mRNA_M-pyrifera_M_contig68566.16491.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68566.16491.1
Unique NamemRNA_M-pyrifera_M_contig68566.16491.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68566.16491.1 vs. uniprot
Match: A0A6H5K884_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K884_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.730e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   31 DSATVVFTVLHQAPTRAVCLGQALVRPMTFPRVGQHARTVALSKQQV 171
            D AT++FTVLHQAPTRAVCLGQ  V P  F +  +H  TVAL+K+QV
Sbjct:  123 DEATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQV 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68566.16491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K884_9PHAE3.730e-1163.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68566contigM-pyrifera_M_contig68566:193..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_001680.1
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.560088-CDS-M-pyrifera_M_contig68566:192..3661622816577.560088-CDS-M-pyrifera_M_contig68566:192..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68566 193..366 +
1692278057.2732828-CDS-M-pyrifera_M_contig68566:192..3661692278057.2732828-CDS-M-pyrifera_M_contig68566:192..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68566 193..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68566.16491.1prot_M-pyrifera_M_contig68566.16491.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68566 193..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68566.16491.1

>prot_M-pyrifera_M_contig68566.16491.1 ID=prot_M-pyrifera_M_contig68566.16491.1|Name=mRNA_M-pyrifera_M_contig68566.16491.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
EQEFFLPGVSDSATVVFTVLHQAPTRAVCLGQALVRPMTFPRVGQHARTV
ALSKQQV*
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mRNA from alignment at M-pyrifera_M_contig68566:193..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68566.16491.1 ID=mRNA_M-pyrifera_M_contig68566.16491.1|Name=mRNA_M-pyrifera_M_contig68566.16491.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig68566:193..366+ (Macrocystis pyrifera P11B4 male)
GAACAAGAGTTTTTCTTGCCGGGGGTGTCCGATTCGGCCACGGTCGTCTT
CACCGTGCTCCATCAGGCGCCCACGAGGGCGGTGTGCCTGGGACAGGCCC
TCGTTCGGCCCATGACGTTTCCGCGAGTCGGGCAGCACGCGCGGACGGTT
GCTCTTTCCAAGCAACAGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68566:193..366+

>mRNA_M-pyrifera_M_contig68566.16491.1 ID=mRNA_M-pyrifera_M_contig68566.16491.1|Name=mRNA_M-pyrifera_M_contig68566.16491.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig68566:193..366+ (Macrocystis pyrifera P11B4 male)
GAACAAGAGTTTTTCTTGCCGGGGGTGTCCGATTCGGCCACGGTCGTCTT
CACCGTGCTCCATCAGGCGCCCACGAGGGCGGTGTGCCTGGGACAGGCCC
TCGTTCGGCCCATGACGTTTCCGCGAGTCGGGCAGCACGCGCGGACGGTT
GCTCTTTCCAAGCAACAGGTGTGAGAACAAGAGTTTTTCTTGCCGGGGGT
GTCCGATTCGGCCACGGTCGTCTTCACCGTGCTCCATCAGGCGCCCACGA
GGGCGGTGTGCCTGGGACAGGCCCTCGTTCGGCCCATGACGTTTCCGCGA
GTCGGGCAGCACGCGCGGACGGTTGCTCTTTCCAAGCAACAGGTGTGA
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