mRNA_M-pyrifera_M_contig67986.16398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67986.16398.1
Unique NamemRNA_M-pyrifera_M_contig67986.16398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67986.16398.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.530e-23
Identity = 43/53 (81.13%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:   37 SLDLSVRWDGLVLQNVELRRDFLADLLGLPVDVPHAFIRKAVLHLPWYTLMLG 195
            SLDLS+RW+G+VL++VELRRDFL++LLGLPVDVPHAF+R+AVLHLPWYTL+LG
Sbjct:  194 SLDLSLRWEGVVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLLLG 246
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67986.16398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI3.530e-2381.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67986contigM-pyrifera_M_contig67986:873..1070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13A N-terminal domain
Ec32 orthologEc-05_002470.1
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.2063084-CDS-M-pyrifera_M_contig67986:872..10701622816571.2063084-CDS-M-pyrifera_M_contig67986:872..1070Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67986 873..1070 +
1692278053.3459532-CDS-M-pyrifera_M_contig67986:872..10701692278053.3459532-CDS-M-pyrifera_M_contig67986:872..1070Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67986 873..1070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67986.16398.1prot_M-pyrifera_M_contig67986.16398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67986 873..1070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67986.16398.1

>prot_M-pyrifera_M_contig67986.16398.1 ID=prot_M-pyrifera_M_contig67986.16398.1|Name=mRNA_M-pyrifera_M_contig67986.16398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
SGGGGGGGGGLDSLDLSVRWDGLVLQNVELRRDFLADLLGLPVDVPHAFI
RKAVLHLPWYTLMLG*
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mRNA from alignment at M-pyrifera_M_contig67986:873..1070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67986.16398.1 ID=mRNA_M-pyrifera_M_contig67986.16398.1|Name=mRNA_M-pyrifera_M_contig67986.16398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig67986:873..1070+ (Macrocystis pyrifera P11B4 male)
AGCGGGGGGGGTGGAGGGGGTGGGGGAGGGTTGGATTCGCTGGACTTGTC
GGTGAGGTGGGATGGTCTCGTGCTGCAGAACGTTGAGCTGAGGAGGGACT
TTCTGGCGGATCTGCTGGGGCTGCCGGTGGATGTGCCTCACGCTTTCATC
AGGAAGGCGGTCCTGCATCTGCCTTGGTACACGCTCATGCTCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67986:873..1070+

>mRNA_M-pyrifera_M_contig67986.16398.1 ID=mRNA_M-pyrifera_M_contig67986.16398.1|Name=mRNA_M-pyrifera_M_contig67986.16398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig67986:873..1070+ (Macrocystis pyrifera P11B4 male)
AGCGGGGGGGGTGGAGGGGGTGGGGGAGGGTTGGATTCGCTGGACTTGTC
GGTGAGGTGGGATGGTCTCGTGCTGCAGAACGTTGAGCTGAGGAGGGACT
TTCTGGCGGATCTGCTGGGGCTGCCGGTGGATGTGCCTCACGCTTTCATC
AGGAAGGCGGTCCTGCATCTGCCTTGGTACACGCTCATGCTCGGGTGAAG
CGGGGGGGGTGGAGGGGGTGGGGGAGGGTTGGATTCGCTGGACTTGTCGG
TGAGGTGGGATGGTCTCGTGCTGCAGAACGTTGAGCTGAGGAGGGACTTT
CTGGCGGATCTGCTGGGGCTGCCGGTGGATGTGCCTCACGCTTTCATCAG
GAAGGCGGTCCTGCATCTGCCTTGGTACACGCTCATGCTCGGGTGA
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