mRNA_M-pyrifera_M_contig6857.16493.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6857.16493.1
Unique NamemRNA_M-pyrifera_M_contig6857.16493.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: D7FNX4_ECTSI (Putative anion:sodium symporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX4_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 2.240e-51
Identity = 89/99 (89.90%), Postives = 96/99 (96.97%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVKT 298
            QVAPTIISAG+ALQIPI+LLH +GGL+GY LP+ MGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGS+EARVPAAISVVWMAITGSMMAIIWRYIPV+T
Sbjct:  273 QVAPTIISAGLALQIPIILLHLLGGLIGYFLPKAMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAISVVWMAITGSMMAIIWRYIPVET 371
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A836CI93_9STRA (Putative anion:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI93_9STRA)

HSP 1 Score: 172 bits (436), Expect = 4.920e-51
Identity = 85/98 (86.73%), Postives = 95/98 (96.94%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QVAPTIISAGIALQIPI+LLH +GGL+GY +PR +GFSEVSSRTMAIETSMKSSAFGFLLAKLHFGS+EARVPAA+SVVWMAITGS++AI+WRYIPVK
Sbjct:  214 QVAPTIISAGIALQIPIILLHLVGGLLGYLVPRKLGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSFEARVPAAVSVVWMAITGSLLAIVWRYIPVK 311
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A7S2SE37_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SE37_9STRA)

HSP 1 Score: 152 bits (385), Expect = 9.360e-46
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QVA  I++AGI LQIP++LLH +GGL+GY LP+  GF EV SRTMAIETSMKSSAFGFLLAKLHFG Y ARVP+A+SVVWMA+TGSM+A++WRYIPVK
Sbjct:   40 QVADPIMNAGIGLQIPVLLLHLLGGLVGYWLPKITGFGEVKSRTMAIETSMKSSAFGFLLAKLHFGDYVARVPSAVSVVWMALTGSMLAVVWRYIPVK 137
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A7S1D1B0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1B0_CYCTE)

HSP 1 Score: 155 bits (393), Expect = 4.190e-45
Identity = 75/98 (76.53%), Postives = 89/98 (90.82%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QVA  I+ AG++LQIP++LLH +GGL+GY LPR  GF+EVSSRTMAIETSMKSSAFGFLLAKLHFG Y ARVP+A+SVVWMA+TGS++A+IWRYIPVK
Sbjct:  189 QVAAPILDAGVSLQIPVLLLHLVGGLVGYFLPRLTGFNEVSSRTMAIETSMKSSAFGFLLAKLHFGEYAARVPSAVSVVWMALTGSILAVIWRYIPVK 286
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A7S2RGT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGT9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.420e-44
Identity = 73/98 (74.49%), Postives = 88/98 (89.80%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QVA  I+SAG++LQ+P +LLH IGGL+GYALP+  GF EV+ RTMAIETSMKSSAFGFLLAKLHFG Y ARVPAA+SVVWMA+TGS++A+IWRY+PV+
Sbjct:   92 QVADPIMSAGLSLQLPCLLLHLIGGLVGYALPKMSGFGEVACRTMAIETSMKSSAFGFLLAKLHFGEYAARVPAAVSVVWMALTGSILAVIWRYVPVE 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A8J9XAR6_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9XAR6_PHATR)

HSP 1 Score: 149 bits (377), Expect = 1.920e-44
Identity = 71/99 (71.72%), Postives = 87/99 (87.88%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVKT 298
            QVA  I++AG+ LQIPI+L+H +GGL+GY LPR  GF E S+RTMAIETSMKSSAFGFLLAKLHFG Y ARVP+A+SVVWMA+ GS++A++WRYIPV+T
Sbjct:   45 QVAEPILNAGLRLQIPIMLIHLLGGLVGYILPRLTGFGETSARTMAIETSMKSSAFGFLLAKLHFGDYAARVPSAVSVVWMALIGSLLAVVWRYIPVET 143
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A1E7FNI1_9STRA (BASS family transporter: sodium ion/bile acid n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNI1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.080e-43
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QV   I++AG+ LQ PI LLH IGGL+GY LP+  GF EV SRTMAIETSMKSSAFGFLLAKLHFG Y ARVP+A+SVVWMA+TGSM+A+IWRYIPVK
Sbjct:  166 QVTEPILNAGLQLQAPIFLLHLIGGLVGYGLPKLTGFGEVKSRTMAIETSMKSSAFGFLLAKLHFGQYAARVPSAVSVVWMALTGSMLAVIWRYIPVK 263
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BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A6U2HAE6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2HAE6_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.570e-43
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QVA  I++AG+ LQIP++LLH +GGL+GYALPR  GF E +SRTMAIETSMKSSAFGFLLAKLHFG Y ARVP+A+SVVWMA+TGS +A+IWRYIPVK
Sbjct:  249 QVAEPILAAGLGLQIPVLLLHLVGGLIGYALPRNTGFGETASRTMAIETSMKSSAFGFLLAKLHFGEYAARVPSAVSVVWMALTGSTLAVIWRYIPVK 346
[Close]
BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A7S1USI2_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USI2_9STRA)

HSP 1 Score: 152 bits (385), Expect = 7.700e-43
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVK 295
            QVA  I+ AGI LQIPI+LLH +GGL+GY LPR  GF EVSSRTMAIETSMKSSAFGFLLAKLHFG+Y ARVP+A+S+VWMA+TGS++A+IWRYIPV 
Sbjct:  296 QVAQPILDAGIFLQIPILLLHLVGGLVGYFLPRSTGFGEVSSRTMAIETSMKSSAFGFLLAKLHFGTYAARVPSAVSIVWMALTGSILAVIWRYIPVS 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Match: A0A7S2U7V0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7V0_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.860e-42
Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = 2 
Query:    2 QVAPTIISAGIALQIPIVLLHFIGGLMGYALPRYMGFSEVSSRTMAIETSMKSSAFGFLLAKLHFGSYEARVPAAISVVWMAITGSMMAIIWRYIPVKT 298
            QVA  I++AG++LQ+P +LLH IGGL+GY LPR  GF EV+SRTMAIETSMKSSAFGFLLAKLHFG Y ARVPAA+SVVWMA+TGS++A+IWR+IPV T
Sbjct:  320 QVAEPILNAGLSLQLPCLLLHLIGGLVGYILPRMSGFGEVASRTMAIETSMKSSAFGFLLAKLHFGDYAARVPAAVSVVWMALTGSILAVIWRFIPVNT 418
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6857.16493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNX4_ECTSI2.240e-5189.90Putative anion:sodium symporter n=2 Tax=Ectocarpus... [more]
A0A836CI93_9STRA4.920e-5186.73Putative anion:sodium symporter n=1 Tax=Tribonema ... [more]
A0A7S2SE37_9STRA9.360e-4675.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1D1B0_CYCTE4.190e-4576.53Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2RGT9_9STRA1.420e-4474.49Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A8J9XAR6_PHATR1.920e-4471.72Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A1E7FNI1_9STRA2.080e-4375.51BASS family transporter: sodium ion/bile acid n=1 ... [more]
A0A6U2HAE6_9STRA2.570e-4375.51Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1USI2_9STRA7.700e-4376.53Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S2U7V0_9STRA2.860e-4274.75Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6857contigM-pyrifera_M_contig6857:7106..9180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.5988367-CDS-M-pyrifera_M_contig6857:7105..73141622816577.5988367-CDS-M-pyrifera_M_contig6857:7105..7314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6857 7106..7314 -
1692278057.2825832-CDS-M-pyrifera_M_contig6857:7105..73141692278057.2825832-CDS-M-pyrifera_M_contig6857:7105..7314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6857 7106..7314 -
1622816577.6173499-CDS-M-pyrifera_M_contig6857:9089..91801622816577.6173499-CDS-M-pyrifera_M_contig6857:9089..9180Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6857 9090..9180 -
1692278057.2916121-CDS-M-pyrifera_M_contig6857:9089..91801692278057.2916121-CDS-M-pyrifera_M_contig6857:9089..9180Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6857 9090..9180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6857.16493.1prot_M-pyrifera_M_contig6857.16493.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6857 7106..9180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6857.16493.1

>prot_M-pyrifera_M_contig6857.16493.1 ID=prot_M-pyrifera_M_contig6857.16493.1|Name=mRNA_M-pyrifera_M_contig6857.16493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
AGGPNDHLSRNCPADSDRASPLHRRAHGIRAPQVHGLLRSVVADDGHRNF
HEVLCLRLPPGQAAFRFLRGSRTSSDISGVDGHHRLHDGDHLEVHPRQDP
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mRNA from alignment at M-pyrifera_M_contig6857:7106..9180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6857.16493.1 ID=mRNA_M-pyrifera_M_contig6857.16493.1|Name=mRNA_M-pyrifera_M_contig6857.16493.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2075bp|location=Sequence derived from alignment at M-pyrifera_M_contig6857:7106..9180- (Macrocystis pyrifera P11B4 male)
GCAGGTGGCCCCAACGATCATCTCAGCCGGAATTGCCCTGCAGATTCCGA
TCGTGCTTCTCCACTTCATCGGCGGGCTCATGGGATACGCGGTGAGTGGG
ACCGGGTGGACGTATCACGGCAACGGTTGGGATTCTACTAGGATTCTGCC
TATAAAGCGTTTACGCAGCCCCCTGTGTGTTCAAGATATTGATATTCCCC
AGGTATAGTCCGAAATGGCATCACTTCTACGTACGTGCGCGTTATGTATT
ACATGGACAGTCGTCTTCAAATGCTTCTTTACCCGTACTTCCAAGCAGAC
ATGTAATAAGACGAAGCATAGTTTTTTTCAAGGAGTGAGTATCTATATTG
TTTTTTTTTTCCAGGGGACGATATCTTAATATGCGCATATATACCGAATA
CAGTTGTAACACCCAGCAACCAACCAGTAGTTGACGTGTGCAGGCACAAA
ACTCGAAAAGGGCCGCGTACGCGTGTATGGCTTATTTTGAGCGAATGCGA
ACGAACCACCAACGCAGTTGCATTGCTGTGACCGCTGTGCTCGCAACCGT
TGAGACCTCTACTAACAGCCACCAACATCGACTGCCATGTTCGCTACTTT
TAGTGCTGCAGTGCGCAGAAACCTAAATCTGGCTTTGATTTCAAGTGTTT
TCTCCTCGCAATGGGACTGCAGTCGTAAAGAGGGTTGTACGGCCTCCGGT
AGTTTTTGCGAGCAGAGTTAACAGTAATCCACCAGATATTCCACATAATG
GTTGATACAACCTGTGTACGAGACAAAGGGCACAATGCTATAACCAATGG
TCGACCATGCTATATATAAAACCAGCGGTAGGTTGGGTATGGTTGGGTCT
GCGTCACAGGGTTAGTTGTTGATATCGCACACGAAAGTGACCCCTCAACC
GTGCATCATGTGGAACAAGTGGTGATGAGACTCCCCCCTCAGTTTTTATC
GCCTTTTCTGTATTGATTGCCCTTTTCACCCCTTCAGGGCTCTTCTCCCG
TGGTGGAGACAAAAACACTTGGAATTAGAGTATACTGGTAATATAGTAGC
TTTCTGTACACTGCGGTACTAAAAAGTTGTAACTGGAATCGACTATTACG
GAAGACCATAGTAAATAGTACCCACGTTACGCACAAAAAACTGTGAATTT
CCCTTTTTTTTCTGACATAATGTGGTCCCATTTCCTACTGTATGGTCCCC
CGCAATACGCACGTATCCCGTTTGCGACTCCAGAGAGAAAAATACTGACG
AAAATGATTGACGGTTTTGCAGCATCGGCCGTACGAATCAACGCGGGCCG
CAGGGTTAGCAGATGGCGGTTTTAGTGTCCCGAAGGCAATGTAAGGGAGC
TAGCTACTGTGGCCGTACGCACAACGCATGCAGCACGGGTGATATTTTTT
TTTCGCTTTTTTGTCATTTGTAGGCCGCTGTTGGTGTTTCTACTCGTACG
TGCTGCAGTCGCACAATTACTGTAGACTGTCGATTCTGTCAGGCTTGAGT
TCGTTTTTGGTAGCTATAACCGGCCTGCGAACGCTCTGCTCTTTATTCAC
CCCATGGAACATAAATTCGATCTGCGGAAACACCTTCGTGGGAGTGCAGA
AGGCTGAATACATCACTTCGCTTCATCAGAGCAACAGAGCAGCAGAGGAT
GCGCTATATACCTGCGTGTGACTGTGTGATTTGTCTTCCGTAGTCCACGG
CGTTGCCAGATGTGTTTTTTTTAAATAGTCTGGATCTGACCCCTAAGACC
CAACGATGATCTCACTTATCCCCGTACTTTTATTGTGTTTCATGCAAACG
CCTCTTTTTCTGCGTGTGTTTGTGTTTTCTTTCGCCCGCCGGGTGGGCAC
GCAACAACCCCTACAGCTCCCCAGGTACATGGGCTTCTCCGAAGTGTCGT
CGCGGACGATGGCCATCGAAACTTCCATGAAGTCCTCTGCCTTCGGCTTC
CTCCTGGCCAAGCTGCATTTCGGTTCCTACGAGGCTCGCGTACCAGCAGC
GATATCAGTGGTGTGGATGGCCATCACCGGCTCCATGATGGCGATCATCT
GGAGGTACATCCCCGTCAAGACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6857:7106..9180-

>mRNA_M-pyrifera_M_contig6857.16493.1 ID=mRNA_M-pyrifera_M_contig6857.16493.1|Name=mRNA_M-pyrifera_M_contig6857.16493.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig6857:7106..9180- (Macrocystis pyrifera P11B4 male)
GCAGGTGGCCCCAACGATCATCTCAGCCGGAATTGCCCTGCAGATTCCGA
TCGTGCTTCTCCACTTCATCGGCGGGCTCATGGGATACGCGGCAGGTGGC
CCCAACGATCATCTCAGCCGGAATTGCCCTGCAGATTCCGATCGTGCTTC
TCCACTTCATCGGCGGGCTCATGGGATACGCGCTCCCCAGGTACATGGGC
TTCTCCGAAGTGTCGTCGCGGACGATGGCCATCGAAACTTCCATGAAGTC
CTCTGCCTTCGGCTTCCTCCTGGCCAAGCTGCATTTCGGTTCCTACGAGG
CTCGCGTACCAGCAGCGATATCAGTGGTGTGGATGGCCATCACCGGCTCC
ATGATGGCGATCATCTGGAGGTACATCCCCGTCAAGACCCCCTCCCCAGG
TACATGGGCTTCTCCGAAGTGTCGTCGCGGACGATGGCCATCGAAACTTC
CATGAAGTCCTCTGCCTTCGGCTTCCTCCTGGCCAAGCTGCATTTCGGTT
CCTACGAGGCTCGCGTACCAGCAGCGATATCAGTGGTGTGGATGGCCATC
ACCGGCTCCATGATGGCGATCATCTGGAGGTACATCCCCGTCAAGACCCC
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