mRNA_M-pyrifera_M_contig68097.16411.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68097.16411.1
Unique NamemRNA_M-pyrifera_M_contig68097.16411.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: X1LVK8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1LVK8_9ZZZZ)

HSP 1 Score: 187 bits (475), Expect = 3.560e-56
Identity = 94/170 (55.29%), Postives = 119/170 (70.00%), Query Frame = 1
Query:  208 MRPDTLFHDQDGVELYFMMGFGDIPDITGWDKLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRYDGE--DGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRY 711
            ++P  + +D +  +LYF+ GFGD  D   WD+L+ SKKNN VSI+VKL Y   SILF GDAVGR D +  D CIA+EK+M+D+L ++LIDSDV++A HHGADN SC  FI  VSPEYV F  GH+YRHP  STA R++D YG+   NI RTD GD+E    E  + EW Y
Sbjct:    3 IQPGDILYDNNDAKLYFVCGFGDPLDT--WDELNSSKKNNAVSIIVKLEYQGKSILFCGDAVGREDCQTTDDCIATEKYMVDNLPDELIDSDVIIAPHHGADNSSCDAFISEVSPEYVVFSCGHRYRHPRYSTAKRYLD-YGVELSNIFRTDRGDHEVRTGEECEIEWDY 169          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: A0A355SKV3_9GAMM (Lactamase_B domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A355SKV3_9GAMM)

HSP 1 Score: 169 bits (428), Expect = 4.240e-47
Identity = 106/267 (39.70%), Postives = 146/267 (54.68%), Query Frame = 1
Query:    4 SEIEYLILSHTDADHWGSAKKIVENYKVKNILRTDYRIGDRSKTLDKAIKAIDEVTYA-----YNDFNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWDKLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRYD-GEDGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDDHIRIIFPADGQI 786
            + I+ LILSH+DADH G+   I+  Y VK ++RT     D + T   A  AI     A      N + L +  M P   +   D   L F+ GF D P   G      SK NN +SIV++L Y   +ILFTGDAVGR D G   C A+EK+M+D+  +  + SDV++A HHGA+N S   FI+AV P++V FPAG  + HP  +   R++D +G+  + I RTD GD E        +EW +   +   DS  DD I II  ADG++
Sbjct:   77 ASIDLLILSHSDADHLGATDDILNTYPVKRVVRTGDVRWDTT-TWRNAYWAIRRQREAGELEDINLWTLPDKAMPPGETYTYGD-TSLVFVSGFNDPPSDWGISFFDQSKMNNAISIVIRLAYAGRAILFTGDAVGRTDDGNKDCWATEKYMVDNTPDVPLQSDVIIAPHHGANNASSDCFIEAVDPDWVIFPAGSDHEHPRAAAVRRYLD-HGIPLERIFRTDLGDNEG------DEEWSHG-TSATGDSRGDDDIEIIITADGEV 333          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: A0A4Q3C499_9BACT (MBL fold metallo-hydrolase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3C499_9BACT)

HSP 1 Score: 162 bits (410), Expect = 9.680e-45
Identity = 105/266 (39.47%), Postives = 143/266 (53.76%), Query Frame = 1
Query:    1 GSEIEYLILSHTDADHWGSAKKIVENYKVKNILR-TDYRIGDRSKTLDKAIKAIDEVTYAYNDFNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWDKLSHSKK-NNGVSIVVKLVYGEHSILFTGDAVGRYDGE--DGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDDHIRIIFPADGQI 786
            GS I++L+LSH+DADH G+  +I+E Y VK ++R T  R     +  D+AI A          F     E+RP   +   D   + F+ GF + P+   WD   +S +  N  SI+V+LVY   SIL TGDAVGR+ G+    CIA+E+F +D      I S VLVA HHGADNGS + FI  V P YV F AGH++ HP L+TA R++ + G+    + RTD GD E       +QEW         D   DD I +      Q+
Sbjct:   50 GSTIDWLVLSHSDADHLGAVNEIMEGYTVKRVVRPTIKRDTGTWREADEAINASISAGETIQ-FVAGAREVRPGAKYRTGDAT-ITFVCGFNEPPE--SWDLARNSSEWLNAGSILVRLVYAGRSILLTGDAVGRHIGDPLSSCIATERFAVDQARRVPIRSYVLVAPHHGADNGSSKPFIQEVKPSYVLFSAGHRFGHPRLTTALRYLGN-GVEGRRMFRTDRGDDEG------EQEWGIGRTPGTNDRAGDDDIDVTISETSQV 304          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: A0A7X9TFI3_9BACT (MBL fold metallo-hydrolase n=1 Tax=Flammeovirga yaeyamensis TaxID=367791 RepID=A0A7X9TFI3_9BACT)

HSP 1 Score: 154 bits (388), Expect = 4.820e-41
Identity = 103/282 (36.52%), Postives = 153/282 (54.26%), Query Frame = 1
Query:    1 GSEIEYLILSHTDADHWGSAKKIVENYKVKNILRTDY---RIGDRSKTL-DKAIKAIDEVTYAYNDFNLSENEMRPDTLFHDQDGV-ELYFMMGFGDIPDITGWDKLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRYDGEDGC--IASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTE-------PYQ--QEWRYPFMTEDKDSHSDDHIRIIFPADGQIQFDF 798
            G  IE+++LSHTDADH  +AK ++E Y VK I+ T Y    IG+   +  ++ ++ I++V    N   ++ N+ + +    D   V + YF    G    +  W+ LS +K  N VSI++KL Y   SILFTGDAVGR  G +    IA++KF+ ++  ++L + DV++A HHGADNGS ++F +  +P+YV FPAG+ Y HP   TA R+    G S  NI RTD G+     +E        Y   +EW        KD   DD I I       ++ D+
Sbjct:   70 GDSIEFMVLSHTDADHIYAAKYVLEKYYVKKIITTGYTKNNIGNNHNSYWNRLLRKIEKVESKKNTQVINLNKEKRNISTQDNFYVGQSYFEFLSGFHQPLPNWN-LSEAKSVNAVSIIMKLTYMNKSILFTGDAVGRKIGSNNSNLIATDKFLAENKKDEL-NVDVVIAPHHGADNGSSKKFCELTTPKYVIFPAGNTYGHPTKQTADRYHLFGGTSYQNIFRTDRGEGWVNSSEYNNYINAKYNDVREWAGQAQKNYKDKIGDDDIYIRISKASMLEVDY 349          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: UPI001E426369 (MBL fold metallo-hydrolase n=2 Tax=Stenotrophomonas maltophilia TaxID=40324 RepID=UPI001E426369)

HSP 1 Score: 144 bits (363), Expect = 1.100e-37
Identity = 93/270 (34.44%), Postives = 150/270 (55.56%), Query Frame = 1
Query:   10 IEYLILSHTDADHWGSAKKIVENYKVKNILRTDY------RIGDRS-KTLDKAIKAIDEVTYAYND-FNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWDKLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRY---DGEDGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDDHIRIIFPADGQI 786
            +  ++L+H+D DH G+   I+E+ +V  +L T Y       +G     T   A +AI EV    +   NL    +    +F +   VE+ F+ G+ + PD+    ++S S+ +N VSI+V++ +G  SIL TGDA+GR      ++ C  SE + ++++ EDL+ +DVL+A+HHG +NGS + FI AV+PE+V F +G  + HP+  T  RF+   G+ + ++LRTD G       E  + EW    +    D   DD I I+F +DG I
Sbjct:   47 LSMVVLTHSDGDHLGNLPLILESREVGTLLWTGYTPPHCTHVGASGCTTFFNAREAIGEVAEDQSSVLNLKTTPLASGQVF-ELGEVEITFLAGWHEFPDV---GQMSPSEISNAVSIMVRISHGGRSILVTGDAIGRPLRGSDDETCTGSEGWAVENVEEDLLSADVLIASHHGGNNGSAKCFITAVAPEFVIFSSGGGHGHPHRETVARFLA-AGIPEAHLLRTDRGSNSASDAE--EGEWAETSVPACGDGSKDDDIDILFGSDGGI 309          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: A0A2W5M1S6_9GAMM (Lactamase_B domain-containing protein n=3 Tax=Stenotrophomonas TaxID=40323 RepID=A0A2W5M1S6_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 7.430e-37
Identity = 93/270 (34.44%), Postives = 150/270 (55.56%), Query Frame = 1
Query:   10 IEYLILSHTDADHWGSAKKIVENYKVKNILRTDY------RIGDRS-KTLDKAIKAIDEVTYAYND-FNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWDKLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRY---DGEDGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDDHIRIIFPADGQI 786
            +  ++L+H+D DH G+   I+E+ +V  +L T Y       +G     T   A +AI EV    +   NL    +    +F +   VE+ F+ G+ + PD+    ++S S+ +N VSI+V++ +G  SIL TGDA+GR      ++ C  SE + ++++ EDL+ +DVL+A+HHG +NGS + FI AV+PE+V F +G  + HP+  T  RF+   G+ + ++LRTD G       E  + EW    +    D   DD I I+F +DG I
Sbjct:  140 LSMVVLTHSDGDHLGNLPLILESREVGTLLWTGYTPPHCTHVGASGCTTFFNAREAIGEVAEDQSSVLNLKTTPLASGQVF-ELGEVEITFLAGWHEFPDV---GQMSPSEISNAVSIMVRISHGGRSILVTGDAIGRPLRGSDDETCTGSEGWAVENVEEDLLSADVLIASHHGGNNGSAKCFITAVAPEFVIFSSGGGHGHPHRETVARFLA-AGIPEAHLLRTDRGSNSASDAE--EGEWAETSVPACGDGSKDDDIDILFGSDGGI 402          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: UPI0015E6FAB4 (MBL fold metallo-hydrolase n=1 Tax=Vibrio splendidus TaxID=29497 RepID=UPI0015E6FAB4)

HSP 1 Score: 140 bits (353), Expect = 2.670e-36
Identity = 99/261 (37.93%), Postives = 139/261 (53.26%), Query Frame = 1
Query:    4 SEIEYLILSHTDADHWGSAKKIVENYKVKNILRTDYRIGDRSKTLDKAIKAIDEVTYAYND-FNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWDK----LSHSKKNNGVSIVVKL-VYGEHSILFTGDAVGRYDGE--DGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDDHIRI 762
            ++I  +++SH D+DH G+ K+I+       I+ T Y    R KT  +A  AI E +   +   NLS  ++      H  D + + F+ G GD      WD     LS + + N +SIVVKL  YG+ SILF+GD VGR+DG+  D C  +E+ +      +L  SD+L+A HHGADNGS + FI  V PE V F +GH+Y+HP L+T  R      +   NI RTD GD E         EW Y  +   KD+  DD + I
Sbjct:   44 NDISLVVISHPDSDHLGNLKEILSRNTADIIVHTGYE-RTRVKTWREANHAISEASKEGSSVINLSSFQLSSVPTQHLGD-MSVEFLYGMGD------WDSELGSLSENHRRNAISIVVKLSAYGK-SILFSGDTVGRHDGDPDDKCAYAERDITSKTDYNLR-SDILIAPHHGADNGSSKCFISKVKPEVVIFSSGHRYQHPRLATVDRIKAAIPIENHNIYRTDRGDDEGSN------EWDYLRIEGCKDTTGDDDVII 288          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: A0A522FNV5_9BACT (MBL fold metallo-hydrolase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A522FNV5_9BACT)

HSP 1 Score: 139 bits (350), Expect = 3.380e-35
Identity = 95/273 (34.80%), Postives = 139/273 (50.92%), Query Frame = 1
Query:   10 IEYLILSHTDADHWGSAKKIVENYKVKNILRTDYR---IGDRSKTLDKAIKAIDEVTYA-YNDFNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWDKLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRYDGEDGC--IASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHK--YRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWR-YPFMTEDKDSHSDDHIRIIFPADGQIQFDFE 801
            ++ LILSHTDADH GSA  +V+ Y ++  + T Y     GD +      +  +        N  N++    +      +  G  +  + GFG     + WD    SKK N VSIV+K+ Y   S++F GDAVG+    D    IA+EK++ D+    L  S+V++A HHGADN S ++FI  V+PEYV F AG    Y+HP   T  R+ +   +S D I RTD G+  P      ++EW  +       D   DD I I    DGQ++ ++E
Sbjct:   78 VDLLILSHTDADHIGSAAWLVKEYNIQKAIHTGYHKGLAGDENGPTQSYLNFVHACENENVNVININNRTSKFFDTTMNFGGAIVDILCGFG--KPKSSWDLTEKSKKINSVSIVMKVEYSNKSVIFCGDAVGKPSNSDDAEPIATEKYLYDNKKSKL-KSNVIIAPHHGADNASSKKFIQTVNPEYVIFSAGSDKTYQHPRKRTVERYSNYCQISIDKIFRTDKGEGNPDCDN--EEEWDGFAEGGNCTDPVGDDAIDIKIYNDGQLKVNYE 345          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: UPI001657D6BD (MBL fold metallo-hydrolase n=1 Tax=Sphingomonas sp. JC676 TaxID=2768065 RepID=UPI001657D6BD)

HSP 1 Score: 137 bits (345), Expect = 2.050e-34
Identity = 100/295 (33.90%), Postives = 140/295 (47.46%), Query Frame = 1
Query:   10 IEYLILSHTDADHWGSAKKIVENYKVKNILRTDYRIGDRSKTLDK-AIKAIDEVTYAYNDFNLSENE---MRPDTLFHDQDG--------------VELYFMMGFGDIPDITGWDK--------------LSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRY--DGEDGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHK-YRHPNLSTATRFID---DYGLSKDNILRTDHGDYEPG-GTEPYQQEWRYPFMTEDKDSHSDDHIRIIFPAD 777
            ++ ++LSH+D DH G    I++   ++     D    +   TL K A  AID      +D    + +   +     + +Q G                +  + G+GD   + G  +              L   + NN VS++V+  Y  HS+L TGD VGR+  D  + C  +E+  + S +  L+DSDVL+  HHGADN S Q FI+AVSP YV F AGHK YRHP  S   R ++      L  DNILRTD GD EP  GT    QEW Y       D   DD + I+ P+D
Sbjct:   81 LDLVVLSHSDGDHIGELGYILKRGALEIFHPGDAHRPNPDATLIKQARNAIDHSGAVVHDLRKLQGDRFTLSGPGQYAEQAGPNNIDAIRVVPLGDATVTLLAGWGDADWVVGPQEEKAGQDGQSRVRAALEDGEHNNAVSLIVRFEYAGHSVLLTGDTVGRHIRDPRNACKFAERITVASANPALVDSDVLIGQHHGADNASSQCFIEAVSPRYVVFSAGHKDYRHPRNSVIRRLLEADLQPKLGPDNILRTDRGDSEPPKGTTWGDQEWVYGSFKGCVDPIGDDDVEILLPSD 375          
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Match: A0A2N8ZHI5_9VIBR (Lactamase_B domain-containing protein n=2 Tax=Vibrio tapetis TaxID=52443 RepID=A0A2N8ZHI5_9VIBR)

HSP 1 Score: 135 bits (340), Expect = 2.230e-34
Identity = 90/266 (33.83%), Postives = 137/266 (51.50%), Query Frame = 1
Query:    7 EIEYLILSHTDADHWGSAKKIVENYKVKNILRTDYRIGDRSKTLDKAIKAI----DEVTYAYNDFNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWD----KLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRYDGE--DGCIASEKFMLDSLSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLSTATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDDHIRIIFPA 774
            +I  +++SH D+DH+ +   I+E  K + I+ T Y+   R  T   A  AI       +   N  + S + M    +  D   + + F+ G G+      WD    +LS S   N +SIVV+L      +L  GD VGR+DG+  D C+ +E+ M+ +++ D +++DVL+A HHGADN S   F++AVSP YV + AGH Y+HP   TA R +   G+ + N+ RTD GD E         EW +  +    D   DD + I   A
Sbjct:   49 DISLVVISHLDSDHFSNLPDILEQKKAELIVHTGYK--RRKTTWHAANHAIAMGAKRGSTVINLQSTSLDMMVSPIVIGD---MTIDFVYGLGE------WDVNKGRLSESHLRNALSIVVRLSAHGKEVLLAGDTVGRHDGDPQDSCLYAEQDMVTAVTRDKLEADVLIAPHHGADNASSSCFLEAVSPTYVIYSAGHSYKHPREVTARRTLTTLGIPQTNMFRTDRGDDEG------DLEWDFQRIPGCSDQAGDDDVAIELSA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68097.16411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X1LVK8_9ZZZZ3.560e-5655.29Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A355SKV3_9GAMM4.240e-4739.70Lactamase_B domain-containing protein n=1 Tax=Hali... [more]
A0A4Q3C499_9BACT9.680e-4539.47MBL fold metallo-hydrolase n=1 Tax=Verrucomicrobia... [more]
A0A7X9TFI3_9BACT4.820e-4136.52MBL fold metallo-hydrolase n=1 Tax=Flammeovirga ya... [more]
UPI001E4263691.100e-3734.44MBL fold metallo-hydrolase n=2 Tax=Stenotrophomona... [more]
A0A2W5M1S6_9GAMM7.430e-3734.44Lactamase_B domain-containing protein n=3 Tax=Sten... [more]
UPI0015E6FAB42.670e-3637.93MBL fold metallo-hydrolase n=1 Tax=Vibrio splendid... [more]
A0A522FNV5_9BACT3.380e-3534.80MBL fold metallo-hydrolase n=1 Tax=Bacteroidetes b... [more]
UPI001657D6BD2.050e-3433.90MBL fold metallo-hydrolase n=1 Tax=Sphingomonas sp... [more]
A0A2N8ZHI5_9VIBR2.230e-3433.83Lactamase_B domain-containing protein n=2 Tax=Vibr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68097contigM-pyrifera_M_contig68097:426..1238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score141.0
Seed ortholog evalue8.4e-31
Seed eggNOG ortholog1298865.H978DRAFT_0538
Preferred namecomEC
KEGG koko:K02238
KEGG TC3.A.11.1,3.A.11.2
KEGG ModuleM00429
Hectar predicted targeting categoryother localisation
EggNOG free text desc.competence protein COMEC
EggNOG OGsCOG2333@1,COG2333@2
COG Functional cat.N
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02044
Exons1
Model size813
Cds size813
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.0178928-CDS-M-pyrifera_M_contig68097:425..12381622816572.0178928-CDS-M-pyrifera_M_contig68097:425..1238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68097 426..1238 -
1692278053.8628864-CDS-M-pyrifera_M_contig68097:425..12381692278053.8628864-CDS-M-pyrifera_M_contig68097:425..1238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68097 426..1238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68097.16411.1prot_M-pyrifera_M_contig68097.16411.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68097 426..1238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68097.16411.1

>prot_M-pyrifera_M_contig68097.16411.1 ID=prot_M-pyrifera_M_contig68097.16411.1|Name=mRNA_M-pyrifera_M_contig68097.16411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=271bp
GSEIEYLILSHTDADHWGSAKKIVENYKVKNILRTDYRIGDRSKTLDKAI
KAIDEVTYAYNDFNLSENEMRPDTLFHDQDGVELYFMMGFGDIPDITGWD
KLSHSKKNNGVSIVVKLVYGEHSILFTGDAVGRYDGEDGCIASEKFMLDS
LSEDLIDSDVLVAAHHGADNGSCQEFIDAVSPEYVAFPAGHKYRHPNLST
ATRFIDDYGLSKDNILRTDHGDYEPGGTEPYQQEWRYPFMTEDKDSHSDD
HIRIIFPADGQIQFDFEIAH*
back to top

mRNA from alignment at M-pyrifera_M_contig68097:426..1238-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68097.16411.1 ID=mRNA_M-pyrifera_M_contig68097.16411.1|Name=mRNA_M-pyrifera_M_contig68097.16411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=813bp|location=Sequence derived from alignment at M-pyrifera_M_contig68097:426..1238- (Macrocystis pyrifera P11B4 male)
GGGTCGGAAATAGAATACCTGATATTGAGCCACACCGATGCAGACCACTG GGGATCAGCCAAGAAGATTGTGGAAAACTATAAGGTAAAAAACATATTAC GCACCGATTATAGAATAGGTGATAGATCCAAAACGCTTGACAAGGCTATC AAGGCCATCGACGAGGTAACCTATGCATATAACGACTTCAACTTGTCCGA AAACGAAATGAGGCCAGATACTTTGTTCCATGATCAGGATGGCGTGGAGC TGTATTTTATGATGGGATTTGGAGACATACCCGATATAACAGGTTGGGAT AAATTGAGTCACTCTAAAAAGAACAACGGAGTTAGCATCGTAGTGAAGCT GGTCTATGGTGAGCACTCGATTCTTTTTACCGGAGATGCCGTAGGCCGAT ACGATGGTGAGGATGGATGCATTGCTTCCGAGAAATTTATGCTAGACAGT CTGTCCGAGGATCTCATAGATTCAGATGTATTAGTAGCTGCACATCATGG TGCTGACAATGGCAGTTGTCAGGAGTTTATCGATGCGGTGAGTCCCGAGT ATGTCGCCTTCCCTGCGGGACATAAGTACCGTCATCCTAATTTGAGTACA GCCACCCGATTTATAGACGACTATGGACTGTCGAAAGATAATATCCTCCG AACTGATCACGGCGACTATGAGCCTGGAGGTACCGAACCTTATCAGCAGG AATGGAGATATCCCTTTATGACTGAAGACAAGGACAGCCATAGTGATGAT CACATCAGAATCATTTTTCCAGCTGATGGGCAGATTCAGTTTGATTTTGA AATAGCGCATTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68097:426..1238-

>mRNA_M-pyrifera_M_contig68097.16411.1 ID=mRNA_M-pyrifera_M_contig68097.16411.1|Name=mRNA_M-pyrifera_M_contig68097.16411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1626bp|location=Sequence derived from alignment at M-pyrifera_M_contig68097:426..1238- (Macrocystis pyrifera P11B4 male)
GGGTCGGAAATAGAATACCTGATATTGAGCCACACCGATGCAGACCACTG
GGGATCAGCCAAGAAGATTGTGGAAAACTATAAGGTAAAAAACATATTAC
GCACCGATTATAGAATAGGTGATAGATCCAAAACGCTTGACAAGGCTATC
AAGGCCATCGACGAGGTAACCTATGCATATAACGACTTCAACTTGTCCGA
AAACGAAATGAGGCCAGATACTTTGTTCCATGATCAGGATGGCGTGGAGC
TGTATTTTATGATGGGATTTGGAGACATACCCGATATAACAGGTTGGGAT
AAATTGAGTCACTCTAAAAAGAACAACGGAGTTAGCATCGTAGTGAAGCT
GGTCTATGGTGAGCACTCGATTCTTTTTACCGGAGATGCCGTAGGCCGAT
ACGATGGTGAGGATGGATGCATTGCTTCCGAGAAATTTATGCTAGACAGT
CTGTCCGAGGATCTCATAGATTCAGATGTATTAGTAGCTGCACATCATGG
TGCTGACAATGGCAGTTGTCAGGAGTTTATCGATGCGGTGAGTCCCGAGT
ATGTCGCCTTCCCTGCGGGACATAAGTACCGTCATCCTAATTTGAGTACA
GCCACCCGATTTATAGACGACTATGGACTGTCGAAAGATAATATCCTCCG
AACTGATCACGGCGACTATGAGCCTGGAGGTACCGAACCTTATCAGCAGG
AATGGAGATATCCCTTTATGACTGAAGACAAGGACAGCCATAGTGATGAT
CACATCAGAATCATTTTTCCAGCTGATGGGCAGATTCAGTTTGATTTTGA
AATAGCGCATTGAGGGTCGGAAATAGAATACCTGATATTGAGCCACACCG
ATGCAGACCACTGGGGATCAGCCAAGAAGATTGTGGAAAACTATAAGGTA
AAAAACATATTACGCACCGATTATAGAATAGGTGATAGATCCAAAACGCT
TGACAAGGCTATCAAGGCCATCGACGAGGTAACCTATGCATATAACGACT
TCAACTTGTCCGAAAACGAAATGAGGCCAGATACTTTGTTCCATGATCAG
GATGGCGTGGAGCTGTATTTTATGATGGGATTTGGAGACATACCCGATAT
AACAGGTTGGGATAAATTGAGTCACTCTAAAAAGAACAACGGAGTTAGCA
TCGTAGTGAAGCTGGTCTATGGTGAGCACTCGATTCTTTTTACCGGAGAT
GCCGTAGGCCGATACGATGGTGAGGATGGATGCATTGCTTCCGAGAAATT
TATGCTAGACAGTCTGTCCGAGGATCTCATAGATTCAGATGTATTAGTAG
CTGCACATCATGGTGCTGACAATGGCAGTTGTCAGGAGTTTATCGATGCG
GTGAGTCCCGAGTATGTCGCCTTCCCTGCGGGACATAAGTACCGTCATCC
TAATTTGAGTACAGCCACCCGATTTATAGACGACTATGGACTGTCGAAAG
ATAATATCCTCCGAACTGATCACGGCGACTATGAGCCTGGAGGTACCGAA
CCTTATCAGCAGGAATGGAGATATCCCTTTATGACTGAAGACAAGGACAG
CCATAGTGATGATCACATCAGAATCATTTTTCCAGCTGATGGGCAGATTC
AGTTTGATTTTGAAATAGCGCATTGA
back to top