mRNA_M-pyrifera_M_contig68357.16452.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68357.16452.1
Unique NamemRNA_M-pyrifera_M_contig68357.16452.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: A0A1V9Z7T4_9STRA (Prefoldin subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7T4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-22
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   46 QDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQKR 351
            Q++Q L  +  GLR+A  RFADS+ ALQ L  ++ GK +LVP+TS+MFVPGKL +   VLVD+G G+FV KN+E+A     +K+  +  + E++   +  KR
Sbjct:   24 QELQQLTASFSGLREAQSRFADSKGALQALQPENLGKKVLVPLTSSMFVPGKLANVKSVLVDVGTGYFVEKNVEEAKGFMDRKVDFLQKSTESLKEVMEGKR 125
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: A0A067BXM7_SAPPC (Prefoldin n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BXM7_SAPPC)

HSP 1 Score: 94.7 bits (234), Expect = 1.900e-22
Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   46 QDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQKR 351
            Q++Q L ++  GLR+A  RFADS+ ALQ L+  + GK +LVP+TS+MFVPGKL +   VLVD+G G+FV KN++DA +   +K++ +    +++   +  KR
Sbjct:   24 QELQQLTSSFSGLREAQTRFADSKGALQALEPTNLGKKVLVPLTSSMFVPGKLSNVKSVLVDVGTGYFVEKNVDDAKSFMDRKVEFLQKNTDSLKEVIEAKR 125
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: A0A0L0DSI6_THETB (Prefoldin, alpha subunit n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSI6_THETB)

HSP 1 Score: 92.4 bits (228), Expect = 2.070e-21
Identity = 43/116 (37.07%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 IPHTPINSISSSLQLQDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQK 348
            +P   +  +  SL+ QD+++L  +  GL  A  +F  SRA+L+ +++D+ GKD+L+P+T++M+VPGKL   S+V+VD+G G++V K++ DA A F +K++ + +  E +  Q+  K
Sbjct:   13 LPLDKLQMVGKSLE-QDLENLTASYSGLSVAAAKFRTSRASLEAINDDNQGKDVLLPLTTSMYVPGKLADVSKVMVDVGTGYYVEKSIPDAQAFFDRKLEFLKSQSEAVEKQIATK 127
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: A0A7M7G3L6_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7G3L6_STRPU)

HSP 1 Score: 90.9 bits (224), Expect = 7.500e-21
Identity = 44/116 (37.93%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:    1 IPHTPINSISSSLQLQDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQK 348
            +P   +N +   L  Q+V+ +  +L+ L+ A  RF +S  ++ +L++D+ GK+MLVP+TS+++VPGKL   + VL+DIG G+FV K LE+A   F +K+  +T  +E +   L +K
Sbjct:   12 LPLPQLNGLKEQLD-QEVEMMQNSLQQLKMAQSRFVESSDSISKLNKDNEGKEMLVPLTSSLYVPGKLQDVNNVLIDIGTGYFVEKPLEEAKKYFKRKVDFVTKQMEKVQPVLIEK 126
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: H2SYT7_TAKRU (Uncharacterized protein n=5 Tax=Tetraodontidae TaxID=31031 RepID=H2SYT7_TAKRU)

HSP 1 Score: 89.4 bits (220), Expect = 2.920e-20
Identity = 41/101 (40.59%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   46 QDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQK 348
            QD++ L +++  L+ +  +F D++ +L  L+E++ GK++LVP+TS+M+VPG L     VLVD+G G++V KN++D+ A F +KI+ +T  IE I   L +K
Sbjct:   22 QDIEFLTSSIGQLKVSQNKFVDAKDSLNVLNENNKGKELLVPLTSSMYVPGSLNDVENVLVDVGTGYYVEKNVKDSKAFFKRKIEFLTKQIEKIQPVLQEK 122
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: A0A2I4BA51_9TELE (prefoldin subunit 5 n=4 Tax=Aplocheiloidei TaxID=45443 RepID=A0A2I4BA51_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 3.000e-20
Identity = 42/101 (41.58%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   46 QDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQK 348
            Q+V+ L +++  L+ A  +F +++ +L  L++++ GK+MLVP+TS+M+VPG L     VLVD+G G++V KN+ED+ A F +KI  +T  IE I   L +K
Sbjct:   22 QEVEFLTSSISQLKVAQSKFVEAKDSLNVLNQNNKGKEMLVPLTSSMYVPGTLNDVDHVLVDVGTGYYVEKNVEDSKAFFKRKIDFLTKQIEKIQPPLQEK 122
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: UPI001BB0E019 (prefoldin subunit 5-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB0E019)

HSP 1 Score: 89.4 bits (220), Expect = 3.070e-20
Identity = 43/116 (37.07%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:    1 IPHTPINSISSSLQLQDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQK 348
            +P   +N +   L  Q+V+ +  +L+ L+ A  RF +S  ++ +L+ D+ GK+MLVP+TS+++VPGKL   + VL+DIG G++V K+LE+A   F +K+  +T  +E +   L +K
Sbjct:   13 LPIPQLNGLKEQLD-QEVEMMQGSLQQLKMAQSRFMESSESIAKLNSDNEGKEMLVPLTSSLYVPGKLQDVNNVLIDIGTGYYVEKSLEEAKKYFKRKVDFVTKQMEKVQPVLIEK 127
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: W4GKB3_9STRA (Prefoldin, alpha subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKB3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.640e-20
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:   46 QDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQKR 351
            Q++Q L ++  GLR+A  RF+DS+ ALQ L   + GK +LVP+T++M+VPGKL +   VLVD+G G+FV KN+E+A     +K+  +    E++   L  KR
Sbjct:   26 QELQQLTSSFTGLREAQTRFSDSKVALQSLQPANLGKRVLVPLTASMYVPGKLTNVETVLVDVGTGYFVEKNVEEAKGFMDRKVAFLQQNTESLKDVLENKR 127
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: K4GIZ1_CALMI (Prefoldin subunit 5 n=2 Tax=Callorhinchus milii TaxID=7868 RepID=K4GIZ1_CALMI)

HSP 1 Score: 88.6 bits (218), Expect = 5.990e-20
Identity = 41/116 (35.34%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:    1 IPHTPINSISSSLQLQDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQK 348
            +P   + ++ S L+ Q+ + L ++++ L+    ++ +S+ +L +L++D++GKD+LVP+TS+M+VPGKL     VL+D+G G++V K +E+A   F +K+  +T  IE I   L +K
Sbjct:   10 LPLQQLEALRSQLE-QETEFLTSSIQQLKMVQTKYVESKESLIKLNKDNAGKDVLVPLTSSMYVPGKLNDVEHVLIDVGTGYYVEKTVEEAREFFKRKVDFVTKQIEKIQPALQEK 124
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BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Match: A0A8K1FMR5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMR5_PYTOL)

HSP 1 Score: 87.4 bits (215), Expect = 1.420e-19
Identity = 45/118 (38.14%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:    1 IPHTPINSISSSLQLQDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDSGKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIKEITAAIETISAQLTQKRE 354
            +P   ++S+ + L+ Q+++ L T+  GLR+A  RF +S+ AL  L + +  K +LVP+TS+MFVPG L +  EVLVDIG G+FV +N++DA     +K+  +    +++   L  KR+
Sbjct:   13 LPLEQLSSLKTQLE-QELKQLTTSFGGLREAQARFQESKEALGSLSDKNLDKQILVPLTSSMFVPGTLSNVQEVLVDIGTGYFVEQNVDDAKKFMDRKVAFLQTNTDSLKTVLESKRQ 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68357.16452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9Z7T4_9STRA1.020e-2245.10Prefoldin subunit n=1 Tax=Achlya hypogyna TaxID=12... [more]
A0A067BXM7_SAPPC1.900e-2244.12Prefoldin n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A... [more]
A0A0L0DSI6_THETB2.070e-2137.07Prefoldin, alpha subunit n=1 Tax=Thecamonas trahen... [more]
A0A7M7G3L6_STRPU7.500e-2137.93Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
H2SYT7_TAKRU2.920e-2040.59Uncharacterized protein n=5 Tax=Tetraodontidae Tax... [more]
A0A2I4BA51_9TELE3.000e-2041.58prefoldin subunit 5 n=4 Tax=Aplocheiloidei TaxID=4... [more]
UPI001BB0E0193.070e-2037.07prefoldin subunit 5-like n=1 Tax=Lytechinus varieg... [more]
W4GKB3_9STRA3.640e-2043.14Prefoldin, alpha subunit n=2 Tax=Aphanomyces astac... [more]
K4GIZ1_CALMI5.990e-2035.34Prefoldin subunit 5 n=2 Tax=Callorhinchus milii Ta... [more]
A0A8K1FMR5_PYTOL1.420e-1938.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68357contigM-pyrifera_M_contig68357:883..1236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1e-17
Seed eggNOG ortholog112098.XP_008608379.1
Preferred namePFDN5
KEGG rclassRC00055,RC00523
KEGG koko:K01881,ko:K03678,ko:K04797,ko:K09504
KEGG ReactionR03661
KEGG Pathwayko00970,ko03018,ko05203,map00970,map03018,map05203
KEGG ModuleM00359,M00360,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0007021,GO:0007275,GO:0007423,GO:0008092,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0022607,GO:0023051,GO:0023057,GO:0030111,GO:0030178,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032153,GO:0032501,GO:0032502,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034622,GO:0043010,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051286,GO:0060041,GO:0060255,GO:0060828,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:0090090,GO:0140110,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.sister chromatid segregation
EggNOG OGsCOG1730@1,KOG3048@2759
EC6.1.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03019,ko03029,ko03110
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.9451623-CDS-M-pyrifera_M_contig68357:882..12361622816574.9451623-CDS-M-pyrifera_M_contig68357:882..1236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68357 883..1236 +
1692278055.5633557-CDS-M-pyrifera_M_contig68357:882..12361692278055.5633557-CDS-M-pyrifera_M_contig68357:882..1236Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68357 883..1236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68357.16452.1prot_M-pyrifera_M_contig68357.16452.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68357 883..1236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68357.16452.1

>prot_M-pyrifera_M_contig68357.16452.1 ID=prot_M-pyrifera_M_contig68357.16452.1|Name=mRNA_M-pyrifera_M_contig68357.16452.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
IPHTPINSISSSLQLQDVQSLNTNLEGLRQAHKRFADSRAALQELDEDDS
GKDMLVPMTSNMFVPGKLGSTSEVLVDIGAGFFVTKNLEDAAAIFTKKIK
EITAAIETISAQLTQKRE
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mRNA from alignment at M-pyrifera_M_contig68357:883..1236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68357.16452.1 ID=mRNA_M-pyrifera_M_contig68357.16452.1|Name=mRNA_M-pyrifera_M_contig68357.16452.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig68357:883..1236+ (Macrocystis pyrifera P11B4 male)
ATTCCCCATACTCCAATCAACTCAATCTCCTCTTCATTGCAATTGCAGGA
TGTACAATCTCTGAACACAAACTTGGAAGGACTGCGACAAGCACACAAGC
GATTCGCTGATTCACGCGCAGCGTTGCAAGAGTTGGATGAGGACGACAGT
GGCAAGGACATGCTGGTGCCAATGACGAGCAACATGTTCGTGCCAGGCAA
ATTGGGATCCACAAGTGAAGTTCTCGTTGACATCGGTGCAGGATTCTTCG
TCACCAAAAACTTGGAAGATGCGGCAGCAATCTTCACGAAAAAGATCAAG
GAAATCACAGCCGCAATCGAAACAATCTCTGCGCAACTCACACAAAAGAG
AGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68357:883..1236+

>mRNA_M-pyrifera_M_contig68357.16452.1 ID=mRNA_M-pyrifera_M_contig68357.16452.1|Name=mRNA_M-pyrifera_M_contig68357.16452.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig68357:883..1236+ (Macrocystis pyrifera P11B4 male)
ATTCCCCATACTCCAATCAACTCAATCTCCTCTTCATTGCAATTGCAGGA
TGTACAATCTCTGAACACAAACTTGGAAGGACTGCGACAAGCACACAAGC
GATTCGCTGATTCACGCGCAGCGTTGCAAGAGTTGGATGAGGACGACAGT
GGCAAGGACATGCTGGTGCCAATGACGAGCAACATGTTCGTGCCAGGCAA
ATTGGGATCCACAAGTGAAGTTCTCGTTGACATCGGTGCAGGATTCTTCG
TCACCAAAAACTTGGAAGATGCGGCAGCAATCTTCACGAAAAAGATCAAG
GAAATCACAGCCGCAATCGAAACAATCTCTGCGCAACTCACACAAAAGAG
AGAGATTCCCCATACTCCAATCAACTCAATCTCCTCTTCATTGCAATTGC
AGGATGTACAATCTCTGAACACAAACTTGGAAGGACTGCGACAAGCACAC
AAGCGATTCGCTGATTCACGCGCAGCGTTGCAAGAGTTGGATGAGGACGA
CAGTGGCAAGGACATGCTGGTGCCAATGACGAGCAACATGTTCGTGCCAG
GCAAATTGGGATCCACAAGTGAAGTTCTCGTTGACATCGGTGCAGGATTC
TTCGTCACCAAAAACTTGGAAGATGCGGCAGCAATCTTCACGAAAAAGAT
CAAGGAAATCACAGCCGCAATCGAAACAATCTCTGCGCAACTCACACAAA
AGAGAGAG
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