mRNA_M-pyrifera_M_contig6835.16448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6835.16448.1
Unique NamemRNA_M-pyrifera_M_contig6835.16448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6835.16448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6835contigM-pyrifera_M_contig6835:11107..11785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size679
Cds size402
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.6299477-CDS-M-pyrifera_M_contig6835:11106..115081622816574.6299477-CDS-M-pyrifera_M_contig6835:11106..11508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6835 11107..11508 +
1692278055.3182821-CDS-M-pyrifera_M_contig6835:11106..115081692278055.3182821-CDS-M-pyrifera_M_contig6835:11106..11508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6835 11107..11508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.6416755-UTR-M-pyrifera_M_contig6835:11508..117851622816574.6416755-UTR-M-pyrifera_M_contig6835:11508..11785Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6835 11509..11785 +
1692278055.3290677-UTR-M-pyrifera_M_contig6835:11508..117851692278055.3290677-UTR-M-pyrifera_M_contig6835:11508..11785Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6835 11509..11785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6835.16448.1prot_M-pyrifera_M_contig6835.16448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6835 11107..11508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6835.16448.1

>prot_M-pyrifera_M_contig6835.16448.1 ID=prot_M-pyrifera_M_contig6835.16448.1|Name=mRNA_M-pyrifera_M_contig6835.16448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MGSGKDVDAAGFYGIRQRGASSSRFVVSFLCDCPSHAEILDPASTQAHAG
QLVSCALAHEEWEPIDPCPVVYWRRIETLTEPRVRRDDWLASYGWVASCR
DTKVFRVLSFVKCPSFERVFLVRTWSWQSCLLF*
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mRNA from alignment at M-pyrifera_M_contig6835:11107..11785+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6835.16448.1 ID=mRNA_M-pyrifera_M_contig6835.16448.1|Name=mRNA_M-pyrifera_M_contig6835.16448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=679bp|location=Sequence derived from alignment at M-pyrifera_M_contig6835:11107..11785+ (Macrocystis pyrifera P11B4 male)
ATGGGTAGCGGTAAGGACGTTGACGCGGCGGGGTTTTATGGTATCCGCCA
GAGGGGGGCCTCGTCTTCTCGTTTTGTTGTTTCTTTTTTGTGTGACTGTC
CCAGCCACGCTGAGATTTTGGATCCCGCTTCCACCCAAGCGCATGCGGGC
CAACTCGTGTCATGCGCCTTGGCTCATGAAGAATGGGAACCCATCGATCC
ATGCCCGGTTGTCTATTGGCGGCGGATTGAAACCCTCACGGAACCGCGTG
TCCGTCGGGATGACTGGTTAGCCAGCTACGGCTGGGTAGCTAGCTGTAGA
GATACAAAGGTTTTTCGTGTCCTCAGTTTTGTGAAATGCCCTTCTTTCGA
GAGAGTTTTTCTTGTTCGTACGTGGTCGTGGCAGAGCTGCCTGCTCTTCT
AGGTCATATTATATGCACGACTGTAGCTTTCTTCTAACGTACTTGTAGTT
ACTCCCGCCGGGGTGAAGTTAAAGTGTCGGTGGTGAAGAACCAAATTATG
TCGGCCGAAGCTGTTGCAGGGTAAAAGGCCCTCCCCCTCCCCATCGAGTT
GCTACTGCTGCTATTCGCTTGGATTGGTAATAGTCATGTATCAGATTATG
CCAGCGTATAGTGTTAACGTTTCTTGACCGAAGGAAATCACCGGTGGTGG
TGTAGTGATCAATGAAAGCGCAAATACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6835:11107..11785+

>mRNA_M-pyrifera_M_contig6835.16448.1 ID=mRNA_M-pyrifera_M_contig6835.16448.1|Name=mRNA_M-pyrifera_M_contig6835.16448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig6835:11107..11785+ (Macrocystis pyrifera P11B4 male)
ATGGGTAGCGGTAAGGACGTTGACGCGGCGGGGTTTTATGGTATCCGCCA
GAGGGGGGCCTCGTCTTCTCGTTTTGTTGTTTCTTTTTTGTGTGACTGTC
CCAGCCACGCTGAGATTTTGGATCCCGCTTCCACCCAAGCGCATGCGGGC
CAACTCGTGTCATGCGCCTTGGCTCATGAAGAATGGGAACCCATCGATCC
ATGCCCGGTTGTCTATTGGCGGCGGATTGAAACCCTCACGGAACCGCGTG
TCCGTCGGGATGACTGGTTAGCCAGCTACGGCTGGGTAGCTAGCTGTAGA
GATACAAAGGTTTTTCGTGTCCTCAGTTTTGTGAAATGCCCTTCTTTCGA
GAGAGTTTTTCTTGTTCGTACGTGGTCGTGGCAGAGCTGCCTGCTCTTCT
AGATGGGTAGCGGTAAGGACGTTGACGCGGCGGGGTTTTATGGTATCCGC
CAGAGGGGGGCCTCGTCTTCTCGTTTTGTTGTTTCTTTTTTGTGTGACTG
TCCCAGCCACGCTGAGATTTTGGATCCCGCTTCCACCCAAGCGCATGCGG
GCCAACTCGTGTCATGCGCCTTGGCTCATGAAGAATGGGAACCCATCGAT
CCATGCCCGGTTGTCTATTGGCGGCGGATTGAAACCCTCACGGAACCGCG
TGTCCGTCGGGATGACTGGTTAGCCAGCTACGGCTGGGTAGCTAGCTGTA
GAGATACAAAGGTTTTTCGTGTCCTCAGTTTTGTGAAATGCCCTTCTTTC
GAGAGAGTTTTTCTTGTTCGTACGTGGTCGTGGCAGAGCTGCCTGCTCTT
CTAG
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