mRNA_M-pyrifera_M_contig68186.16423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68186.16423.1
Unique NamemRNA_M-pyrifera_M_contig68186.16423.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68186.16423.1 vs. uniprot
Match: A0A1Z5R9K0_SORBI (Uncharacterized protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1Z5R9K0_SORBI)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-6
Identity = 44/133 (33.08%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:   25 VRVPESTVVRDYTALLRDGIGADVKIDACSDEYEGDSAQLFPAHSTILRTRSSHLREALESSLAEGVGGLVMLPDASASAAARMLEWIYTDSMQP--DISPTNATA----LLVAGAAAGEERLVRRCEGVLVK 405
            + VP S +V D   LL  G GAD+       E +G+S   FPAH T+L +RS   R  L   + E     +++ D   +    +L +IYTD++ P  D+S  ++      LLVA      ERL   C  +L K
Sbjct:  157 IDVPPSDLVADMGRLLDQGDGADITF-----EVQGES---FPAHRTVLASRSQVFRAELHGQMKERSVDRIVISDMQPAVFRALLRFIYTDALPPMDDLSKDDSLEITRHLLVAADRYAMERLKLICAQILSK 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68186.16423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Z5R9K0_SORBI2.530e-633.08Uncharacterized protein n=2 Tax=Sorghum bicolor Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68186contigM-pyrifera_M_contig68186:3..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog4565.Traes_5AL_1A1525551.1
KEGG koko:K10523
KEGG Pathwayko04340,ko04341,map04340,map04341
KEGG ModuleM00384
Hectar predicted targeting categoryother localisation
EggNOG free text desc.meprin and TRAF homology
EggNOG OGs37HKI@33090,3GDYG@35493,3IG7E@38820,3M330@4447,KOG1987@1,KOG1987@2759
COG Functional cat.D
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.5911307-CDS-M-pyrifera_M_contig68186:2..4071622816572.5911307-CDS-M-pyrifera_M_contig68186:2..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68186 3..407 -
1692278054.1045856-CDS-M-pyrifera_M_contig68186:2..4071692278054.1045856-CDS-M-pyrifera_M_contig68186:2..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68186 3..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68186.16423.1prot_M-pyrifera_M_contig68186.16423.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68186 3..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68186.16423.1

>prot_M-pyrifera_M_contig68186.16423.1 ID=prot_M-pyrifera_M_contig68186.16423.1|Name=mRNA_M-pyrifera_M_contig68186.16423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
PGVDPNVAVRVPESTVVRDYTALLRDGIGADVKIDACSDEYEGDSAQLFP
AHSTILRTRSSHLREALESSLAEGVGGLVMLPDASASAAARMLEWIYTDS
MQPDISPTNATALLVAGAAAGEERLVRRCEGVLVK
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mRNA from alignment at M-pyrifera_M_contig68186:3..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68186.16423.1 ID=mRNA_M-pyrifera_M_contig68186.16423.1|Name=mRNA_M-pyrifera_M_contig68186.16423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig68186:3..407- (Macrocystis pyrifera P11B4 male)
CCTGGTGTGGATCCGAATGTTGCAGTGCGTGTTCCAGAGTCGACAGTGGT
GCGTGATTACACAGCTTTGTTGCGCGATGGAATTGGTGCAGATGTGAAGA
TTGATGCTTGTAGTGATGAGTATGAAGGTGATTCAGCTCAACTCTTCCCT
GCACACTCCACAATTCTTCGTACTCGTTCTTCACATCTCCGTGAAGCTCT
AGAATCATCCCTTGCTGAAGGTGTAGGTGGTCTTGTGATGTTACCTGATG
CTTCTGCAAGTGCTGCAGCAAGAATGTTGGAGTGGATCTACACTGACTCA
ATGCAACCTGATATTTCCCCAACAAATGCAACTGCACTACTCGTAGCAGG
TGCAGCTGCAGGAGAAGAGCGACTGGTGCGCCGTTGTGAAGGTGTCTTAG
TGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68186:3..407-

>mRNA_M-pyrifera_M_contig68186.16423.1 ID=mRNA_M-pyrifera_M_contig68186.16423.1|Name=mRNA_M-pyrifera_M_contig68186.16423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig68186:3..407- (Macrocystis pyrifera P11B4 male)
CCTGGTGTGGATCCGAATGTTGCAGTGCGTGTTCCAGAGTCGACAGTGGT
GCGTGATTACACAGCTTTGTTGCGCGATGGAATTGGTGCAGATGTGAAGA
TTGATGCTTGTAGTGATGAGTATGAAGGTGATTCAGCTCAACTCTTCCCT
GCACACTCCACAATTCTTCGTACTCGTTCTTCACATCTCCGTGAAGCTCT
AGAATCATCCCTTGCTGAAGGTGTAGGTGGTCTTGTGATGTTACCTGATG
CTTCTGCAAGTGCTGCAGCAAGAATGTTGGAGTGGATCTACACTGACTCA
ATGCAACCTGATATTTCCCCAACAAATGCAACTGCACTACTCGTAGCAGG
TGCAGCTGCAGGAGAAGAGCGACTGGTGCGCCGTTGTGAAGGTGTCTTAG
TGAAGCCTGGTGTGGATCCGAATGTTGCAGTGCGTGTTCCAGAGTCGACA
GTGGTGCGTGATTACACAGCTTTGTTGCGCGATGGAATTGGTGCAGATGT
GAAGATTGATGCTTGTAGTGATGAGTATGAAGGTGATTCAGCTCAACTCT
TCCCTGCACACTCCACAATTCTTCGTACTCGTTCTTCACATCTCCGTGAA
GCTCTAGAATCATCCCTTGCTGAAGGTGTAGGTGGTCTTGTGATGTTACC
TGATGCTTCTGCAAGTGCTGCAGCAAGAATGTTGGAGTGGATCTACACTG
ACTCAATGCAACCTGATATTTCCCCAACAAATGCAACTGCACTACTCGTA
GCAGGTGCAGCTGCAGGAGAAGAGCGACTGGTGCGCCGTTGTGAAGGTGT
CTTAGTGAAG
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