mRNA_M-pyrifera_M_contig68320.16440.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68320.16440.1
Unique NamemRNA_M-pyrifera_M_contig68320.16440.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A5A8D566_CAFRO (AB hydrolase-1 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D566_CAFRO)

HSP 1 Score: 95.9 bits (237), Expect = 1.470e-20
Identity = 58/162 (35.80%), Postives = 75/162 (46.30%), Query Frame = 1
Query:   25 PPVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSDTRKEATTDRLTTWEAQAERIM----------------------------------------------------FDVVAHSYGGYVATTLARMRPDLVRRLSLLCPAGHGRYRIMRS 354
            PP++V+HGL  T+ SML L+S L+  LP R+VI+PDL+GFDF  S T +E     L +W  Q   +                                                     FD V HS+GG+V+   A + PD+VRRL LLCP GHGRYR  RS
Sbjct:  289 PPIVVVHGLFTTSSSMLALASALSTALPHRTVILPDLMGFDFSLSRTSRER---HLPSWADQVAALTEALRQLHRAGYRSSQLAPDELVPPATVXXXXXXXXXXXXXXXXXXXXXXXCCFDWVGHSFGGWVSEQAAELYPDMVRRLVLLCPGGHGRYRRYRS 447          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: UPI000412132D (alpha/beta hydrolase n=1 Tax=Inquilinus limosus TaxID=171674 RepID=UPI000412132D)

HSP 1 Score: 56.2 bits (134), Expect = 8.750e-7
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query:   25 PPVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSDTRKEAT-----TDRLTTWEAQAERIMFDVVAHSYGGYVATTLARMRPDLVRRLSLLCP 321
            PPVI++HGL+V+++ M PL+  L+  LP   V+ PDL GF  G SD    A       D L  W           + +S+G  V  TLA   P++V RL L  P
Sbjct:   65 PPVILVHGLVVSSRYMEPLALSLSPALP---VLAPDLPGF--GESDKPPRALDLAGLADALHAWLGACGIARASFIGNSFGCQVLATLAIRHPEVVDRLVLQGP 163          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A0F6YM20_9DELT (Putative hydrolase n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6YM20_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 2.200e-6
Identity = 39/112 (34.82%), Postives = 54/112 (48.21%), Query Frame = 1
Query:    4 GKRMQRLPPVIVIHGLLVTAQSMLPLSSCLANVLPG-RSVIVPDLLGFDFGHSDTRKEATTDRLTTWEAQAERIMFDVV---AHSYGGYVATTLARMRPDLVRRLSLLCPAG 327
            G+    LPPV+V+HG+     +  P    LA +LP  RSV+ P+L G  F     R       L       +R++ + V    +S GG +    AR RP+ VR L LL PAG
Sbjct:   37 GRGAGTLPPVVVVHGI---GSAGAPFGPVLARLLPHVRSVVAPELPGHGFSAPPHRALTPDTLLDVMRDVLDRVIDEPVILCGNSLGGAIVLRYARDRPEKVRGLVLLSPAG 145          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: UPI001C3D77F2 (alpha/beta fold hydrolase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D77F2)

HSP 1 Score: 53.9 bits (128), Expect = 5.340e-6
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 1
Query:   28 PVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSDT--RKEATTDRLTTWEAQAERIMFDVVAHSYGGYVATTLARMRPDLVRRLSLLCPAGHGR 336
            PV+++HGL V+A S+ PL+  LA       V+V DL GF    SD      A  D L    A        +V HS+G +VAT LA   P  VR L LL PA  GR
Sbjct:   35 PVVMVHGLGVSAGSLGPLAEELAR---DHVVLVCDLPGFGRTDSDAIWSTGAAADVLEEVLALRGMGRVTLVGHSWGCHVATVLAARHPGRVRALVLLSPAFDGR 136          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A839YKM8_9RHOB (Dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Limimaricola variabilis TaxID=1492771 RepID=A0A839YKM8_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 6.830e-6
Identity = 39/110 (35.45%), Postives = 51/110 (46.36%), Query Frame = 1
Query:   28 PVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSDTRKEATTDRLTTWEAQAERIMFD--------VVAHSYGGYVATTLARMRPDLVRRLSLLCPAGHG 333
            P++++HG    A    PL   L N    R +I  DL     G S  +K      L     QA    FD        +V HS GG +ATT+A +RP L+R L L+ PAG G
Sbjct:  228 PIVLVHGFAADATGWAPLEKALGNA---REIIRVDLACH--GRSPLKKIENFAGLARLAVQA----FDGLNLEAAHLVGHSLGGAIATTIADIRPRLIRSLGLIAPAGLG 328          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A0F6YNJ3_9DELT (Putative hydrolase n=3 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6YNJ3_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 2.040e-5
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    4 GKRMQRLPPVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSDTRKEATTDRLTTWEAQAERIMFD---VVAHSYGGYVATTLARMRPDLVRRLSLLCPAG 327
            G+    LPPV+++HG+   A    P+ + +   +  R+VI P+L G  +      + A         A  +R++ +   VV +S GG VA   AR RP+ VR L LL PAG
Sbjct:   38 GRGHGALPPVVMVHGIGSAAAPFAPVIARVQEHV--RAVIAPELPGHGWSAPPRGRLAPDTLFEVMGAVIDRLIDEPAVVVGNSLGGAVALDYARTRPEKVRALVLLSPAG 146          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: UPI0006793B4E (alpha/beta fold hydrolase n=1 Tax=Acidobacterium ailaaui TaxID=1382359 RepID=UPI0006793B4E)

HSP 1 Score: 52.0 bits (123), Expect = 2.810e-5
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 1
Query:   25 PPVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSD------TRKEATTDRLTTWEAQAERIMFDVVAHSYGGYVATTLARMRPDLVRRLSLLCPA 324
            P +++IHGLL +A++ +P   CL  +    +V   D L  + G SD          A  DR+  +  QA     DV+  S+GG +A  LA   P+LVR L L  PA
Sbjct:   34 PSLLLIHGLLGSAEAWVP---CLPRLAEDSTVYAVDTL--NIGRSDRVSGLDASLSAQADRMARFMGQAGIHRADVLGTSHGGAIALMLAARHPELVRSLLLHAPA 134          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A2M7H4Q1_9BACT (AB hydrolase-1 domain-containing protein n=1 Tax=Candidatus Kerfeldbacteria bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_45_12 TaxID=2014247 RepID=A0A2M7H4Q1_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 3.450e-5
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 1
Query:   25 PPVIVIHGLLVTAQSMLPLSSCLANVLPG-RSVIVPDLLGFDFGHSDTRKEATTDRLTTWEAQAERIMF---DVVAHSYGGYVATTLARMRPDLVRRLSLLCPAG 327
            P ++ +HG   +A+S   L + L N L   R +I  DL GF       +  +  D  +      E +     D+V HS+GG +AT L   RPDLVR+++ L PAG
Sbjct:   29 PVILFLHGWGGSAESFQTLMTELNNQLSTHRHLIALDLPGFGESAPPLQAWSVADYSSCVVKYIEALSIGQVDLVVHSFGGRIATKLLNDRPDLVRKIAYLAPAG 133          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A1J0PD62_9SYNE (Alpha/beta hydrolase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1J0PD62_9SYNE)

HSP 1 Score: 50.4 bits (119), Expect = 9.440e-5
Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 1
Query:   28 PVIVIHGLLVTAQSMLPLSSCLANVLPGRS-VIVPDLLGFDFG-------HSDTRKEATTDRLTTWEAQAERIMFDVVAHSYGGYVATTLARMRPDLVRRLSLLCPAG 327
            P++++HG      S L     LA +L GR+ + +PDL GF F        +S     A  D +    A  +     V+  S GG VA  LAR RP+ +RRL LL PAG
Sbjct:   48 PLLLLHGF----DSSLLEFRRLAPLLAGRAQLFIPDLFGFGFSPRCRDGPYSPAGVLAHLDAMLGAIAGLDARPVGVIGASMGGAVAVELARRRPERIRRLLLLAPAG 151          
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Match: A0A5C4LX06_9PSEU (Alpha/beta hydrolase n=1 Tax=Amycolatopsis alkalitolerans TaxID=2547244 RepID=A0A5C4LX06_9PSEU)

HSP 1 Score: 50.4 bits (119), Expect = 9.640e-5
Identity = 40/124 (32.26%), Postives = 57/124 (45.97%), Query Frame = 1
Query:   31 VIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGF-DFGHSDTRKEATTDRLTTWEAQAERI-----MFDVVAHSYGGYVATTLARMRPDLVRRLSLL----CPAGHGRYRIMRSVAGAVY 372
            V+++HGL  T   +      +A  LPGR V++PDL GF D G    R+           A  ER+        ++ HS+G  VA  +A   P+LV RL L+     PA  G   +M  +  A Y
Sbjct:   36 VLMVHGLRGTHHGL----ELIAEALPGRRVVIPDLPGFGDSGPLAGRRHDVDGYAHAVVALIERLGGRTRPVVLLGHSFGSVVAARVASSAPELVHRLVLVNPIATPALRGPRVVMSGLTSAYY 155          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68320.16440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5A8D566_CAFRO1.470e-2035.80AB hydrolase-1 domain-containing protein n=3 Tax=C... [more]
UPI000412132D8.750e-737.50alpha/beta hydrolase n=1 Tax=Inquilinus limosus Ta... [more]
A0A0F6YM20_9DELT2.200e-634.82Putative hydrolase n=2 Tax=Sandaracinus amylolytic... [more]
UPI001C3D77F25.340e-640.95alpha/beta fold hydrolase n=1 Tax=Miltoncostaea oc... [more]
A0A839YKM8_9RHOB6.830e-635.45Dihydrolipoyllysine-residue acetyltransferase n=1 ... [more]
A0A0F6YNJ3_9DELT2.040e-533.33Putative hydrolase n=3 Tax=Sandaracinus amylolytic... [more]
UPI0006793B4E2.810e-534.91alpha/beta fold hydrolase n=1 Tax=Acidobacterium a... [more]
A0A2M7H4Q1_9BACT3.450e-534.29AB hydrolase-1 domain-containing protein n=1 Tax=C... [more]
A0A1J0PD62_9SYNE9.440e-536.11Alpha/beta hydrolase n=3 Tax=unclassified Synechoc... [more]
A0A5C4LX06_9PSEU9.640e-532.26Alpha/beta hydrolase n=1 Tax=Amycolatopsis alkalit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68320contigM-pyrifera_M_contig68320:110..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size372
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68320.16440.1prot_M-pyrifera_M_contig68320.16440.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68320 110..589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.2185462-CDS-M-pyrifera_M_contig68320:109..2681622816574.2185462-CDS-M-pyrifera_M_contig68320:109..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68320 110..268 -
1692278055.1120543-CDS-M-pyrifera_M_contig68320:109..2681692278055.1120543-CDS-M-pyrifera_M_contig68320:109..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68320 110..268 -
1622816574.2314644-CDS-M-pyrifera_M_contig68320:388..5891622816574.2314644-CDS-M-pyrifera_M_contig68320:388..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68320 389..589 -
1692278055.131493-CDS-M-pyrifera_M_contig68320:388..5891692278055.131493-CDS-M-pyrifera_M_contig68320:388..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68320 389..589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.2428575-UTR-M-pyrifera_M_contig68320:589..6011622816574.2428575-UTR-M-pyrifera_M_contig68320:589..601Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68320 590..601 -
1692278055.144868-UTR-M-pyrifera_M_contig68320:589..6011692278055.144868-UTR-M-pyrifera_M_contig68320:589..601Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68320 590..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68320.16440.1

>prot_M-pyrifera_M_contig68320.16440.1 ID=prot_M-pyrifera_M_contig68320.16440.1|Name=mRNA_M-pyrifera_M_contig68320.16440.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MQRLPPVIVIHGLLVTAQSMLPLSSCLANVLPGRSVIVPDLLGFDFGHSD
TRKEATTDRLTTWEAQAERIMFDVVAHSYGGYVATTLARMRPDLVRRLSL
LCPAGHGRYRIMRSVAGAVY
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mRNA from alignment at M-pyrifera_M_contig68320:110..601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68320.16440.1 ID=mRNA_M-pyrifera_M_contig68320.16440.1|Name=mRNA_M-pyrifera_M_contig68320.16440.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig68320:110..601- (Macrocystis pyrifera P11B4 male)
GGTGGGAAGAGGATGCAACGACTTCCTCCGGTTATCGTGATTCATGGTTT GTTGGTAACTGCACAATCCATGCTACCTTTGTCAAGTTGTCTGGCAAATG TATTGCCTGGAAGGAGTGTGATTGTACCAGACTTGTTGGGGTTTGATTTT GGTCACTCTGATACCAGGAAAGAAGCTACCACTGATCGACTCACAACTTG GGAAGCACAAGCTGTCGCTGTTGCTGCTCTGCTTGCAAAACTCTCGACAG ATTCCTCTTCCACAGCCCCACCCTCCTCCTCCTCCTCCTCCTCCTCCTCA TCTACTTCTCCTCTTTCTTCTCGTGATAGTGAGGAGAGGATAATGTTTGA TGTTGTAGCTCATTCTTATGGCGGATATGTGGCAACGACTTTGGCAAGGA TGCGACCAGATTTAGTGCGACGATTGAGTTTGTTGTGCCCGGCTGGACAT GGCCGTTATCGAATTATGCGATCTGTGGCTGGTGCAGTGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68320:110..601-

>mRNA_M-pyrifera_M_contig68320.16440.1 ID=mRNA_M-pyrifera_M_contig68320.16440.1|Name=mRNA_M-pyrifera_M_contig68320.16440.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig68320:110..601- (Macrocystis pyrifera P11B4 male)
ATGCAACGACTTCCTCCGGTTATCGTGATTCATGGTTTGTTGGTAACTGC
ACAATCCATGCTACCTTTGTCAAGTTGTCTGGCAAATGTATTGCCTGGAA
GGAGTGTGATTGTACCAGACTTGTTGGGGTTTGATTTTGGTCACTCTGAT
ACCAGGAAAGAAGCTACCACTGATCGACTCACAACTTGGGAAGCACAAGC
TATGCAACGACTTCCTCCGGTTATCGTGATTCATGGTTTGTTGGTAACTG
CACAATCCATGCTACCTTTGTCAAGTTGTCTGGCAAATGTATTGCCTGGA
AGGAGTGTGATTGTACCAGACTTGTTGGGGTTTGATTTTGGTCACTCTGA
TACCAGGAAAGAAGCTACCACTGATCGACTCACAACTTGGGAAGCACAAG
CTGAGAGGATAATGTTTGATGTTGTAGCTCATTCTTATGGCGGATATGTG
GCAACGACTTTGGCAAGGATGCGACCAGATTTAGTGCGACGATTGAGTTT
GTTGTGCCCGGCTGGACATGGCCGTTATCGAATTATGCGATCTGTGGCTG
GTGCAGTGTATGAGAGGATAATGTTTGATGTTGTAGCTCATTCTTATGGC
GGATATGTGGCAACGACTTTGGCAAGGATGCGACCAGATTTAGTGCGACG
ATTGAGTTTGTTGTGCCCGGCTGGACATGGCCGTTATCGAATTATGCGAT
CTGTGGCTGGTGCAGTGTAT
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