mRNA_M-pyrifera_M_contig68153.16418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68153.16418.1
Unique NamemRNA_M-pyrifera_M_contig68153.16418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: M5GGU3_DACPD (Ribonucloprotein n=3 Tax=Dacrymycetaceae TaxID=5254 RepID=M5GGU3_DACPD)

HSP 1 Score: 128 bits (322), Expect = 1.470e-36
Identity = 61/87 (70.11%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGIA F+VL  DT+PIEIL+HLPLLCEDKNVPYVFVP K+ALGRACGVSRPVIA +VT  ++  L SQI+ ++ +IE LL+
Sbjct:   40 ATKTLNRGIAEFIVLTADTEPIEILLHLPLLCEDKNVPYVFVPSKIALGRACGVSRPVIAASVTTNEQRELNSQIQTIKNEIEKLLI 126
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: UPI0018D9988F (NHP2-like protein 1 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9988F)

HSP 1 Score: 127 bits (318), Expect = 6.730e-36
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGI+ F+V+A DT+P+EIL+HLPLLCEDKNVPYVFV  K ALGRACGVSRPVIA +VT  + S L +QIEK++ DIE LLL
Sbjct:   44 ATKTLNRGISEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTVNEGSQLKAQIEKIRKDIERLLL 130
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: A0A4P9Y4S6_9FUNG (Ribonucloprotein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y4S6_9FUNG)

HSP 1 Score: 126 bits (317), Expect = 8.480e-36
Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGI+ F+VL  DT+PIEIL+HLPLLCEDKNVPYVFVP K ALGRACGV+RPVIA +VT  + S L  QI +L+TDIE LL+
Sbjct:   40 ATKTLNRGISEFIVLTADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVTRPVIAASVTTNEASDLIPQILQLKTDIEKLLI 126
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: A0A067MSP3_9AGAM (Ribonucloprotein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MSP3_9AGAM)

HSP 1 Score: 126 bits (316), Expect = 1.280e-35
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLL 258
            ATK LNRGIA F++L  DT+PIEILMHLPLLCEDKNVPYVF+P K ALGRACGV+RPVIA +VT  +   LTSQI+ ++ +IE L+
Sbjct:   42 ATKTLNRGIAEFIILTADTEPIEILMHLPLLCEDKNVPYVFIPSKTALGRACGVTRPVIAASVTTNEARELTSQIQTIKNEIEKLM 127
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: A0A835Z1Z7_9STRA (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.760e-35
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGI+ F+V+A D DP+EIL+HLPLLCEDKNVPYVFVP KVALGRACGVSRPVI+ +VT  + S L  QI+ L+  IE LL+
Sbjct:   41 ATKTLNRGISEFIVMAADADPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISASVTTNEASQLKEQIQSLKDQIEQLLI 127
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: M4BL53_HYAAE (Ribonucloprotein n=39 Tax=Oomycota TaxID=4762 RepID=M4BL53_HYAAE)

HSP 1 Score: 125 bits (315), Expect = 1.870e-35
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGI+ F+V+A DT+P+EIL+HLPLLCEDKNVPYVFVP KVALGRACGVSRPVIA ++T+ + S L  QI+ ++  IE LL+
Sbjct:   43 ATKTLNRGISEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVIAASITSNEASQLGPQIQSMREQIEQLLI 129
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: A0A507DJD6_9FUNG (Ribonucloprotein n=2 Tax=Synchytrium TaxID=286114 RepID=A0A507DJD6_9FUNG)

HSP 1 Score: 125 bits (315), Expect = 1.930e-35
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGIA F+V+  DTDP+EIL+HLPLLCEDKNVPYVFVP K ALGRACGV+RPVIA +VT  D S L +QI+ ++ +IE LL+
Sbjct:   44 ATKTLNRGIAEFIVMTADTDPLEILLHLPLLCEDKNVPYVFVPSKQALGRACGVTRPVIAASVTQNDASELKAQIDAIKIEIEKLLI 130
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BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: A0A4P9XGY2_9FUNG (Ribonucloprotein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XGY2_9FUNG)

HSP 1 Score: 125 bits (314), Expect = 2.360e-35
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGI+ F+V+A DTDP+EIL+HLPLLCEDKNVPYVFVP K ALGRACGVSRPV+A +VT+ + S L  QI  ++T IE LL+
Sbjct:   39 ATKTLNRGISEFIVMAADTDPLEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVACSVTSNEASDLKPQILAIKTQIEKLLI 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: A0A1X7VDS0_AMPQE (Ribonucloprotein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VDS0_AMPQE)

HSP 1 Score: 125 bits (314), Expect = 2.430e-35
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATKALNRGIA F+V+A DT+P+EIL+HLPLLCEDKNVPYVFVP K  LGRACGVSRPVIA AVT  + S L  QI  LQ  +E LL+
Sbjct:   40 ATKALNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKATLGRACGVSRPVIACAVTVNEGSQLKPQILSLQQSMEKLLI 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Match: F4P827_BATDJ (Ribonucloprotein n=3 Tax=Batrachochytrium TaxID=100474 RepID=F4P827_BATDJ)

HSP 1 Score: 125 bits (314), Expect = 2.820e-35
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGRACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL 261
            ATK LNRGI+ F+V+A DT+P+EIL+HLPLLCEDKNVPYVFVP K ALGRACGVSRPV+A +VT  D S L  QI+ ++ +IE LL+
Sbjct:   45 ATKTLNRGISEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVAASVTTNDGSELLVQIQAIKNEIEKLLI 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68153.16418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M5GGU3_DACPD1.470e-3670.11Ribonucloprotein n=3 Tax=Dacrymycetaceae TaxID=525... [more]
UPI0018D9988F6.730e-3671.26NHP2-like protein 1 n=1 Tax=Patiria miniata TaxID=... [more]
A0A4P9Y4S6_9FUNG8.480e-3671.26Ribonucloprotein n=1 Tax=Piptocephalis cylindrospo... [more]
A0A067MSP3_9AGAM1.280e-3568.60Ribonucloprotein n=1 Tax=Botryobasidium botryosum ... [more]
A0A835Z1Z7_9STRA1.760e-3568.97Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303... [more]
M4BL53_HYAAE1.870e-3567.82Ribonucloprotein n=39 Tax=Oomycota TaxID=4762 RepI... [more]
A0A507DJD6_9FUNG1.930e-3568.97Ribonucloprotein n=2 Tax=Synchytrium TaxID=286114 ... [more]
A0A4P9XGY2_9FUNG2.360e-3568.97Ribonucloprotein n=1 Tax=Thamnocephalis sphaerospo... [more]
A0A1X7VDS0_AMPQE2.430e-3571.26Ribonucloprotein n=2 Tax=Amphimedon queenslandica ... [more]
F4P827_BATDJ2.820e-3567.82Ribonucloprotein n=3 Tax=Batrachochytrium TaxID=10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68153contigM-pyrifera_M_contig68153:42..305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.8e-28
Seed eggNOG ortholog115417.EPrPW00000020667
Preferred nameNHP2L1
KEGG koko:K12845,ko:K14404
KEGG Pathwayko03008,ko03015,ko03040,ko05164,map03008,map03015,map03040,map05164
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000470,GO:0000491,GO:0000492,GO:0001651,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005690,GO:0005730,GO:0005732,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0007275,GO:0007338,GO:0007399,GO:0007422,GO:0007517,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0019222,GO:0019899,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030532,GO:0030621,GO:0030622,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034250,GO:0034470,GO:0034511,GO:0034512,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045292,GO:0045727,GO:0046483,GO:0046540,GO:0048513,GO:0048518,GO:0048522,GO:0048644,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0060415,GO:0061061,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904,GO:2000112
EggNOG free text desc.13 kDa ribonucleoprotein-associated protein. Source PGD
EggNOG OGs1MH10@121069,COG1358@1,KOG3387@2759
COG Functional cat.AJ
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03019,ko03021,ko03041
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.3894138-CDS-M-pyrifera_M_contig68153:41..3051622816572.3894138-CDS-M-pyrifera_M_contig68153:41..305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68153 42..305 +
1692278054.0143013-CDS-M-pyrifera_M_contig68153:41..3051692278054.0143013-CDS-M-pyrifera_M_contig68153:41..305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68153 42..305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68153.16418.1prot_M-pyrifera_M_contig68153.16418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68153 42..305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68153.16418.1

>prot_M-pyrifera_M_contig68153.16418.1 ID=prot_M-pyrifera_M_contig68153.16418.1|Name=mRNA_M-pyrifera_M_contig68153.16418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
ATKALNRGIAAFVVLAGDTDPIEILMHLPLLCEDKNVPYVFVPHKVALGR
ACGVSRPVIALAVTAGDRSALTSQIEKLQTDIEHLLL*
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mRNA from alignment at M-pyrifera_M_contig68153:42..305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68153.16418.1 ID=mRNA_M-pyrifera_M_contig68153.16418.1|Name=mRNA_M-pyrifera_M_contig68153.16418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig68153:42..305+ (Macrocystis pyrifera P11B4 male)
GCAACAAAGGCGTTGAACCGCGGAATTGCCGCGTTTGTGGTATTGGCCGG
TGACACGGACCCAATCGAGATTTTGATGCACTTGCCACTGTTGTGCGAGG
ACAAGAACGTGCCGTACGTGTTCGTGCCACACAAGGTGGCGCTGGGCCGT
GCCTGCGGCGTCTCTCGCCCAGTCATCGCTCTTGCCGTGACTGCTGGCGA
CCGCTCTGCACTCACCTCCCAGATCGAAAAGCTCCAGACCGACATCGAGC
ACCTCCTCCTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68153:42..305+

>mRNA_M-pyrifera_M_contig68153.16418.1 ID=mRNA_M-pyrifera_M_contig68153.16418.1|Name=mRNA_M-pyrifera_M_contig68153.16418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig68153:42..305+ (Macrocystis pyrifera P11B4 male)
GCAACAAAGGCGTTGAACCGCGGAATTGCCGCGTTTGTGGTATTGGCCGG
TGACACGGACCCAATCGAGATTTTGATGCACTTGCCACTGTTGTGCGAGG
ACAAGAACGTGCCGTACGTGTTCGTGCCACACAAGGTGGCGCTGGGCCGT
GCCTGCGGCGTCTCTCGCCCAGTCATCGCTCTTGCCGTGACTGCTGGCGA
CCGCTCTGCACTCACCTCCCAGATCGAAAAGCTCCAGACCGACATCGAGC
ACCTCCTCCTCTAAGCAACAAAGGCGTTGAACCGCGGAATTGCCGCGTTT
GTGGTATTGGCCGGTGACACGGACCCAATCGAGATTTTGATGCACTTGCC
ACTGTTGTGCGAGGACAAGAACGTGCCGTACGTGTTCGTGCCACACAAGG
TGGCGCTGGGCCGTGCCTGCGGCGTCTCTCGCCCAGTCATCGCTCTTGCC
GTGACTGCTGGCGACCGCTCTGCACTCACCTCCCAGATCGAAAAGCTCCA
GACCGACATCGAGCACCTCCTCCTCTAA
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