mRNA_M-pyrifera_M_contig68463.16475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68463.16475.1
Unique NamemRNA_M-pyrifera_M_contig68463.16475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68463.16475.1 vs. uniprot
Match: A0A7C2B3I8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2B3I8_9BACT)

HSP 1 Score: 108 bits (271), Expect = 8.080e-26
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:   52 GWSFEDVDVWLEGSLEEFDWRVNVDLDSGSAALEDAWVRWACGENVGITWGQFRQRIARSANIDPENQFFIDRSLIGMRFDMFDNGIQVDGMHSGFTWALAAQNGADGTGDSLM 393
            G+   D+DV   G    F +RV  DLDSGSA+LEDA+ +WACGE+  +  G F+  + RS  IDPE Q FIDR+++G  +D++D G QV G      W+++AQNG  G   S +
Sbjct:   75 GFDLNDIDVAFWGGSGGFTYRVGFDLDSGSASLEDAYAQWACGESASVRIGNFKPHVLRSGWIDPEGQLFIDRTVLGSTYDLWDAGAQVFGQTDNLGWSVSAQNGTTGVHSSHL 188
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BLAST of mRNA_M-pyrifera_M_contig68463.16475.1 vs. uniprot
Match: A0A2D5AS02_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AS02_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 2.120e-20
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 1 
Query:    1 DVGALIRN--SYRDGGSE---GGWSFEDVDVWLEGSLEEFDWRVNVDLDSGSAALEDAWVRWACGENVGITWGQFRQRIARSANIDPENQFFIDRSLIGMRFDMFDNGIQVDGMHSGFTWALAAQNGADGTGDSLM 393
            + GALIR   +Y DG       G+ F DVD+W E  L+ F++RVN D  +G+  LEDA+ RW   E++ +++G F+     SA +DP++    DR+++G  FD +D G+   G      + ++  NGA+G  D+ +
Sbjct:   52 EAGALIRAFWAYADGDLAQDFNGFGFNDVDIWAEMDLDNFEFRVNFDASTGTTILEDAYARWLKSESLEVSFGNFKPNTLFSATVDPDHLVLNDRTILGTLFDRWDLGVGAAGNIEKLGYFVSVTNGANGPADNTL 187
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BLAST of mRNA_M-pyrifera_M_contig68463.16475.1 vs. uniprot
Match: A0A2D5AYD1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AYD1_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 3.890e-18
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   64 EDVDVWLEGSLEEFDWRVNVDLDSGSAALEDAWVRWACGENVGITWGQFRQRIARSANIDPENQFFIDRSLIGMRFDMFDNGIQVDGMHSGFTWALAAQNGADG 375
            EDV  + E +  +   RV ++L SG+A LED WV W   E VG   GQF+ R+  SA+ DPE   F DR+L+G RFD +D G ++ G      W LA  +G DG
Sbjct:   65 EDVQPYFELAYSDALVRVQLELASGTAVLEDGWVGWNPPELVGFKTGQFKPRVLHSASADPETLVFRDRTLLGERFDYYDRGAELSGGGDAIRWFLAVTDGQDG 168
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BLAST of mRNA_M-pyrifera_M_contig68463.16475.1 vs. uniprot
Match: A0A7Y5PXN7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PXN7_9PLAN)

HSP 1 Score: 70.9 bits (172), Expect = 8.090e-12
Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 1 
Query:    4 VGALIRNSYRD------GGSE-GGWSFEDVDVWLEGSLEEFDWRVNVDLDS-----------GSAALEDAWVRWACGENVGITWGQFRQRIARSANIDPENQFFIDRSLIGMRFDMFDNGIQVDGMHSGFTWALAAQNGADGTGDSL 390
            V   +R SY        GG + GG+S +D  +W+ GS+ +F   V  +  S           G  ++ DA+  W   E + +  GQFR     S+  +  N  FI RS +G  +   D G+Q++G      +A+ AQNG+DG    +
Sbjct:   48 VSGFLRASYNSSSDISVGGDDLGGFSIDDAQIWVNGSVGDFSVVVQAEASSSMNTPESLSAAGGLSVLDAYASWKATEQLKVQLGQFRPAFLGSSLRNENNLLFIGRSYLGAEYAFRDQGVQLNGAFGMLNFAVFAQNGSDGAAKEM 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68463.16475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7C2B3I8_9BACT8.080e-2644.74Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5AS02_9BACT2.120e-2035.29Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5AYD1_9BACT3.890e-1843.27Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5PXN7_9PLAN8.090e-1229.25Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68463contigM-pyrifera_M_contig68463:840..1232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.6239154-CDS-M-pyrifera_M_contig68463:839..12321622816576.6239154-CDS-M-pyrifera_M_contig68463:839..1232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68463 840..1232 +
1692278056.6898105-CDS-M-pyrifera_M_contig68463:839..12321692278056.6898105-CDS-M-pyrifera_M_contig68463:839..1232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68463 840..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68463.16475.1prot_M-pyrifera_M_contig68463.16475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68463 840..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68463.16475.1

>prot_M-pyrifera_M_contig68463.16475.1 ID=prot_M-pyrifera_M_contig68463.16475.1|Name=mRNA_M-pyrifera_M_contig68463.16475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
DVGALIRNSYRDGGSEGGWSFEDVDVWLEGSLEEFDWRVNVDLDSGSAAL
EDAWVRWACGENVGITWGQFRQRIARSANIDPENQFFIDRSLIGMRFDMF
DNGIQVDGMHSGFTWALAAQNGADGTGDSLM
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mRNA from alignment at M-pyrifera_M_contig68463:840..1232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68463.16475.1 ID=mRNA_M-pyrifera_M_contig68463.16475.1|Name=mRNA_M-pyrifera_M_contig68463.16475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig68463:840..1232+ (Macrocystis pyrifera P11B4 male)
GACGTCGGCGCCCTCATCCGCAACAGCTACCGCGACGGCGGCTCGGAGGG
CGGTTGGTCCTTCGAAGACGTCGACGTCTGGCTCGAAGGCTCCCTCGAGG
AGTTCGACTGGCGTGTCAACGTCGACCTCGACAGCGGCTCGGCCGCTCTC
GAGGACGCCTGGGTCCGTTGGGCCTGCGGCGAGAACGTCGGCATCACCTG
GGGCCAGTTCCGCCAGCGCATCGCGCGCAGCGCGAACATCGACCCGGAGA
ACCAGTTCTTCATCGATCGCAGCCTCATCGGCATGCGCTTCGACATGTTC
GACAACGGCATCCAGGTCGACGGCATGCACTCGGGCTTCACCTGGGCGCT
TGCCGCCCAGAACGGCGCCGACGGCACCGGTGACAGCCTCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68463:840..1232+

>mRNA_M-pyrifera_M_contig68463.16475.1 ID=mRNA_M-pyrifera_M_contig68463.16475.1|Name=mRNA_M-pyrifera_M_contig68463.16475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig68463:840..1232+ (Macrocystis pyrifera P11B4 male)
GACGTCGGCGCCCTCATCCGCAACAGCTACCGCGACGGCGGCTCGGAGGG
CGGTTGGTCCTTCGAAGACGTCGACGTCTGGCTCGAAGGCTCCCTCGAGG
AGTTCGACTGGCGTGTCAACGTCGACCTCGACAGCGGCTCGGCCGCTCTC
GAGGACGCCTGGGTCCGTTGGGCCTGCGGCGAGAACGTCGGCATCACCTG
GGGCCAGTTCCGCCAGCGCATCGCGCGCAGCGCGAACATCGACCCGGAGA
ACCAGTTCTTCATCGATCGCAGCCTCATCGGCATGCGCTTCGACATGTTC
GACAACGGCATCCAGGTCGACGGCATGCACTCGGGCTTCACCTGGGCGCT
TGCCGCCCAGAACGGCGCCGACGGCACCGGTGACAGCCTCATGGACGTCG
GCGCCCTCATCCGCAACAGCTACCGCGACGGCGGCTCGGAGGGCGGTTGG
TCCTTCGAAGACGTCGACGTCTGGCTCGAAGGCTCCCTCGAGGAGTTCGA
CTGGCGTGTCAACGTCGACCTCGACAGCGGCTCGGCCGCTCTCGAGGACG
CCTGGGTCCGTTGGGCCTGCGGCGAGAACGTCGGCATCACCTGGGGCCAG
TTCCGCCAGCGCATCGCGCGCAGCGCGAACATCGACCCGGAGAACCAGTT
CTTCATCGATCGCAGCCTCATCGGCATGCGCTTCGACATGTTCGACAACG
GCATCCAGGTCGACGGCATGCACTCGGGCTTCACCTGGGCGCTTGCCGCC
CAGAACGGCGCCGACGGCACCGGTGACAGCCTCATG
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