mRNA_M-pyrifera_M_contig68153.16419.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68153.16419.1
Unique NamemRNA_M-pyrifera_M_contig68153.16419.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A7S1CC45_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC45_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.990e-38
Identity = 63/115 (54.78%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   58 RGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATASKYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLK 402
            R +H+S+  EM P+ +G+GVA+ A+S +Y++ A+EK+ A  PK P A    +YKG F+ +M R EAA ILG+RESA  ++I+ERHR+LL+LNHPDTGGST++ATK+NEAK+ LL+
Sbjct:   81 RSIHTSQAAEMWPLALGLGVAVTAISAKYMIVAWEKYQAM-PKRPKAKFRNFYKGGFKDDMDRREAALILGVRESASKERIKERHRQLLMLNHPDTGGSTFIATKVNEAKEMLLR 194          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A812P7Y6_9DINO (TIM14-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812P7Y6_9DINO)

HSP 1 Score: 125 bits (315), Expect = 3.910e-34
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   19 RAVGAVGIMEGHSRGLHSSRVVEMNPVGIG-MGVAIGALSLRYVVSAYEKWDATRPKGPVATASKYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLL 399
            +A  A  +    +R LH+S     N + +G   VA GA+ +RY + AYE+W +T P         +YKG FE EMS SEAAKILGIRESA  D +R+ HRKL+ILNHPD GGSTY+A K+NEAKDKL+
Sbjct:   32 KASAASALSAQPNRALHASASAGNNAIIVGSFAVAAGAIGMRYAMQAYEQW-STDPARKHNAMKWHYKGDFEDEMSTSEAAKILGIRESASVDAVRKAHRKLMILNHPDAGGSTYLAGKVNEAKDKLM 158          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A7R9TC51_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TC51_9VIRI)

HSP 1 Score: 123 bits (309), Expect = 1.250e-33
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   64 LHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATASKYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLK 402
            L + R  E  P+ +G+GVA GAL LR  V AY KW A+        + +YY+G F+ +M+R EAA+ILGIRES+ PDK++E HR++++ NHPD GGS YVA+KINEAKD LLK
Sbjct:   21 LRAQRSREYTPLVVGVGVAGGALLLREAVEAYGKWAAS------PASKRYYEGGFQEKMTRREAAQILGIRESSKPDKVKETHRRVMLANHPDAGGSDYVASKINEAKDVLLK 127          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: K3X542_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X542_GLOUD)

HSP 1 Score: 124 bits (311), Expect = 1.250e-33
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   58 RGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVA--TASKYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKGN 408
            RG HS+   +   +  G+GVA  A+  +Y+V AYE + A RPK  V+  T   +Y GPFE +M+R EAA ILG+RESA  ++IR  HRKLLILNHPDTGGST++ATKIN+AK+ LL G+
Sbjct:   42 RGFHSTPQRDSAILIAGLGVAGAAMGAKYLVQAYEAYKA-RPKSEVSAWTTRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFIATKINQAKELLLGGS 159          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A6G0WCE7_9STRA (J domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCE7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.460e-33
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   55 SRGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATAS-------KYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKG 405
            +R LH+SR  +   V   +GVA  AL  +Y++ AYE + A +PK    ++S        +Y GPFE +M+R EAA ILG+RESA PD+IR  HRKLLI NHPDTGGST+++TKINEAK+ LL G
Sbjct:   35 NRYLHASRRQDSAIVVGSLGVAAAALGGKYLLEAYEGYKANKPKTEANSSSVFNMSYRNFYDGPFEEKMTRREAALILGVRESASPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKELLLGG 158          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A485LR37_9STRA (Aste57867_22958 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR37_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.190e-33
Identity = 66/123 (53.66%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   58 RGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATAS-------KYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKG 405
            R LH+S   +   V   +GVA  AL  +Y+V AYE + A +PK   A++S        +Y GPFE +M+R EAA ILG+RESA PD+IR  HRKLLI NHPDTGGST+++TKINEAK+ LL G
Sbjct:   38 RFLHASHRQDSALVVGSLGVAAAALGGKYLVEAYEGYKANKPKTEGASSSMFNMNYRNFYDGPFEDKMTRREAALILGVRESASPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKELLLGG 160          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A024GNN0_9STRA (J domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNN0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.170e-32
Identity = 63/119 (52.94%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   55 SRGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATAS--KYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKG 405
            SR +H +R  +   +  G+G+A  A+ ++YV+ AYE +   RPK P  + +   +Y+GPFE  M+R EAA ILG+RESA P +I+  HRKLLILNHPDTGGSTY+A+KINEAK  LL G
Sbjct:   34 SRHIHMTRQQDSVFLLGGLGIAASAMGIKYVIKAYEAYKL-RPKTPSLSWNYKSFYEGPFEERMTRREAALILGVRESASPKRIQNAHRKLLILNHPDTGGSTYLASKINEAKQLLLSG 151          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A1V9Z1B4_9STRA (J domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1B4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.200e-32
Identity = 64/158 (40.51%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    1 LKSVFARAVGAVGIMEGHSRGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATAS-----------------------KYYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKG 405
            L     R+V  + ++   SR LH++R  +   +  G GVA+ A+S++Y++ +Y+++ A +   P   A                         +Y GPFE +M+R EAA ILG+RE+A PD+IR  HRKLLI NHPDTGGST+++TKINEAK+ LL G
Sbjct:    8 LSRALPRSVAPLQLVPQQSRYLHATRPQDSALIVGGAGVAVAAMSVKYLLQSYQQYQAAKAAAPAEEAKGKSDAKGTSSERGSFFNFNMSYRNFYDGPFEDKMTRREAALILGVRENANPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKEMLLNG 165          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: W4FRD9_9STRA (J domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FRD9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.570e-32
Identity = 65/145 (44.83%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    7 SVFARAVGAVGIMEGHSRGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATASK------------YYKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKG 405
            SV  R +  + +     R LH++R  +   V   +GVA  AL  +Y++ AYE + A +   P  T +             +Y GPFE +M+R EAA ILG+RESA PD+IR  HRKLLI NHPDTGGST++++KINEAK+ LL G
Sbjct:   19 SVLPRCMPQLQVASQQRRSLHATRSQDNALVVGSLGVAAAALGGKYLLEAYEGYQAKKASSPSGTGASSSSSVFNMSYRNFYDGPFEDKMTRREAALILGVRESASPDRIRNAHRKLLIANHPDTGGSTFLSSKINEAKELLLGG 163          
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Match: A0A225X2M6_9STRA (J domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225X2M6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 8.420e-32
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   58 RGLHSSRVVEMNPVGIGMGVAIGALSLRYVVSAYEKWDATRPKGPVATASKY---YKGPFEAEMSRSEAAKILGIRESAPPDKIRERHRKLLILNHPDTGGSTYVATKINEAKDKLLKG 405
            R  H+S   E + +  G+GVA  ALS +YV+  YE +   RPK    ++ KY   Y GPFE +M+R EAA ILG+RESA  ++IR  HRKLLILNHPDTGGST++ATKIN+AK+ LL G
Sbjct:   42 RAFHASPQRENSLLIGGLGVAGAALSAKYVLQVYEAYK-NRPKSEKTSSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKEMLLGG 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68153.16419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CC45_9STRA8.990e-3854.78Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A812P7Y6_9DINO3.910e-3452.34TIM14-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A7R9TC51_9VIRI1.250e-3353.98Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
K3X542_GLOUD1.250e-3354.62J domain-containing protein n=1 Tax=Globisporangiu... [more]
A0A6G0WCE7_9STRA3.460e-3352.42J domain-containing protein n=1 Tax=Aphanomyces eu... [more]
A0A485LR37_9STRA5.190e-3353.66Aste57867_22958 protein n=1 Tax=Aphanomyces stella... [more]
A0A024GNN0_9STRA1.170e-3252.94J domain-containing protein n=1 Tax=Albugo candida... [more]
A0A1V9Z1B4_9STRA1.200e-3240.51J domain-containing protein n=1 Tax=Achlya hypogyn... [more]
W4FRD9_9STRA4.570e-3244.83J domain-containing protein n=4 Tax=Aphanomyces as... [more]
A0A225X2M6_9STRA8.420e-3254.62J domain-containing protein n=3 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68153contigM-pyrifera_M_contig68153:524..934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog42099.EPrPV00000018973
Preferred nameMDJ2
KEGG koko:K09535,ko:K09539
Hectar predicted targeting categoryother localisation
GOsGO:0001405,GO:0001671,GO:0002082,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0006140,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010563,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0030150,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031333,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031975,GO:0032781,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0042325,GO:0042326,GO:0042594,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043457,GO:0043462,GO:0043467,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0045936,GO:0045980,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060589,GO:0060590,GO:0062012,GO:0062014,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090324,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1900542,GO:1900543,GO:1901856,GO:1902956,GO:1902957,GO:1903578,GO:1903579,GO:1905446,GO:1905447,GO:1990542
EggNOG free text desc.Dnaj. Source PGD
EggNOG OGs1MHMB@121069,COG2214@1,KOG0723@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.4250326-CDS-M-pyrifera_M_contig68153:523..9341622816572.4250326-CDS-M-pyrifera_M_contig68153:523..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68153 524..934 -
1692278054.0273783-CDS-M-pyrifera_M_contig68153:523..9341692278054.0273783-CDS-M-pyrifera_M_contig68153:523..934Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68153 524..934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68153.16419.1prot_M-pyrifera_M_contig68153.16419.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68153 524..934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68153.16419.1

>prot_M-pyrifera_M_contig68153.16419.1 ID=prot_M-pyrifera_M_contig68153.16419.1|Name=mRNA_M-pyrifera_M_contig68153.16419.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
LKSVFARAVGAVGIMEGHSRGLHSSRVVEMNPVGIGMGVAIGALSLRYVV
SAYEKWDATRPKGPVATASKYYKGPFEAEMSRSEAAKILGIRESAPPDKI
RERHRKLLILNHPDTGGSTYVATKINEAKDKLLKGN*
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mRNA from alignment at M-pyrifera_M_contig68153:524..934-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68153.16419.1 ID=mRNA_M-pyrifera_M_contig68153.16419.1|Name=mRNA_M-pyrifera_M_contig68153.16419.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig68153:524..934- (Macrocystis pyrifera P11B4 male)
TTGAAATCGGTTTTCGCACGCGCTGTGGGTGCAGTTGGGATCATGGAAGG GCACAGTAGGGGACTTCACAGCAGTAGGGTGGTGGAGATGAACCCGGTTG GAATCGGAATGGGCGTAGCCATTGGAGCGCTGTCTCTTCGCTACGTGGTC TCTGCGTATGAAAAGTGGGATGCGACCAGACCCAAGGGACCTGTTGCTAC TGCGAGTAAATACTACAAAGGCCCCTTTGAAGCGGAGATGAGTCGCTCAG AAGCTGCAAAAATTCTTGGAATTCGAGAATCTGCGCCACCAGACAAGATC AGAGAGCGACACAGGAAACTCCTTATCCTGAACCATCCAGATACCGGAGG AAGTACATACGTTGCCACGAAAATCAACGAGGCCAAAGATAAACTTCTCA AGGGAAATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68153:524..934-

>mRNA_M-pyrifera_M_contig68153.16419.1 ID=mRNA_M-pyrifera_M_contig68153.16419.1|Name=mRNA_M-pyrifera_M_contig68153.16419.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig68153:524..934- (Macrocystis pyrifera P11B4 male)
TTGAAATCGGTTTTCGCACGCGCTGTGGGTGCAGTTGGGATCATGGAAGG
GCACAGTAGGGGACTTCACAGCAGTAGGGTGGTGGAGATGAACCCGGTTG
GAATCGGAATGGGCGTAGCCATTGGAGCGCTGTCTCTTCGCTACGTGGTC
TCTGCGTATGAAAAGTGGGATGCGACCAGACCCAAGGGACCTGTTGCTAC
TGCGAGTAAATACTACAAAGGCCCCTTTGAAGCGGAGATGAGTCGCTCAG
AAGCTGCAAAAATTCTTGGAATTCGAGAATCTGCGCCACCAGACAAGATC
AGAGAGCGACACAGGAAACTCCTTATCCTGAACCATCCAGATACCGGAGG
AAGTACATACGTTGCCACGAAAATCAACGAGGCCAAAGATAAACTTCTCA
AGGGAAATTAGTTGAAATCGGTTTTCGCACGCGCTGTGGGTGCAGTTGGG
ATCATGGAAGGGCACAGTAGGGGACTTCACAGCAGTAGGGTGGTGGAGAT
GAACCCGGTTGGAATCGGAATGGGCGTAGCCATTGGAGCGCTGTCTCTTC
GCTACGTGGTCTCTGCGTATGAAAAGTGGGATGCGACCAGACCCAAGGGA
CCTGTTGCTACTGCGAGTAAATACTACAAAGGCCCCTTTGAAGCGGAGAT
GAGTCGCTCAGAAGCTGCAAAAATTCTTGGAATTCGAGAATCTGCGCCAC
CAGACAAGATCAGAGAGCGACACAGGAAACTCCTTATCCTGAACCATCCA
GATACCGGAGGAAGTACATACGTTGCCACGAAAATCAACGAGGCCAAAGA
TAAACTTCTCAAGGGAAATTAG
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