mRNA_M-pyrifera_M_contig68393.16459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68393.16459.1
Unique NamemRNA_M-pyrifera_M_contig68393.16459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68393.16459.1 vs. uniprot
Match: A0A7Y2BK38_9DELT (Glutathione S-transferase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BK38_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 2.180e-8
Identity = 75/248 (30.24%), Postives = 105/248 (42.34%), Query Frame = 1 
Query:    1 ARALLHRCGIPYVESRHIPFVHMLAVKWAASGAKPGVLRGDRASSPYSTPLLIAEDGEVVSGTREIFEWARRRVVGGGGCGKELEAFLELDETWAKELHDRLGVNARVLGYHWLLQGGAGSFSQSVTGSVPAWQQTLLRWLYPLFGMAIHGFMRV----HDPRRVAKAEKVVDDIFERASAALERAGSISGAAAPNATDLYFAALSYPVLGL--QSTSGAPLPA-ALVPHAPPDHLHRLRSSNAGKLA 723
            AR  L R  +PY E  H+PFV  +AV  A  G        DR SS YSTP+LI  DG +++ + +I  +A             L    E+ E       D+LG   R+L Y W L    G   Q    +V   +    + + P  G  +   + +    HD R + +  + +DD   R    LE    + G     A DL FAAL  P L L  +   GA LPA A +       +  +RS  AG+ A
Sbjct:   28 ARWALDRYTVPYREEPHMPFVCSIAVAVATRGRGGSA---DRTSSRYSTPVLILNDGRILTDSTDIVHFA-------AAGDDSLFPNAEVSEL-VDHYGDQLGPYTRLLAY-WHLGSHPGMIEQLAADNVGRREAWAFKRIVPFVGSQLTRALNLTESGHD-RALTRLRQELDDTASR----LEHRNYLCGDRF-TAADLTFAALLAPALCLTPEEGFGAILPARASLDEEAQSLIREVRSHPAGQFA 257
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68393.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y2BK38_9DELT2.180e-830.24Glutathione S-transferase n=1 Tax=Myxococcales bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68393contigM-pyrifera_M_contig68393:225..977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog1380390.JIAT01000010_gene3558
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutathione S-transferase, N-terminal domain
EggNOG OGs2HQC6@201174,4CRWK@84995,COG0625@1,COG0625@2
EC2.5.1.18
COG Functional cat.O
Best tax levelRubrobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.3921304-CDS-M-pyrifera_M_contig68393:224..9771622816575.3921304-CDS-M-pyrifera_M_contig68393:224..977Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68393 225..977 -
1692278055.866625-CDS-M-pyrifera_M_contig68393:224..9771692278055.866625-CDS-M-pyrifera_M_contig68393:224..977Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68393 225..977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68393.16459.1prot_M-pyrifera_M_contig68393.16459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68393 225..977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68393.16459.1

>prot_M-pyrifera_M_contig68393.16459.1 ID=prot_M-pyrifera_M_contig68393.16459.1|Name=mRNA_M-pyrifera_M_contig68393.16459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=251bp
ARALLHRCGIPYVESRHIPFVHMLAVKWAASGAKPGVLRGDRASSPYSTP
LLIAEDGEVVSGTREIFEWARRRVVGGGGCGKELEAFLELDETWAKELHD
RLGVNARVLGYHWLLQGGAGSFSQSVTGSVPAWQQTLLRWLYPLFGMAIH
GFMRVHDPRRVAKAEKVVDDIFERASAALERAGSISGAAAPNATDLYFAA
LSYPVLGLQSTSGAPLPAALVPHAPPDHLHRLRSSNAGKLASALLRNLAP
A
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mRNA from alignment at M-pyrifera_M_contig68393:225..977-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68393.16459.1 ID=mRNA_M-pyrifera_M_contig68393.16459.1|Name=mRNA_M-pyrifera_M_contig68393.16459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig68393:225..977- (Macrocystis pyrifera P11B4 male)
GCTCGTGCGTTGCTGCACCGCTGTGGGATTCCATACGTGGAGAGCCGGCA
CATTCCGTTCGTGCACATGCTGGCTGTGAAGTGGGCTGCTTCTGGCGCCA
AGCCAGGGGTGTTGCGGGGAGACCGCGCGTCTTCTCCCTATTCGACCCCG
CTGCTGATTGCGGAGGACGGGGAGGTGGTGTCGGGGACGCGGGAGATTTT
CGAGTGGGCAAGGCGGCGAGTGGTGGGCGGAGGAGGGTGTGGGAAGGAGC
TGGAGGCGTTTTTGGAGCTGGATGAGACTTGGGCGAAAGAATTGCACGAC
CGTTTGGGCGTAAACGCCAGAGTGCTCGGCTACCACTGGCTCCTGCAGGG
CGGCGCTGGCTCTTTCTCGCAGTCCGTGACCGGCAGCGTGCCGGCCTGGC
AGCAGACTCTGCTGCGCTGGCTCTATCCGCTGTTCGGAATGGCCATCCAC
GGGTTCATGCGAGTGCACGACCCACGACGCGTCGCCAAGGCCGAAAAAGT
TGTCGACGACATCTTCGAGAGAGCCAGCGCGGCGCTGGAGCGCGCTGGCT
CTATTTCGGGCGCTGCGGCGCCCAACGCCACAGACCTCTACTTTGCAGCT
CTTTCTTATCCTGTGCTGGGCTTACAATCCACCTCTGGCGCCCCTCTCCC
CGCCGCTCTCGTGCCCCACGCTCCACCAGACCACCTCCACAGACTCCGCT
CCTCCAACGCAGGCAAACTCGCCTCTGCTCTCCTCCGAAACCTCGCGCCA
GCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68393:225..977-

>mRNA_M-pyrifera_M_contig68393.16459.1 ID=mRNA_M-pyrifera_M_contig68393.16459.1|Name=mRNA_M-pyrifera_M_contig68393.16459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1506bp|location=Sequence derived from alignment at M-pyrifera_M_contig68393:225..977- (Macrocystis pyrifera P11B4 male)
GCTCGTGCGTTGCTGCACCGCTGTGGGATTCCATACGTGGAGAGCCGGCA
CATTCCGTTCGTGCACATGCTGGCTGTGAAGTGGGCTGCTTCTGGCGCCA
AGCCAGGGGTGTTGCGGGGAGACCGCGCGTCTTCTCCCTATTCGACCCCG
CTGCTGATTGCGGAGGACGGGGAGGTGGTGTCGGGGACGCGGGAGATTTT
CGAGTGGGCAAGGCGGCGAGTGGTGGGCGGAGGAGGGTGTGGGAAGGAGC
TGGAGGCGTTTTTGGAGCTGGATGAGACTTGGGCGAAAGAATTGCACGAC
CGTTTGGGCGTAAACGCCAGAGTGCTCGGCTACCACTGGCTCCTGCAGGG
CGGCGCTGGCTCTTTCTCGCAGTCCGTGACCGGCAGCGTGCCGGCCTGGC
AGCAGACTCTGCTGCGCTGGCTCTATCCGCTGTTCGGAATGGCCATCCAC
GGGTTCATGCGAGTGCACGACCCACGACGCGTCGCCAAGGCCGAAAAAGT
TGTCGACGACATCTTCGAGAGAGCCAGCGCGGCGCTGGAGCGCGCTGGCT
CTATTTCGGGCGCTGCGGCGCCCAACGCCACAGACCTCTACTTTGCAGCT
CTTTCTTATCCTGTGCTGGGCTTACAATCCACCTCTGGCGCCCCTCTCCC
CGCCGCTCTCGTGCCCCACGCTCCACCAGACCACCTCCACAGACTCCGCT
CCTCCAACGCAGGCAAACTCGCCTCTGCTCTCCTCCGAAACCTCGCGCCA
GCGGCTCGTGCGTTGCTGCACCGCTGTGGGATTCCATACGTGGAGAGCCG
GCACATTCCGTTCGTGCACATGCTGGCTGTGAAGTGGGCTGCTTCTGGCG
CCAAGCCAGGGGTGTTGCGGGGAGACCGCGCGTCTTCTCCCTATTCGACC
CCGCTGCTGATTGCGGAGGACGGGGAGGTGGTGTCGGGGACGCGGGAGAT
TTTCGAGTGGGCAAGGCGGCGAGTGGTGGGCGGAGGAGGGTGTGGGAAGG
AGCTGGAGGCGTTTTTGGAGCTGGATGAGACTTGGGCGAAAGAATTGCAC
GACCGTTTGGGCGTAAACGCCAGAGTGCTCGGCTACCACTGGCTCCTGCA
GGGCGGCGCTGGCTCTTTCTCGCAGTCCGTGACCGGCAGCGTGCCGGCCT
GGCAGCAGACTCTGCTGCGCTGGCTCTATCCGCTGTTCGGAATGGCCATC
CACGGGTTCATGCGAGTGCACGACCCACGACGCGTCGCCAAGGCCGAAAA
AGTTGTCGACGACATCTTCGAGAGAGCCAGCGCGGCGCTGGAGCGCGCTG
GCTCTATTTCGGGCGCTGCGGCGCCCAACGCCACAGACCTCTACTTTGCA
GCTCTTTCTTATCCTGTGCTGGGCTTACAATCCACCTCTGGCGCCCCTCT
CCCCGCCGCTCTCGTGCCCCACGCTCCACCAGACCACCTCCACAGACTCC
GCTCCTCCAACGCAGGCAAACTCGCCTCTGCTCTCCTCCGAAACCTCGCG
CCAGCG
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