRGGKERNTTGIWMWSDPYYLKRDGGEDVAVLLVDTQGMFDHETTVGLTAAIFGLSTLLS 621          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68611.16504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K346_9PHAE2.410e-4577.68GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
A0A836CGS0_9STRA3.260e-2964.29Anti-viral guanylate-binding protein n=1 Tax=Tribo... [more]
A0A7S3XHU9_HETAK5.960e-2955.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9DBZ0_9STRA2.030e-2660.19GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
A0A7R9YAI8_9STRA1.730e-2554.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2D4G1_9STRA1.710e-2250.51Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A812SSV5_SYMMI4.050e-2247.71Atl protein (Fragment) n=1 Tax=Symbiodinium microa... [more]
A0A418CCP2_9STRA9.440e-2150.46GB1/RHD3-type G domain-containing protein (Fragmen... [more]
F0Y0B8_AURAN1.360e-2065.08GB1/RHD3-type G domain-containing protein (Fragmen... [more]
K0TPQ6_THAOC2.170e-2068.25GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68611contigM-pyrifera_M_contig68611:653..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue4e-40
Seed eggNOG ortholog2880.D7FX45
KEGG koko:K17339
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.1423533-CDS-M-pyrifera_M_contig68611:652..9791622816578.1423533-CDS-M-pyrifera_M_contig68611:652..979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68611 653..979 +
1692278057.5398605-CDS-M-pyrifera_M_contig68611:652..9791692278057.5398605-CDS-M-pyrifera_M_contig68611:652..979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68611 653..979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68611.16504.1prot_M-pyrifera_M_contig68611.16504.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68611 653..979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68611.16504.1

>prot_M-pyrifera_M_contig68611.16504.1 ID=prot_M-pyrifera_M_contig68611.16504.1|Name=mRNA_M-pyrifera_M_contig68611.16504.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
NHRSDDDKSAAWMTADGPSLREGNRNVGASWGDGEGEEGGEKSALRSFAW
RGGVERMTTGIWVWSEPFIRRTEGGKKVAVLLVDTQGMFDNETSMGLTAC
IFAVSTLVS
back to top

mRNA from alignment at M-pyrifera_M_contig68611:653..979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68611.16504.1 ID=mRNA_M-pyrifera_M_contig68611.16504.1|Name=mRNA_M-pyrifera_M_contig68611.16504.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig68611:653..979+ (Macrocystis pyrifera P11B4 male)
AACCACAGATCGGACGACGATAAGTCGGCTGCATGGATGACGGCCGACGG ACCCAGTCTGCGAGAGGGCAACCGCAACGTCGGGGCGTCTTGGGGCGATG GAGAAGGGGAGGAGGGAGGGGAGAAGTCCGCGCTGCGCAGCTTCGCGTGG CGCGGAGGGGTGGAGCGCATGACGACCGGGATTTGGGTGTGGTCGGAGCC TTTCATTCGGCGGACGGAGGGCGGCAAGAAGGTGGCGGTGTTGCTGGTGG ACACGCAGGGGATGTTTGACAATGAGACATCCATGGGGCTGACGGCCTGC ATCTTCGCCGTGAGCACTCTGGTGAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68611:653..979+

>mRNA_M-pyrifera_M_contig68611.16504.1 ID=mRNA_M-pyrifera_M_contig68611.16504.1|Name=mRNA_M-pyrifera_M_contig68611.16504.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig68611:653..979+ (Macrocystis pyrifera P11B4 male)
AACCACAGATCGGACGACGATAAGTCGGCTGCATGGATGACGGCCGACGG
ACCCAGTCTGCGAGAGGGCAACCGCAACGTCGGGGCGTCTTGGGGCGATG
GAGAAGGGGAGGAGGGAGGGGAGAAGTCCGCGCTGCGCAGCTTCGCGTGG
CGCGGAGGGGTGGAGCGCATGACGACCGGGATTTGGGTGTGGTCGGAGCC
TTTCATTCGGCGGACGGAGGGCGGCAAGAAGGTGGCGGTGTTGCTGGTGG
ACACGCAGGGGATGTTTGACAATGAGACATCCATGGGGCTGACGGCCTGC
ATCTTCGCCGTGAGCACTCTGGTGAGTAACCACAGATCGGACGACGATAA
GTCGGCTGCATGGATGACGGCCGACGGACCCAGTCTGCGAGAGGGCAACC
GCAACGTCGGGGCGTCTTGGGGCGATGGAGAAGGGGAGGAGGGAGGGGAG
AAGTCCGCGCTGCGCAGCTTCGCGTGGCGCGGAGGGGTGGAGCGCATGAC
GACCGGGATTTGGGTGTGGTCGGAGCCTTTCATTCGGCGGACGGAGGGCG
GCAAGAAGGTGGCGGTGTTGCTGGTGGACACGCAGGGGATGTTTGACAAT
GAGACATCCATGGGGCTGACGGCCTGCATCTTCGCCGTGAGCACTCTGGT
GAGT
back to top