mRNA_M-pyrifera_M_contig68370.16454.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68370.16454.1
Unique NamemRNA_M-pyrifera_M_contig68370.16454.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68370.16454.1 vs. uniprot
Match: D7G8L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L4_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.520e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 QVSLNENDWDTHISFTVMAMAASSDGKYLIGATDKSR 111
            +VSLNE +WDTH+SFTVM+MAAS DGKYL+ ATDKSR
Sbjct:   59 RVSLNEKEWDTHVSFTVMSMAASGDGKYLLAATDKSR 95
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BLAST of mRNA_M-pyrifera_M_contig68370.16454.1 vs. uniprot
Match: A0A6H5JKD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.740e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 QVSLNENDWDTHISFTVMAMAASSDGKYLIGATDKSR 111
            +VSLNE +WDTH+SFTVM+MAAS DGKYL+ ATDKSR
Sbjct:  138 RVSLNEKEWDTHVSFTVMSMAASGDGKYLLAATDKSR 174
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BLAST of mRNA_M-pyrifera_M_contig68370.16454.1 vs. uniprot
Match: A0A7S2SGN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGN2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.560e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QVSLNENDWDTHISFTVMAMAASSDGKYLIGATDKSR 111
            +VSLN + WDTH+SF V+ + AS DG+YL+ ATDK R
Sbjct:  205 EVSLNASAWDTHVSFNVLHLEASPDGRYLLAATDKDR 241
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BLAST of mRNA_M-pyrifera_M_contig68370.16454.1 vs. uniprot
Match: A0A7S2SGK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGK4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.630e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QVSLNENDWDTHISFTVMAMAASSDGKYLIGATDKSR 111
            +VSLN + WDTH+SF V+ + AS DG+YL+ ATDK R
Sbjct:  370 EVSLNASAWDTHVSFNVLHLEASPDGRYLLAATDKDR 406
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BLAST of mRNA_M-pyrifera_M_contig68370.16454.1 vs. uniprot
Match: A0A836CE45_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE45_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.560e-7
Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QVSLNENDWDTHISFTVMAMAASSDGKYLIGATDKSR 111
            +VS+N N WD H+SF+V+ +AAS DG+Y++ ATD++R
Sbjct:  162 RVSVNANAWDAHVSFSVLGLAASPDGRYVLAATDRAR 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68370.16454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8L4_ECTSI2.520e-1278.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKD0_9PHAE6.740e-1278.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SGN2_9STRA6.560e-759.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SGK4_9STRA6.630e-759.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CE45_9STRA8.560e-754.05WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68370contigM-pyrifera_M_contig68370:223..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog2880.D7G8L4
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.WD40 repeats
EggNOG OGs28N03@1,2S80F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.190751-CDS-M-pyrifera_M_contig68370:222..3361622816575.190751-CDS-M-pyrifera_M_contig68370:222..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68370 223..336 -
1692278055.7509842-CDS-M-pyrifera_M_contig68370:222..3361692278055.7509842-CDS-M-pyrifera_M_contig68370:222..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68370 223..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68370.16454.1prot_M-pyrifera_M_contig68370.16454.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68370 223..336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68370.16454.1

>prot_M-pyrifera_M_contig68370.16454.1 ID=prot_M-pyrifera_M_contig68370.16454.1|Name=mRNA_M-pyrifera_M_contig68370.16454.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
QVSLNENDWDTHISFTVMAMAASSDGKYLIGATDKSR*
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mRNA from alignment at M-pyrifera_M_contig68370:223..336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68370.16454.1 ID=mRNA_M-pyrifera_M_contig68370.16454.1|Name=mRNA_M-pyrifera_M_contig68370.16454.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig68370:223..336- (Macrocystis pyrifera P11B4 male)
CAGGTGAGCCTGAACGAGAATGACTGGGACACCCACATTTCCTTCACGGT
GATGGCCATGGCGGCATCGTCCGACGGGAAGTACCTCATTGGCGCTACCG
ACAAGAGTCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68370:223..336-

>mRNA_M-pyrifera_M_contig68370.16454.1 ID=mRNA_M-pyrifera_M_contig68370.16454.1|Name=mRNA_M-pyrifera_M_contig68370.16454.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig68370:223..336- (Macrocystis pyrifera P11B4 male)
CAGGTGAGCCTGAACGAGAATGACTGGGACACCCACATTTCCTTCACGGT
GATGGCCATGGCGGCATCGTCCGACGGGAAGTACCTCATTGGCGCTACCG
ACAAGAGTCGGTGACAGGTGAGCCTGAACGAGAATGACTGGGACACCCAC
ATTTCCTTCACGGTGATGGCCATGGCGGCATCGTCCGACGGGAAGTACCT
CATTGGCGCTACCGACAAGAGTCGGTGA
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