mRNA_M-pyrifera_M_contig6803.16404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6803.16404.1
Unique NamemRNA_M-pyrifera_M_contig6803.16404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: G3G5W9_9PHAE (Heat shock protein 90 family (Fragment) n=24 Tax=Fucaceae TaxID=3010 RepID=G3G5W9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 9.580e-42
Identity = 69/79 (87.34%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            MEINPRHPIVHELNKRIEEDPDSEET+D+SWLLYD+ALTASGFQVEDTE+FASRVQR MAKTL+L+S+ELL+EA+IPDE
Sbjct:    2 MEINPRHPIVHELNKRIEEDPDSEETKDMSWLLYDTALTASGFQVEDTESFASRVQRIMAKTLNLSSLELLDEAEIPDE 80
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: D8LHY7_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 9.240e-37
Identity = 69/79 (87.34%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            MEINPRHPIVHELNK+IEEDPDSEET+DLSWLLY++ALTASGFQVEDTEAFA+RVQRAMAKTL+L+SM+LLEE +IPDE
Sbjct:  671 MEINPRHPIVHELNKKIEEDPDSEETKDLSWLLYETALTASGFQVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 749
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A482RYW1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYW1_9ARCH)

HSP 1 Score: 85.5 bits (210), Expect = 5.940e-19
Identity = 38/79 (48.10%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            +E+NPRHPI+ ELNK+++ +PD+E T++L+ L++DSAL +SGF  +D ++FA R+Q+ MA +L+L S+EL++E  + +E
Sbjct:  120 LELNPRHPIIVELNKKVQSEPDAESTKNLAHLIFDSALMSSGFVHDDVDSFAVRMQQVMASSLNLQSLELVDEVAVEEE 198
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A6G0WLA2_9STRA (HATPase_c domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLA2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.550e-19
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            ME+NPRHPIV +L       PDS ETQDLSWLLYD+ALT SGF ++D + FASRV R M  T+ L+S+EL  E  +P E
Sbjct:  691 MELNPRHPIVSKLRDLYATQPDSTETQDLSWLLYDAALTNSGFAMDDVDHFASRVYRLMKHTMGLDSLELEPELALPAE 769
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A7S2FDD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDD0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.320e-18
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEE 219
            MEINPRHP++ ELN ++E DPDSEET+D++WLL+D+AL  SGF  +D E+++SR+ R MAK L + +   LEE
Sbjct:  702 MEINPRHPLIVELNTKVESDPDSEETKDIAWLLHDTALLQSGFMQDDIESYSSRMYRTMAKALDMETGLDLEE 774
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A3M6VNG1_9STRA (HATPase_c domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNG1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.540e-18
Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            +E+NPRHPI+ +LN+ +  DP +EET+DL+WLLYD+AL  SGF + DT+ F+SR+ R M  ++ + S+EL  E ++P++
Sbjct:  722 LELNPRHPIITKLNELMISDPQNEETKDLAWLLYDTALINSGFDLSDTDHFSSRIHRIMRNSMGITSLELEPEIEVPED 800
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A8J5IW23_9STRA (HATPase_c domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IW23_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.300e-18
Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            +E+NPRHPIV +LN+ +  DP+ EET+DL+WLLYD+AL  SGF + +T  F++RV R M  ++ ++S+EL  E +IP +
Sbjct:  467 LELNPRHPIVSKLNELMVSDPEKEETKDLAWLLYDTALINSGFDISETNHFSTRVHRIMKSSMGIDSLELEPEIEIPQD 545
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A024TA70_9STRA (HATPase_c domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TA70_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.450e-18
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            ME+NPRHPI+ +L       PD+ ET DLSWLLYD+ALT SGF ++D + FASRV R M  T+ L+S+EL  E ++P E
Sbjct:  693 MELNPRHPIIGKLRDLFATAPDATETHDLSWLLYDAALTNSGFAMDDVDHFASRVYRIMKTTMGLDSLELEPELNLPPE 771
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: H3GCK5_PHYRM (HATPase_c domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3GCK5_PHYRM)

HSP 1 Score: 85.9 bits (211), Expect = 8.470e-18
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            +E+NPRHPIV +LN  +  DP+ +ET+DL+WLLYD+AL  SGF + DT  F++R+ R M  ++ ++S+EL  E ++P+E
Sbjct:  728 LELNPRHPIVSKLNGLMVSDPEKDETKDLAWLLYDTALVNSGFDMADTNQFSTRIHRIMKSSMGIDSLELEPEIEVPEE 806
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BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Match: A0A7S2RKZ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKZ1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17
Identity = 38/79 (48.10%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEAFASRVQRAMAKTLSLNSMELLEEADIPDE 237
            +EINPRHPI+ ELN++++ +P+S+E  D +WL+YD+AL  SGF  +DT+AFASR+ R +   L L+S++L E  ++P++
Sbjct:  701 LEINPRHPIIAELNRQVQGNPESDEVADTAWLIYDTALVQSGFPQDDTDAFASRMFRTIKGALHLDSLDLEEAIEVPED 779
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6803.16404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3G5W9_9PHAE9.580e-4287.34Heat shock protein 90 family (Fragment) n=24 Tax=F... [more]
D8LHY7_ECTSI9.240e-3787.34Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A482RYW1_9ARCH5.940e-1948.10Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A6G0WLA2_9STRA9.550e-1958.23HATPase_c domain-containing protein n=1 Tax=Aphano... [more]
A0A7S2FDD0_9STRA3.320e-1856.16Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A3M6VNG1_9STRA4.540e-1848.10HATPase_c domain-containing protein n=2 Tax=Perono... [more]
A0A8J5IW23_9STRA8.300e-1849.37HATPase_c domain-containing protein n=1 Tax=Phytop... [more]
A0A024TA70_9STRA8.450e-1854.43HATPase_c domain-containing protein n=2 Tax=Aphano... [more]
H3GCK5_PHYRM8.470e-1848.10HATPase_c domain-containing protein n=10 Tax=Phyto... [more]
A0A7S2RKZ1_9STRA1.150e-1748.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6803contigM-pyrifera_M_contig6803:6686..8678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog157072.XP_008880478.1
Preferred nameHSP90B
KEGG koko:K04079,ko:K09487
KEGG Pathwayko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map04918,map05200,map05215,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0002790,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005788,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009306,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009888,GO:0009934,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010073,GO:0010075,GO:0010243,GO:0010498,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019941,GO:0022603,GO:0030054,GO:0030163,GO:0030433,GO:0031090,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033554,GO:0034976,GO:0036503,GO:0040008,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046903,GO:0048046,GO:0048507,GO:0048509,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098588,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0326@1,KOG0020@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147
Exons3
Model size238
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6803.16404.1prot_M-pyrifera_M_contig6803.16404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6803 6686..8678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.5423217-CDS-M-pyrifera_M_contig6803:6685..67901622816571.5423217-CDS-M-pyrifera_M_contig6803:6685..6790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6803 6686..6790 -
1692278053.5573573-CDS-M-pyrifera_M_contig6803:6685..67901692278053.5573573-CDS-M-pyrifera_M_contig6803:6685..6790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6803 6686..6790 -
1622816571.5541246-CDS-M-pyrifera_M_contig6803:7034..71181622816571.5541246-CDS-M-pyrifera_M_contig6803:7034..7118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6803 7035..7118 -
1692278053.5703034-CDS-M-pyrifera_M_contig6803:7034..71181692278053.5703034-CDS-M-pyrifera_M_contig6803:7034..7118Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6803 7035..7118 -
1622816571.566419-CDS-M-pyrifera_M_contig6803:8630..86781622816571.566419-CDS-M-pyrifera_M_contig6803:8630..8678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6803 8631..8678 -
1692278053.5799522-CDS-M-pyrifera_M_contig6803:8630..86781692278053.5799522-CDS-M-pyrifera_M_contig6803:8630..8678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6803 8631..8678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6803.16404.1

>prot_M-pyrifera_M_contig6803.16404.1 ID=prot_M-pyrifera_M_contig6803.16404.1|Name=mRNA_M-pyrifera_M_contig6803.16404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MEINPRHPIVHELNKRIEEDPDSEETQDLSWLLYDSALTASGFQVEDTEA
FASRVQRAMAKTLSLNSMELLEEADIPDE
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mRNA from alignment at M-pyrifera_M_contig6803:6686..8678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6803.16404.1 ID=mRNA_M-pyrifera_M_contig6803.16404.1|Name=mRNA_M-pyrifera_M_contig6803.16404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1993bp|location=Sequence derived from alignment at M-pyrifera_M_contig6803:6686..8678- (Macrocystis pyrifera P11B4 male)
ATGGAGATCAACCCTCGCCACCCCATCGTCCACGAGCTCAACAAGAGGGT
GAGAATAAAAACAAATCATGGTACCGTGACATATGTTTAGTACGTACAGT
GGCGTGCGGTATAGACCCACGAACAAGGAATGGCCTACATAAATAAGAAT
ATAAGGCTCACTTTCGGGGGGGCGCTGAGAGAATTGCATGAAGAAATCGT
GCTCAGCGGCAAGGGATACAGTACACTAAATCCTTCCTACCAGGTGAATA
TTATGCCATCCTCTACAATAGGTTGTTGAAGGATGGTGCCACAGTAAGGT
TCTAAGGTTTTTCCTCACGTTGCGTAGGCGTTTCTTTATGGAGGGCCCAT
AAGTTGTCAATTCTCTACACGTATACTTTGTCTCCCCGAAACAAGCAGTC
GTGTGACGTATTTGCTCCCCCTGTGCATGAATTCGTTCGTTGTCTTGGAC
ATGATTTGACCCTGTTGAGGACAGATCACGATCTAGATCGTCTAGAATTA
TAAGCTGCCGTTGTGGTGTGTCGCGCAGGATCTGTATGAGACAGCTCCAA
CCCAAGAAACATGTCCGGAACCGTGCCGATTATACGGCTACCACCCGGCA
ACATGAGCTAGATCCCACTGATCCATACAGATCATGAATACGTCTATCTA
TCTGCCCTGAAAGATCTTGATCATAGAACTGTGGAAATCAATGATATGTT
TAAGGTGTGAACCAATACTATACCCTATCCGAGCCTTTAAAACCACCGGG
AATGCGATAGTGGACCACAATGAGTTGTAGGATGTCACCGTGAGTTTAAC
CGCGAGTTTTACTCACGTCGCGTAGGGGCATTTGCCGCTTGTCGTCATCC
TGTCGTCTCTGCGGCTGCTTGGCGTCATGAAAGAAAAACCTCAAAAGAAG
ATTCTCAGACGAACTTTTGAACAAATAGCGAAAAGTTCGCAGGGGAAAAT
TATCGTTAGACATTTTCCCAGCAAAAAACTGCTCAGAATAAACCTATCAG
AAGCATGTTCTCAAATAACAAGTATCTGCGCCTGCTTGGCACCACCAAGA
GACAGCCTCAAAAAAAGGTTTATCATAACAAACCTACCAGAAAAATGTTT
CCAGACAAAATTTCTGGAAAAAAAAGGAGTTAGCAGGATAAGTTATCGTC
AGACAATCCATAGAAAAACCTTGTCAGAATAAATGAACTTGTGAAAAGAA
TGTTCTCAGTCAAAATCTCTCTCAAACAAATGAAAAGTCATCAGGAGAAA
ATACCAAAAATAAAATTGTCAGAAGAACCTTCTCAAAAGGATATTCTCAA
ACGCGAACCTTATATCGCGGAGAGCTTCATGTCAAAAATGGGCCGTTCTC
GGCTCTGTGCTGCTACGTCGGTTATCCAGAGGGCTCAACCACATTATTTC
CTCGGTGACAGGTGTTCTCCGCCTGATGTGCACCACTCACGCGCACACTA
CATGTCTCACTGCTCTGACACGGCGTGGTCCCCCATCTCTCGCACCCGGC
TCTACGCTCGTACGTGATGCCTGAACTCTTTCCTCGTACCCATCGGTGGG
TGGGCTTTAGATTGAGGAGGACCCGGATTCGGAAGAGACGCAGGACCTTT
CTTGGCTCCTCTACGACTCCGCCCTCACCGCCTCCGGCTTCCAGGTGCGT
CTCCATGCACTGCCGTAGGTTTACGTTTCCGCGGAAACATGCATCTACAC
GTTCCCCTCCCCACGACAATTTTTTTGTCTTGTGAGAAGTGGGGGGGGGC
AAGTTTTTGTTTTGTGTGAACAAAGTACACGCTCTCGCGGAATTTCGCAG
TGGCGACTATTTGTAGCCTGCTGCTGTACCATACCTTGCGGAATAAACTC
TCGGCTGCTTGCGCCGGACCGGGTGTGTCGGGTTTCAGGTGGAAGACACG
GAGGCGTTTGCCAGCCGGGTGCAGCGTGCCATGGCCAAGACACTCAGCCT
GAACAGCATGGAACTCCTGGAAGAGGCCGACATCCCAGACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6803:6686..8678-

>mRNA_M-pyrifera_M_contig6803.16404.1 ID=mRNA_M-pyrifera_M_contig6803.16404.1|Name=mRNA_M-pyrifera_M_contig6803.16404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig6803:6686..8678- (Macrocystis pyrifera P11B4 male)
ATGGAGATCAACCCTCGCCACCCCATCGTCCACGAGCTCAACAAGAGGAT
GGAGATCAACCCTCGCCACCCCATCGTCCACGAGCTCAACAAGAGGATTG
AGGAGGACCCGGATTCGGAAGAGACGCAGGACCTTTCTTGGCTCCTCTAC
GACTCCGCCCTCACCGCCTCCGGCTTCCAGATTGAGGAGGACCCGGATTC
GGAAGAGACGCAGGACCTTTCTTGGCTCCTCTACGACTCCGCCCTCACCG
CCTCCGGCTTCCAGGTGGAAGACACGGAGGCGTTTGCCAGCCGGGTGCAG
CGTGCCATGGCCAAGACACTCAGCCTGAACAGCATGGAACTCCTGGAAGA
GGCCGACATCCCAGACGAGGTGGAAGACACGGAGGCGTTTGCCAGCCGGG
TGCAGCGTGCCATGGCCAAGACACTCAGCCTGAACAGCATGGAACTCCTG
GAAGAGGCCGACATCCCAGACGAG
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