mRNA_M-pyrifera_M_contig68387.16456.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68387.16456.1
Unique NamemRNA_M-pyrifera_M_contig68387.16456.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A7N0URH8_KALFE (3'-5' exonuclease domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0URH8_KALFE)

HSP 1 Score: 101 bits (252), Expect = 3.660e-23
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 1
Query:    1 EIESWLTRNRTKMG-AVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDV------EVKHEGNLMSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREIE 483
            ++  ++ R R ++G A++GFD+EWRP+FR G    RV+V+Q+C  + +        S +P +L  +L D +   VGVG   D+VKL KD  V     +D+      ++  E  + SL++L + LFH    K  ++ L NWE   LS PQL YAALDA+ S+ +H+ ++
Sbjct:  103 QLLKFVERKRKEVGQAILGFDIEWRPSFRRGISPGRVAVMQICCDTSLCYVMHIFHSGIPHSLHLLLEDPASTKVGVGIGNDSVKLFKDHNVSTKDVQDLSKLANQKLGGELKMWSLRSLIEELFHKQLEKPCEVQLGNWEAKYLSNPQLKYAALDAYASWCLHQALD 270          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A151SQB5_CAJCA (Werner syndrome ATP-dependent helicase isogeny n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SQB5_CAJCA)

HSP 1 Score: 100 bits (250), Expect = 8.280e-23
Identity = 61/159 (38.36%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   22 RNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVEVKHEGNL-----MSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREIE 483
            R R  M  V+GFD+EW+PTF+ G P  +V+V+Q+C  +          S +P+ LQ +L D +V  VG G   DAVK+ KD+ + V G  D+       L       L +LA+ L      K KK+ L NWE   LS  QL YAA DAF S+++++ I+
Sbjct:  110 RKREMMQIVIGFDIEWKPTFKKGVPPGKVAVMQICGDTSHCHVLHLIHSGIPQNLQLLLEDPTVLKVGAGIDGDAVKVFKDYNISVKGVMDLSFHANQKLGGDQKWGLASLAEKLLSKQLKKPKKIRLGNWETPILSQGQLEYAATDAFASWYLYQAIK 268          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A2G9I5G2_9LAMI (DNA helicase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I5G2_9LAMI)

HSP 1 Score: 94.4 bits (233), Expect = 5.460e-21
Identity = 57/153 (37.25%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   46 VVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVV--------GAKDVEVKHEGNLMSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREI 480
            +VG DVEWRPTF++ + I  ++ LQLCVG   L+  +    R+P  L+  LGD     VGVG   D  KL  D+G++V          AK+++ K  G   SL+ LA  +      K   ++LS+W+   L+  Q++YA LDA++SF I R++
Sbjct:   57 IVGLDVEWRPTFKANS-IQPLATLQLCVGKSCLIFQIIHAKRIPSQLKKFLGDPDYTFVGVGIENDVRKLRNDYGLKVADTRDLRSWAAKELDRKELGR-SSLKVLAGEVLGEDLAKPTNITLSSWDNRSLTKAQVSYACLDAYFSFEIGRQL 207          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A371HWL1_MUCPR (Werner Syndrome-like exonuclease (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HWL1_MUCPR)

HSP 1 Score: 95.1 bits (235), Expect = 1.290e-20
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   22 RNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVEVKHEGNL-----MSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREIE 483
            + R  +   +GFD+EW+PTFR G P  +V+V+Q+C  +          S +PR LQ +L D +V  VG G   DAVK+ +D+ + V G  D+       L       L +L + L      K +K+ L NWE   LS  QL YAA DAF S+ +++ I+
Sbjct:  113 KKREMIQIAIGFDIEWKPTFRKGVPPGKVAVMQICGDTSSCYVLHLIHSGIPRNLQLLLEDPTVLKVGAGIDGDAVKVFRDYNISVKGVTDLSFHANQKLGGDHKWGLASLTEKLLSKQLKKPQKIRLGNWETPILSKQQLEYAATDAFASWCLYQAIK 271          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: UPI001E692520 (Werner Syndrome-like exonuclease isoform X1 n=2 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E692520)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-20
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   22 RNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVEV----KHEGNL--MSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHR 474
            + R  M   +GFD+EW+PTFR G P  + +V+Q+C  +          S +P+ LQ +L D +V  VG G   DA K+S+D+G+ + G +D+      K  G L    L +L + L      K  K+ + NWE   LS  QL YAA DAF S+++++
Sbjct:  137 KKREMMQIAIGFDIEWKPTFRRGVPPGKAAVMQICCDTNHCHVLHLIHSGIPQNLQLLLEDPTVLKVGAGIAGDATKVSRDYGISIKGVEDLSFHANQKIGGGLHKWGLASLTEKLLSKQLMKPSKIRMGNWETPFLSKEQLDYAATDAFASWFLYQ 293          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A5J9VJL8_9POAL (3'-5' exonuclease domain-containing protein (Fragment) n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9VJL8_9POAL)

HSP 1 Score: 92.4 bits (228), Expect = 2.360e-20
Identity = 64/171 (37.43%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    4 IESWLTR-----NRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVE-VKHEG-NLMSLQN-----LAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREI 480
            +E+WLT       R     VVGFDVEWRP++RS    N V+ LQLCVG   L+  +     +P AL   LG+     VGVG   D  +LS D  ++V  A D+  +  EG NL  L+      +A ++      KS+++++S W+   LS  Q+ YA +DAF SF I R +
Sbjct:   27 VEAWLTEVRSVHRRRLNDLVVGFDVEWRPSYRSDQ--NPVATLQLCVGRRCLIFQLLHADYIPGALSEFLGEPGFRFVGVGVDGDVERLSDDHELKVANAVDLRGLAAEGMNLPELRQAGLRAVAAAVMGVNVVKSQRVTMSRWDASCLSYEQIRYACIDAFVSFEIGRRL 195          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A8B8JUZ3_ABRPR (Werner Syndrome-like exonuclease isoform X1 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JUZ3_ABRPR)

HSP 1 Score: 94.4 bits (233), Expect = 2.570e-20
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   22 RNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVEVKHEGNL------MSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREIE 483
            + R      VGFD+EWRPTFR G P  +V+V+Q+C  +          S +PR LQ +L D +V  VG G   DA K+ +D+ + V G +D+       L        L +L + L      K  K+ L NWE   LS  QL YAA DAF S+++++ I+
Sbjct:  114 KKREMTRIAVGFDIEWRPTFRKGVPPGKVAVMQICGDTSHCHVLHLIHSGIPRNLQLLLEDPTVLKVGAGIGGDAGKIFRDYNISVKGVEDLSFHANQKLGGGPLKWGLASLTEKLLSRQLKKPSKIRLGNWETPVLSKEQLEYAATDAFASWYLYQAIK 273          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: UPI00103693E3 (Werner Syndrome-like exonuclease isoform X4 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103693E3)

HSP 1 Score: 92.8 bits (229), Expect = 2.760e-20
Identity = 58/160 (36.25%), Postives = 87/160 (54.37%), Query Frame = 1
Query:   19 TRNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDV------EVKHEGNLMSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREI 480
            TR R     ++GFD+EWRPTFR G    + +V+Q+C  +          S +P+ LQ++L D +   VGVG V DA K+ KD  V + G +D+      ++  +    SL +L + L      K +K+ L NWE   LS  QL YAA DAF S+++H+ +
Sbjct:   44 TRKRGVDQVILGFDIEWRPTFRRGVSPGKAAVMQICGDTSHCYVMHIIHSGIPQNLQALLEDPTSVKVGVGIVNDAFKVFKDHNVSIKGLEDLSGLANQKLGGDPKKWSLASLTEMLICKQLPKPEKIRLGNWEADFLSKEQLEYAATDAFVSWYLHQAL 203          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: A0A396IWX4_MEDTR (Putative DNA helicase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IWX4_MEDTR)

HSP 1 Score: 94.4 bits (233), Expect = 3.360e-20
Identity = 55/160 (34.38%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   22 RNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVEVKHEGNL------MSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIHREIE 483
            + R  +   +GFD+EWRPTF+ G P  + +V+Q+C  +   +      S +PR LQ +L D+SV  VG G   DA K+S+D+ + + G +D+       L        L +L + L      K  K+ + NWE   LS  QL YAA DAF S+++++ I+
Sbjct:  131 KKRDMIQIPIGFDIEWRPTFKRGVPPGKTAVMQICCDTNHCLVLHLIHSGIPRNLQLLLEDSSVLKVGAGIGGDASKVSRDYFISIKGVEDLSYHANQKLGGGPNKWGLASLTEKLLSKQLKKPSKIRMGNWETPYLSKEQLEYAATDAFASWFLYQTIK 290          
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Match: UPI0018FF3094 (Werner Syndrome-like exonuclease n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0018FF3094)

HSP 1 Score: 94.4 bits (233), Expect = 3.450e-20
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   49 VGFDVEWRPTFRSGAPINRVSVLQLCV-GSEVLVASVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVEVKHEGNLM------SLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDAFWSFWIH 471
            +GFD+EW+PTFR G P  + +V+QLC+  S+  V  +   S +P++LQ++L D ++   GVG V DA K+ KD+ V +    ++       L       SL +L ++L      K  K+ L NWE   LS  QL YAA DAF S+++H
Sbjct:  148 IGFDIEWKPTFRRGVPPGKAAVMQLCLDNSQCHVMHIIH-SGIPQSLQALLEDDTLTKAGVGIVNDATKVLKDYNVSIKAVDEISDIANQKLAGFPRKWSLGSLTETLISKELQKPNKIRLGNWEVAVLSTEQLQYAATDAFASWYLH 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68387.16456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7N0URH8_KALFE3.660e-2336.313'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A151SQB5_CAJCA8.280e-2338.36Werner syndrome ATP-dependent helicase isogeny n=2... [more]
A0A2G9I5G2_9LAMI5.460e-2137.25DNA helicase n=1 Tax=Handroanthus impetiginosus Ta... [more]
A0A371HWL1_MUCPR1.290e-2035.85Werner Syndrome-like exonuclease (Fragment) n=1 Ta... [more]
UPI001E6925201.330e-2035.67Werner Syndrome-like exonuclease isoform X1 n=2 Ta... [more]
A0A5J9VJL8_9POAL2.360e-2037.433'-5' exonuclease domain-containing protein (Fragm... [more]
A0A8B8JUZ3_ABRPR2.570e-2036.25Werner Syndrome-like exonuclease isoform X1 n=2 Ta... [more]
UPI00103693E32.760e-2036.25Werner Syndrome-like exonuclease isoform X4 n=1 Ta... [more]
A0A396IWX4_MEDTR3.360e-2034.38Putative DNA helicase n=2 Tax=Medicago truncatula ... [more]
UPI0018FF30943.450e-2037.84Werner Syndrome-like exonuclease n=1 Tax=Benincasa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68387contigM-pyrifera_M_contig68387:746..1228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score96.7
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog3885.XP_007163817.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.Werner Syndrome-like
EggNOG OGs37R47@33090,3GATX@35493,4JN7Z@91835,KOG4373@1,KOG4373@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.2768667-CDS-M-pyrifera_M_contig68387:745..12281622816575.2768667-CDS-M-pyrifera_M_contig68387:745..1228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68387 746..1228 -
1692278055.8066049-CDS-M-pyrifera_M_contig68387:745..12281692278055.8066049-CDS-M-pyrifera_M_contig68387:745..1228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68387 746..1228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68387.16456.1prot_M-pyrifera_M_contig68387.16456.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68387 746..1228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68387.16456.1

>prot_M-pyrifera_M_contig68387.16456.1 ID=prot_M-pyrifera_M_contig68387.16456.1|Name=mRNA_M-pyrifera_M_contig68387.16456.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
EIESWLTRNRTKMGAVVGFDVEWRPTFRSGAPINRVSVLQLCVGSEVLVA
SVNRLSRLPRALQSVLGDASVALVGVGAVADAVKLSKDWGVRVVGAKDVE
VKHEGNLMSLQNLAQSLFHTPKWKSKKLSLSNWERVPLSAPQLTYAALDA
FWSFWIHREIE
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mRNA from alignment at M-pyrifera_M_contig68387:746..1228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68387.16456.1 ID=mRNA_M-pyrifera_M_contig68387.16456.1|Name=mRNA_M-pyrifera_M_contig68387.16456.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig68387:746..1228- (Macrocystis pyrifera P11B4 male)
GAGATAGAGTCTTGGTTGACCCGAAATAGGACGAAAATGGGCGCAGTCGT TGGTTTTGACGTGGAGTGGCGTCCTACGTTCCGCTCTGGTGCACCAATCA ATCGTGTGAGTGTGTTACAATTGTGTGTCGGGAGTGAAGTGTTGGTGGCG AGTGTGAATCGACTCTCTCGGCTTCCTCGAGCACTCCAAAGCGTGCTTGG TGATGCATCCGTAGCATTGGTTGGAGTGGGGGCTGTTGCTGATGCTGTAA AGCTGAGTAAAGACTGGGGAGTGCGAGTTGTGGGCGCCAAGGATGTAGAA GTGAAGCATGAAGGGAATTTGATGAGTTTGCAAAATCTTGCTCAATCCCT TTTCCACACTCCCAAGTGGAAATCCAAGAAACTCAGTCTCTCCAATTGGG AACGTGTCCCTCTCAGCGCCCCACAACTCACATATGCAGCGTTAGATGCC TTTTGGAGTTTTTGGATCCATCGAGAAATCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68387:746..1228-

>mRNA_M-pyrifera_M_contig68387.16456.1 ID=mRNA_M-pyrifera_M_contig68387.16456.1|Name=mRNA_M-pyrifera_M_contig68387.16456.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig68387:746..1228- (Macrocystis pyrifera P11B4 male)
GAGATAGAGTCTTGGTTGACCCGAAATAGGACGAAAATGGGCGCAGTCGT
TGGTTTTGACGTGGAGTGGCGTCCTACGTTCCGCTCTGGTGCACCAATCA
ATCGTGTGAGTGTGTTACAATTGTGTGTCGGGAGTGAAGTGTTGGTGGCG
AGTGTGAATCGACTCTCTCGGCTTCCTCGAGCACTCCAAAGCGTGCTTGG
TGATGCATCCGTAGCATTGGTTGGAGTGGGGGCTGTTGCTGATGCTGTAA
AGCTGAGTAAAGACTGGGGAGTGCGAGTTGTGGGCGCCAAGGATGTAGAA
GTGAAGCATGAAGGGAATTTGATGAGTTTGCAAAATCTTGCTCAATCCCT
TTTCCACACTCCCAAGTGGAAATCCAAGAAACTCAGTCTCTCCAATTGGG
AACGTGTCCCTCTCAGCGCCCCACAACTCACATATGCAGCGTTAGATGCC
TTTTGGAGTTTTTGGATCCATCGAGAAATCGAGGAGATAGAGTCTTGGTT
GACCCGAAATAGGACGAAAATGGGCGCAGTCGTTGGTTTTGACGTGGAGT
GGCGTCCTACGTTCCGCTCTGGTGCACCAATCAATCGTGTGAGTGTGTTA
CAATTGTGTGTCGGGAGTGAAGTGTTGGTGGCGAGTGTGAATCGACTCTC
TCGGCTTCCTCGAGCACTCCAAAGCGTGCTTGGTGATGCATCCGTAGCAT
TGGTTGGAGTGGGGGCTGTTGCTGATGCTGTAAAGCTGAGTAAAGACTGG
GGAGTGCGAGTTGTGGGCGCCAAGGATGTAGAAGTGAAGCATGAAGGGAA
TTTGATGAGTTTGCAAAATCTTGCTCAATCCCTTTTCCACACTCCCAAGT
GGAAATCCAAGAAACTCAGTCTCTCCAATTGGGAACGTGTCCCTCTCAGC
GCCCCACAACTCACATATGCAGCGTTAGATGCCTTTTGGAGTTTTTGGAT
CCATCGAGAAATCGAG
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