mRNA_M-pyrifera_M_contig68292.16437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68292.16437.1
Unique NamemRNA_M-pyrifera_M_contig68292.16437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig68292.16437.1 vs. uniprot
Match: A0A8H7RP11_9FUNG (3'-5' exonuclease domain-containing protein n=2 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RP11_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-13
Identity = 52/215 (24.19%), Postives = 90/215 (41.86%), Query Frame = 1 
Query:   28 DPQRRTVYGEHCNYELLGFQHKCTACRETQGKGKNATTYKFVPWHPEVLRQLPRDLLMLFPAIILRRSAVDKRIVTPIEQTVVRGVGFKGVADDLRENHLLYYHEMEVRYYF-RLARKRAQGQASVVPDENEKLRNPLVFGKFGDPLGYNGKTPSASLLARVWLVVFEGKEPYYHRHAQRVDGQNAGGDESHKMTKSI-RVTDDKVFHGVYTMVN 666
            DP  R V   H  + ++ +++ C  C+ T G               ++L+QLP  L + FPAI+  R A+   ++  +   +  G+G     + L+E H   +  + ++Y    L RK  Q       + N        F  F D  GY G  PS +    V+  + +   P+  +    V G+   GD + K  K I ++ +   F  +YT+ N
Sbjct:  215 DPCARRVVDMHRCFYIISYRYICPKCKTTIGSSDE-----------KILKQLPDQLSIEFPAILTHRCAISNNLIDILRPCIQHGMGIANFHEMLQELHTKRHTILHMKYTLAHLYRKETQQTLFESWNNNNNKNKYHEFSTFDDAQGYGGYIPSVTYFRLVYTAILDVLRPFMDKQMTAVGGEILKGDHTFKFIKKIAKMGNQPTFGALYTICN 418
[Close]
BLAST of mRNA_M-pyrifera_M_contig68292.16437.1 vs. uniprot
Match: UPI0019557E9F (uncharacterized protein LOC120465295 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019557E9F)

HSP 1 Score: 56.6 bits (135), Expect = 9.150e-6
Identity = 57/213 (26.76%), Postives = 85/213 (39.91%), Query Frame = 1 
Query:   22 GWDPQRRTVYGEHCNYELLGFQHKCTAC----RETQGKGKNATT----------YKFVPWHPEVLRQLPRDLLMLFPAIILRRSAVDKRIVTPIEQTVVRGVGFKGVADDLRENHLLYYHEMEVRYYFRLARKRAQGQASVVPDENEKLRNPLVFGKFGDPLGYNGKTPSASLLARVWLVVFEGKEPYYHRHAQRVDGQNAGGDESHKMTKSI 618
            G+    R V G   NY LL  + KC+ C    RE      +A +          Y ++   P++L  L   +  +FPAI+  + A+DK +VT +   V   V    V   L++ H  +Y E    Y   L      G AS    +   L      G +  PL      PSA +L R  +++   K P Y      V G+    D + K+ K I
Sbjct:  420 GFGSYARQVCGMKYNYTLLTEKLKCSHCEKMRREVSKTHSDADSEDEDSHHVQQYIWLAHSPKILMNLAPAIRSIFPAILCGKRAIDKGVVTLLNDRV-NSVSMSKVQRLLQQGHDEWYVERRDLYQTLLYEAHTAGSAS---SQKSVLSFVKAAGTYTPPLPRT-PLPSARVLRRAHMIMEMEKMPVYRASILSVTGEILCIDGTKKVLKKI 627
[Close]
BLAST of mRNA_M-pyrifera_M_contig68292.16437.1 vs. uniprot
Match: A0A7J6BXH7_9TELE (Uncharacterized protein n=1 Tax=Onychostoma macrolepis TaxID=369639 RepID=A0A7J6BXH7_9TELE)

HSP 1 Score: 56.6 bits (135), Expect = 9.750e-6
Identity = 51/212 (24.06%), Postives = 87/212 (41.04%), Query Frame = 1 
Query:    7 QVVSDGWDPQRRTVYGEHCNYELLGFQHKCTACRETQGKGKNATTYKFVPWHPEVLRQLPRDLLMLFPAIILRRSAVDKRIVTPIEQTVVRGVGFKGVADDLRENHLLYYHEMEVRYYFRL-----ARKRAQGQASVVPDENEKLRNPLVFGKFGDPLGYNGKTPSASLLARVWLVVFEGKEPYYHRHAQRVDGQNAGGDESHKMTKSIRVT 627
            QV S G   + R + G    Y L   +  C  C++           K+   +P+ L +LP+    L PA++  + A+ K ++  +  T   G     +A+ + E   L Y    + Y         A     GQ S+     +K + P+ FG++ DP G+NG   SA  L    L  ++ +E    +  Q   GQ    D + K+ + +  T
Sbjct:  462 QVTSAGVG-RPRVIAGITGQYYLFSSRLCCKVCKK-----------KWYTDNPQWLEKLPKRFTNLLPAVLTYKKAICKSLLDELRHT---GKAPTDMANQVMEMMHLKYERAHLAYLLSCQNIIDAEAGKYGQKSITGFLRKKTQ-PVPFGEYDDPSGWNGIAVSAHYLTDCLLYEYQRQEGAIKKLLQGTFGQAFRSDHTRKVARKVTFT 657
[Close]
BLAST of mRNA_M-pyrifera_M_contig68292.16437.1 vs. uniprot
Match: UPI001955D8E4 (uncharacterized protein LOC120492454 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955D8E4)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-5
Identity = 57/213 (26.76%), Postives = 83/213 (38.97%), Query Frame = 1 
Query:   22 GWDPQRRTVYGEHCNYELLGFQHKCTAC---RETQGKGKN-----------ATTYKFVPWHPEVLRQLPRDLLMLFPAIILRRSAVDKRIVTPIEQTVVRGVGFKGVADDLRENHLLYYHEMEVRYYFRLARKRAQGQASVVPDENEKLRNPLVFGKFGDPLGYNGKTPSASLLARVWLVVFEGKEPYYHRHAQRVDGQNAGGDESHKMTKSI 618
            G+    R V G   NY LL  + KC+ C   R    K  N              Y ++   P++L  L   +  +FPAI+  + A+DK +VT +   V   V    V   L++ H  +Y E    Y   L      G AS    +   L      G +  PL      PSA +L R  +++   K P Y      V G+    D + K+ K I
Sbjct:  419 GFGSYARQVCGMKYNYTLLTEKLKCSHCEKMRRAVSKTHNDADSEDEDSHHVQQYIWLAHSPKILMNLAPAIRSMFPAILCGKRAIDKGVVTLLNDRV-NSVSMNKVQRLLQQGHDEWYVERRDLYQTLLYEAHTAGSAS---SQKSILSFVKAAGTYTPPLPRT-PLPSARVLRRAHMIMEMEKMPVYRASILSVTGEILCIDGTKKVLKKI 626
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68292.16437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8H7RP11_9FUNG1.400e-1324.193'-5' exonuclease domain-containing protein n=2 Ta... [more]
UPI0019557E9F9.150e-626.76uncharacterized protein LOC120465295 n=1 Tax=Pimep... [more]
A0A7J6BXH7_9TELE9.750e-624.06Uncharacterized protein n=1 Tax=Onychostoma macrol... [more]
UPI001955D8E41.800e-526.76uncharacterized protein LOC120492454 n=1 Tax=Pimep... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68292contigM-pyrifera_M_contig68292:2..1106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score83.2
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog5341.XP_007332403.1
Hectar predicted targeting categoryother localisation
EggNOG OGs28NI2@1,2QV3M@2759,39S28@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons3
Model size666
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68292.16437.1prot_M-pyrifera_M_contig68292.16437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68292 2..1106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816573.9365578-CDS-M-pyrifera_M_contig68292:1..3141622816573.9365578-CDS-M-pyrifera_M_contig68292:1..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68292 2..314 -
1692278054.939818-CDS-M-pyrifera_M_contig68292:1..3141692278054.939818-CDS-M-pyrifera_M_contig68292:1..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68292 2..314 -
1622816573.9496193-CDS-M-pyrifera_M_contig68292:509..7221622816573.9496193-CDS-M-pyrifera_M_contig68292:509..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68292 510..722 -
1692278054.9525306-CDS-M-pyrifera_M_contig68292:509..7221692278054.9525306-CDS-M-pyrifera_M_contig68292:509..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68292 510..722 -
1622816573.9627397-CDS-M-pyrifera_M_contig68292:966..11061622816573.9627397-CDS-M-pyrifera_M_contig68292:966..1106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68292 967..1106 -
1692278054.9638715-CDS-M-pyrifera_M_contig68292:966..11061692278054.9638715-CDS-M-pyrifera_M_contig68292:966..1106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68292 967..1106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68292.16437.1

>prot_M-pyrifera_M_contig68292.16437.1 ID=prot_M-pyrifera_M_contig68292.16437.1|Name=mRNA_M-pyrifera_M_contig68292.16437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
MSQVVSDGWDPQRRTVYGEHCNYELLGFQHKCTACRETQGKGKNATTYKF
VPWHPEVLRQLPRDLLMLFPAIILRRSAVDKRIVTPIEQTVVRGVGFKGV
ADDLRENHLLYYHEMEVRYYFRLARKRAQGQASVVPDENEKLRNPLVFGK
FGDPLGYNGKTPSASLLARVWLVVFEGKEPYYHRHAQRVDGQNAGGDESH
KMTKSIRVTDDKVFHGVYTMVN
back to top

mRNA from alignment at M-pyrifera_M_contig68292:2..1106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68292.16437.1 ID=mRNA_M-pyrifera_M_contig68292.16437.1|Name=mRNA_M-pyrifera_M_contig68292.16437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1105bp|location=Sequence derived from alignment at M-pyrifera_M_contig68292:2..1106- (Macrocystis pyrifera P11B4 male)
ATGTCTCAGGTGGTCAGCGATGGATGGGATCCGCAACGTCGTACCGTCTA
CGGGGAGCATTGCAACTACGAGCTCCTAGGATTCCAACACAAGTGCACTG
CTTGCAGAGAAACGCAGGGCAAGGGAAAGAACGCCACGACGTCAAGGTGA
GGTTGTTTGAAGACGGGGCAGATGGCGTGGGTGTGTGGTTCGTTGATAGC
TCATTGACTTTCGAGTGCTGTATTTTGCCCCTCAAGAGACGTGATGCGGG
TCACAGTAGACAACTGTAGTAGGGTTTAGTCTATGTATGAATAGTACACG
TAAGAGTAGTACCTTAATTCTTTATCCTCGTCCCCACCCCACGTCACCAC
GTCGTGTGCTGTCACACGGTCTTGTTTTCCCCAGCTACAAGTTCGTGCCA
TGGCATCCAGAAGTTCTTCGCCAGCTTCCTCGTGACCTGCTGATGCTGTT
CCCCGCCATTATTTTACGGCGGTCTGCCGTAGATAAGAGGATCGTCACGC
CTATCGAGCAGACTGTCGTGCGCGGTGTGGGGTTCAAAGGCGTGGCGGAC
GACCTTCGCGAGAACCATCTCTTGTATTACCACGAGATGGAGGTGCGGTG
AGTGGAACTTTTGGGTTGCATATGCTCTGCGCGGTAGTAAGCTCAAGCGG
CAACCTTCATGTAATGTTTTATCTTCGAGTCCATGCCCACCCCTTCAGTG
AACAGTATGCATTCATGAGATCGCCTTCGCCTTGTTAATGTCCTCCATCT
AGCTCATGTGTTCGTACTGTTGCGGTGAAATGTATCGTGCAGGTACTATT
TCCGGCTGGCGAGGAAGCGAGCGCAAGGGCAGGCCTCCGTGGTGCCGGAC
GAAAACGAGAAACTGCGGAACCCTCTTGTCTTTGGAAAATTCGGCGACCC
TTTGGGTTACAACGGCAAGACTCCTAGCGCGAGCCTCCTCGCCCGCGTGT
GGCTCGTCGTGTTTGAGGGAAAGGAGCCGTATTATCATCGACATGCTCAG
CGGGTGGATGGTCAAAATGCCGGTGGGGACGAGTCTCACAAGATGACGAA
ATCGATCAGAGTCACAGACGACAAGGTTTTCCACGGAGTGTACACCATGG
TGAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68292:2..1106-

>mRNA_M-pyrifera_M_contig68292.16437.1 ID=mRNA_M-pyrifera_M_contig68292.16437.1|Name=mRNA_M-pyrifera_M_contig68292.16437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig68292:2..1106- (Macrocystis pyrifera P11B4 male)
ATGTCTCAGGTGGTCAGCGATGGATGGGATCCGCAACGTCGTACCGTCTA
CGGGGAGCATTGCAACTACGAGCTCCTAGGATTCCAACACAAGTGCACTG
CTTGCAGAGAAACGCAGGGCAAGGGAAAGAACGCCACGACATGTCTCAGG
TGGTCAGCGATGGATGGGATCCGCAACGTCGTACCGTCTACGGGGAGCAT
TGCAACTACGAGCTCCTAGGATTCCAACACAAGTGCACTGCTTGCAGAGA
AACGCAGGGCAAGGGAAAGAACGCCACGACCTACAAGTTCGTGCCATGGC
ATCCAGAAGTTCTTCGCCAGCTTCCTCGTGACCTGCTGATGCTGTTCCCC
GCCATTATTTTACGGCGGTCTGCCGTAGATAAGAGGATCGTCACGCCTAT
CGAGCAGACTGTCGTGCGCGGTGTGGGGTTCAAAGGCGTGGCGGACGACC
TTCGCGAGAACCATCTCTTGTATTACCACGAGATGGAGGTGCGCTACAAG
TTCGTGCCATGGCATCCAGAAGTTCTTCGCCAGCTTCCTCGTGACCTGCT
GATGCTGTTCCCCGCCATTATTTTACGGCGGTCTGCCGTAGATAAGAGGA
TCGTCACGCCTATCGAGCAGACTGTCGTGCGCGGTGTGGGGTTCAAAGGC
GTGGCGGACGACCTTCGCGAGAACCATCTCTTGTATTACCACGAGATGGA
GGTGCGGTACTATTTCCGGCTGGCGAGGAAGCGAGCGCAAGGGCAGGCCT
CCGTGGTGCCGGACGAAAACGAGAAACTGCGGAACCCTCTTGTCTTTGGA
AAATTCGGCGACCCTTTGGGTTACAACGGCAAGACTCCTAGCGCGAGCCT
CCTCGCCCGCGTGTGGCTCGTCGTGTTTGAGGGAAAGGAGCCGTATTATC
ATCGACATGCTCAGCGGGTGGATGGTCAAAATGCCGGTGGGGACGAGTCT
CACAAGATGACGAAATCGATCAGAGTCACAGACGACAAGGTTTTCCACGG
AGTGTACACCATGGTGAACGTACTATTTCCGGCTGGCGAGGAAGCGAGCG
CAAGGGCAGGCCTCCGTGGTGCCGGACGAAAACGAGAAACTGCGGAACCC
TCTTGTCTTTGGAAAATTCGGCGACCCTTTGGGTTACAACGGCAAGACTC
CTAGCGCGAGCCTCCTCGCCCGCGTGTGGCTCGTCGTGTTTGAGGGAAAG
GAGCCGTATTATCATCGACATGCTCAGCGGGTGGATGGTCAAAATGCCGG
TGGGGACGAGTCTCACAAGATGACGAAATCGATCAGAGTCACAGACGACA
AGGTTTTCCACGGAGTGTACACCATGGTGAAC
back to top