mRNA_M-pyrifera_M_contig6811.16413.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6811.16413.1
Unique NamemRNA_M-pyrifera_M_contig6811.16413.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6811.16413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6811contigM-pyrifera_M_contig6811:5176..5550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.1659768-CDS-M-pyrifera_M_contig6811:5175..55501622816572.1659768-CDS-M-pyrifera_M_contig6811:5175..5550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 5176..5550 +
1692278053.9313211-CDS-M-pyrifera_M_contig6811:5175..55501692278053.9313211-CDS-M-pyrifera_M_contig6811:5175..5550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6811 5176..5550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6811.16413.1prot_M-pyrifera_M_contig6811.16413.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6811 5176..5550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6811.16413.1

>prot_M-pyrifera_M_contig6811.16413.1 ID=prot_M-pyrifera_M_contig6811.16413.1|Name=mRNA_M-pyrifera_M_contig6811.16413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MQPLSRAMPPQTTSTSYGNVCALDWPPVQPCLDQATSHPHSKSTETFVSL
TGHPSHPDSYSRPIHCLPVARAKKLHTQKARPIQYSACTKQHHTQVATQA
HPLPAVYSRTAASHPSRLCQSTTSS
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mRNA from alignment at M-pyrifera_M_contig6811:5176..5550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6811.16413.1 ID=mRNA_M-pyrifera_M_contig6811.16413.1|Name=mRNA_M-pyrifera_M_contig6811.16413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig6811:5176..5550+ (Macrocystis pyrifera P11B4 male)
ATGCAACCCTTGTCTCGTGCGATGCCCCCCCAAACCACATCCACTTCGTA
CGGAAACGTTTGCGCGCTCGACTGGCCACCTGTACAGCCTTGCTTGGACC
AAGCAACATCACACCCGCACTCTAAAAGTACCGAAACCTTTGTGAGCTTA
ACTGGTCATCCATCACACCCAGATAGCTACAGTAGGCCAATCCATTGCCT
GCCGGTTGCTCGCGCCAAGAAGCTTCACACCCAGAAGGCTAGACCGATCC
AATACAGTGCTTGCACCAAGCAGCATCACACCCAGGTGGCTACGCAGGCC
CATCCATTGCCTGCCGTTTACTCGCGCACAGCAGCATCACACCCTTCCAG
GCTTTGCCAATCCACAACAAGCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6811:5176..5550+

>mRNA_M-pyrifera_M_contig6811.16413.1 ID=mRNA_M-pyrifera_M_contig6811.16413.1|Name=mRNA_M-pyrifera_M_contig6811.16413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig6811:5176..5550+ (Macrocystis pyrifera P11B4 male)
ATGCAACCCTTGTCTCGTGCGATGCCCCCCCAAACCACATCCACTTCGTA
CGGAAACGTTTGCGCGCTCGACTGGCCACCTGTACAGCCTTGCTTGGACC
AAGCAACATCACACCCGCACTCTAAAAGTACCGAAACCTTTGTGAGCTTA
ACTGGTCATCCATCACACCCAGATAGCTACAGTAGGCCAATCCATTGCCT
GCCGGTTGCTCGCGCCAAGAAGCTTCACACCCAGAAGGCTAGACCGATCC
AATACAGTGCTTGCACCAAGCAGCATCACACCCAGGTGGCTACGCAGGCC
CATCCATTGCCTGCCGTTTACTCGCGCACAGCAGCATCACACCCTTCCAG
GCTTTGCCAATCCACAACAAGCAGCATGCAACCCTTGTCTCGTGCGATGC
CCCCCCAAACCACATCCACTTCGTACGGAAACGTTTGCGCGCTCGACTGG
CCACCTGTACAGCCTTGCTTGGACCAAGCAACATCACACCCGCACTCTAA
AAGTACCGAAACCTTTGTGAGCTTAACTGGTCATCCATCACACCCAGATA
GCTACAGTAGGCCAATCCATTGCCTGCCGGTTGCTCGCGCCAAGAAGCTT
CACACCCAGAAGGCTAGACCGATCCAATACAGTGCTTGCACCAAGCAGCA
TCACACCCAGGTGGCTACGCAGGCCCATCCATTGCCTGCCGTTTACTCGC
GCACAGCAGCATCACACCCTTCCAGGCTTTGCCAATCCACAACAAGCAGC
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