mRNA_M-pyrifera_M_contig68587.16502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68587.16502.1
Unique NamemRNA_M-pyrifera_M_contig68587.16502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68587.16502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68587contigM-pyrifera_M_contig68587:126..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size681
Cds size681
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.0548506-CDS-M-pyrifera_M_contig68587:125..8061622816578.0548506-CDS-M-pyrifera_M_contig68587:125..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68587 126..806 +
1692278057.5083442-CDS-M-pyrifera_M_contig68587:125..8061692278057.5083442-CDS-M-pyrifera_M_contig68587:125..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68587 126..806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68587.16502.1prot_M-pyrifera_M_contig68587.16502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68587 126..806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68587.16502.1

>prot_M-pyrifera_M_contig68587.16502.1 ID=prot_M-pyrifera_M_contig68587.16502.1|Name=mRNA_M-pyrifera_M_contig68587.16502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=227bp
MAYVKAGPAFNLDNTFFNSSDTGWSIAGGVRQPLAGRGPAGFVFIDLGGS
FLTVSGDADARAVPGTFVVNDGFGVVSSTPLADLLEADLVEINRASADAA
IGWQRTPEGPGGGLGMMFRMGGRWGHIHGDFHEVTSATTNALIAGLAPGE
TATLLEDYSNTDITAGLFTGAGFTFINSDICSAAFGPLGLAIGTEVEVAH
DWIDFGNYQDSGFWTGTLLFSFELYR*
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mRNA from alignment at M-pyrifera_M_contig68587:126..806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68587.16502.1 ID=mRNA_M-pyrifera_M_contig68587.16502.1|Name=mRNA_M-pyrifera_M_contig68587.16502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=681bp|location=Sequence derived from alignment at M-pyrifera_M_contig68587:126..806+ (Macrocystis pyrifera P11B4 male)
ATGGCGTACGTAAAGGCCGGCCCTGCATTCAATCTCGATAACACATTCTT
CAACAGTTCGGATACGGGCTGGTCAATCGCGGGTGGCGTTAGACAACCAC
TCGCCGGTCGAGGTCCCGCCGGATTTGTCTTCATCGATTTAGGTGGCTCA
TTCTTAACCGTGTCCGGCGACGCCGATGCTCGGGCAGTGCCGGGTACATT
CGTCGTGAACGATGGTTTCGGAGTGGTGTCATCCACGCCCTTGGCCGACC
TACTGGAGGCCGATCTGGTCGAAATCAATCGAGCCAGCGCCGATGCAGCC
ATTGGTTGGCAACGCACCCCCGAAGGTCCCGGTGGTGGACTCGGCATGAT
GTTCCGCATGGGCGGTCGTTGGGGGCACATTCATGGTGACTTCCACGAAG
TTACTTCTGCAACGACCAATGCACTCATCGCAGGGTTGGCTCCGGGCGAA
ACAGCCACGCTACTGGAAGACTACTCCAACACCGACATCACTGCCGGGCT
TTTTACCGGAGCAGGGTTCACATTCATCAACAGCGATATTTGCTCCGCGG
CGTTTGGCCCATTGGGGCTCGCCATCGGCACTGAAGTTGAAGTGGCCCAC
GACTGGATTGACTTTGGCAACTATCAAGACAGCGGCTTCTGGACTGGCAC
ACTCCTGTTTAGCTTTGAACTCTATCGCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68587:126..806+

>mRNA_M-pyrifera_M_contig68587.16502.1 ID=mRNA_M-pyrifera_M_contig68587.16502.1|Name=mRNA_M-pyrifera_M_contig68587.16502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1362bp|location=Sequence derived from alignment at M-pyrifera_M_contig68587:126..806+ (Macrocystis pyrifera P11B4 male)
ATGGCGTACGTAAAGGCCGGCCCTGCATTCAATCTCGATAACACATTCTT
CAACAGTTCGGATACGGGCTGGTCAATCGCGGGTGGCGTTAGACAACCAC
TCGCCGGTCGAGGTCCCGCCGGATTTGTCTTCATCGATTTAGGTGGCTCA
TTCTTAACCGTGTCCGGCGACGCCGATGCTCGGGCAGTGCCGGGTACATT
CGTCGTGAACGATGGTTTCGGAGTGGTGTCATCCACGCCCTTGGCCGACC
TACTGGAGGCCGATCTGGTCGAAATCAATCGAGCCAGCGCCGATGCAGCC
ATTGGTTGGCAACGCACCCCCGAAGGTCCCGGTGGTGGACTCGGCATGAT
GTTCCGCATGGGCGGTCGTTGGGGGCACATTCATGGTGACTTCCACGAAG
TTACTTCTGCAACGACCAATGCACTCATCGCAGGGTTGGCTCCGGGCGAA
ACAGCCACGCTACTGGAAGACTACTCCAACACCGACATCACTGCCGGGCT
TTTTACCGGAGCAGGGTTCACATTCATCAACAGCGATATTTGCTCCGCGG
CGTTTGGCCCATTGGGGCTCGCCATCGGCACTGAAGTTGAAGTGGCCCAC
GACTGGATTGACTTTGGCAACTATCAAGACAGCGGCTTCTGGACTGGCAC
ACTCCTGTTTAGCTTTGAACTCTATCGCTAAATGGCGTACGTAAAGGCCG
GCCCTGCATTCAATCTCGATAACACATTCTTCAACAGTTCGGATACGGGC
TGGTCAATCGCGGGTGGCGTTAGACAACCACTCGCCGGTCGAGGTCCCGC
CGGATTTGTCTTCATCGATTTAGGTGGCTCATTCTTAACCGTGTCCGGCG
ACGCCGATGCTCGGGCAGTGCCGGGTACATTCGTCGTGAACGATGGTTTC
GGAGTGGTGTCATCCACGCCCTTGGCCGACCTACTGGAGGCCGATCTGGT
CGAAATCAATCGAGCCAGCGCCGATGCAGCCATTGGTTGGCAACGCACCC
CCGAAGGTCCCGGTGGTGGACTCGGCATGATGTTCCGCATGGGCGGTCGT
TGGGGGCACATTCATGGTGACTTCCACGAAGTTACTTCTGCAACGACCAA
TGCACTCATCGCAGGGTTGGCTCCGGGCGAAACAGCCACGCTACTGGAAG
ACTACTCCAACACCGACATCACTGCCGGGCTTTTTACCGGAGCAGGGTTC
ACATTCATCAACAGCGATATTTGCTCCGCGGCGTTTGGCCCATTGGGGCT
CGCCATCGGCACTGAAGTTGAAGTGGCCCACGACTGGATTGACTTTGGCA
ACTATCAAGACAGCGGCTTCTGGACTGGCACACTCCTGTTTAGCTTTGAA
CTCTATCGCTAA
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