mRNA_M-pyrifera_M_contig67965.16394.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67965.16394.1
Unique NamemRNA_M-pyrifera_M_contig67965.16394.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.420e-16
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNSFKMAPGSNPLEEMSRIEDLAAEMRTAG-MSVDDHMLYTIFIGALP-AEYGVEARNLASRDSIGRDDIIKAVRERHHQLS 390
            LAWNFLS AL +++DK+IL RCT+PR+A   L A Y P+T GA+  L R    ++     NP+  ++++  +A  M+  G  +V+D  ++   I +LP  EY V  + L+    + RD +++ +  R + L+
Sbjct:   84 LAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMAIMMQQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILVQQLSTRFNLLT 215
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 9.800e-16
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNSFKMAPGSNPLEEMSRIEDLAAEMRTAG-MSVDDHMLYTIFIGALP-AEYGVEARNLASRDSIGRDDIIKAVRERHHQLS 390
            LAWNFLS AL +++DK+IL RCT+PR+A   L A Y P+T GA+  L R    ++     NP+  ++++  +A  MR  G  +V+D  ++   I +LP  EY V  + L+    + RD  ++ +  R + L+
Sbjct:  235 LAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMANMMRQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDIFVQQLSTRFNLLT 366
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5JE80_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE80_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.310e-14
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALL-AWYGPQTTGAKSDLSRRLNSFKMAPGSNPLEEMSRIEDLAAEMRTAG-MSVDDHMLYTIFIGALP-AEYGVEARNLASRDSIGRDDIIKAVRERHHQLS 390
            LAWNFLS AL +++DK+IL RC +PR+A  +L  A Y P+T GA+  L R    ++     NP+  ++++  +A  MR  G  +V+D  ++   I +LP  EY V  + L+    + RD +++ +  R + L+
Sbjct:  254 LAWNFLSAALTTETDKAILRRCMNPREALXSLPHAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMANMMRQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILVQQLSTRFNLLT 386
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5JNY2_9PHAE (CCHC-type domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.260e-12
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNSFKMAPGSNPLEEMSRIEDLAAEMRTAG-MSVDDHMLYTIFIGALP-AEYGVEARNLASRDSIGRDDIIKAVRERHHQLS 390
            LAWNFLS AL +++DK+I  R T+PR+A   L A Y  +  GA+  L R    ++     NP+  ++++  +A  MR  G  +V+D  ++   I +LP  EY V  + L+    + RD +++ +  R + L+
Sbjct:  212 LAWNFLSAALTTETDKAIFRRSTNPREALRQLDAAYLSEAQGAQQQLFREFQQYQTPRKENPVASLNKLMGMANMMRQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILVQQLSTRFNLLT 343
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5K4W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.380e-12
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNSFKMAPGSNPLEEMSRIEDLAAEMRTAG-MSVDDHMLY 267
            LAWNFLS AL +++DK+IL RCT+PR+A   L A Y P+T GA+  L R    ++     NP+  ++++  +A  MR  G  +V+D  ++
Sbjct:  155 LAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLNKLMGMANMMRQGGGATVNDQFVF 244
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5JAJ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.090e-10
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRRLNSFKMAPGSNPLEEMSRIEDLA 219
            LAWNFLS A  S++DK+IL RCT+PR+A   L A Y  +T GA+  L R L  ++     NP+  ++++  +A
Sbjct:   45 LAWNFLSAASTSETDKAILRRCTNPREALRQLDAAYLQETQGAQQQLFRELRQYQTPRKENPVASLNKLMGMA 117
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BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Match: A0A6H5JXJ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.580e-6
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRR 150
            LAWNFLS AL +++DKSIL RCT+PR+A   L A Y P+T   +    RR
Sbjct:  144 LAWNFLSAALTTETDKSILRRCTNPREALRQLDAAYLPETXAGRHSRHRR 193
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67965.16394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5J624_9PHAE8.420e-1634.85CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KEL4_9PHAE9.800e-1635.61CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JE80_9PHAE3.310e-1434.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNY2_9PHAE2.260e-1232.58CCHC-type domain-containing protein n=5 Tax=Ectoca... [more]
A0A6H5K4W1_9PHAE4.380e-1240.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAJ1_9PHAE4.090e-1042.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXJ0_9PHAE4.580e-654.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67965contigM-pyrifera_M_contig67965:491..916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.904-CDS-M-pyrifera_M_contig67965:490..9161622816570.904-CDS-M-pyrifera_M_contig67965:490..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67965 491..916 -
1692278053.1930988-CDS-M-pyrifera_M_contig67965:490..9161692278053.1930988-CDS-M-pyrifera_M_contig67965:490..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67965 491..916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67965.16394.1prot_M-pyrifera_M_contig67965.16394.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67965 491..916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67965.16394.1

>prot_M-pyrifera_M_contig67965.16394.1 ID=prot_M-pyrifera_M_contig67965.16394.1|Name=mRNA_M-pyrifera_M_contig67965.16394.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
LAWNFLSTALKSKSDKSILHRCTSPRQAWDALLAWYGPQTTGAKSDLSRR
LNSFKMAPGSNPLEEMSRIEDLAAEMRTAGMSVDDHMLYTIFIGALPAEY
GVEARNLASRDSIGRDDIIKAVRERHHQLSGNRKKGSNAGHA
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mRNA from alignment at M-pyrifera_M_contig67965:491..916-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67965.16394.1 ID=mRNA_M-pyrifera_M_contig67965.16394.1|Name=mRNA_M-pyrifera_M_contig67965.16394.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig67965:491..916- (Macrocystis pyrifera P11B4 male)
CTGGCATGGAATTTCCTGTCGACGGCCCTCAAGAGCAAGAGCGATAAAAG
CATTTTGCACCGGTGTACCTCGCCGAGGCAAGCATGGGACGCTCTCCTTG
CGTGGTACGGCCCTCAGACGACGGGGGCCAAATCAGACCTCTCCCGACGC
CTTAACAGTTTTAAGATGGCGCCGGGGAGCAACCCGCTCGAGGAGATGAG
CAGGATCGAGGATCTTGCCGCGGAAATGCGAACAGCAGGAATGTCAGTAG
ACGACCACATGCTGTACACCATCTTTATTGGCGCTCTGCCTGCCGAATAC
GGAGTGGAGGCTCGGAACCTGGCATCACGTGACAGCATCGGCCGTGATGA
CATCATCAAGGCTGTTCGAGAACGGCATCACCAACTTTCTGGAAACAGGA
AGAAGGGGTCCAACGCTGGCCACGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67965:491..916-

>mRNA_M-pyrifera_M_contig67965.16394.1 ID=mRNA_M-pyrifera_M_contig67965.16394.1|Name=mRNA_M-pyrifera_M_contig67965.16394.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig67965:491..916- (Macrocystis pyrifera P11B4 male)
CTGGCATGGAATTTCCTGTCGACGGCCCTCAAGAGCAAGAGCGATAAAAG
CATTTTGCACCGGTGTACCTCGCCGAGGCAAGCATGGGACGCTCTCCTTG
CGTGGTACGGCCCTCAGACGACGGGGGCCAAATCAGACCTCTCCCGACGC
CTTAACAGTTTTAAGATGGCGCCGGGGAGCAACCCGCTCGAGGAGATGAG
CAGGATCGAGGATCTTGCCGCGGAAATGCGAACAGCAGGAATGTCAGTAG
ACGACCACATGCTGTACACCATCTTTATTGGCGCTCTGCCTGCCGAATAC
GGAGTGGAGGCTCGGAACCTGGCATCACGTGACAGCATCGGCCGTGATGA
CATCATCAAGGCTGTTCGAGAACGGCATCACCAACTTTCTGGAAACAGGA
AGAAGGGGTCCAACGCTGGCCACGCACTGGCATGGAATTTCCTGTCGACG
GCCCTCAAGAGCAAGAGCGATAAAAGCATTTTGCACCGGTGTACCTCGCC
GAGGCAAGCATGGGACGCTCTCCTTGCGTGGTACGGCCCTCAGACGACGG
GGGCCAAATCAGACCTCTCCCGACGCCTTAACAGTTTTAAGATGGCGCCG
GGGAGCAACCCGCTCGAGGAGATGAGCAGGATCGAGGATCTTGCCGCGGA
AATGCGAACAGCAGGAATGTCAGTAGACGACCACATGCTGTACACCATCT
TTATTGGCGCTCTGCCTGCCGAATACGGAGTGGAGGCTCGGAACCTGGCA
TCACGTGACAGCATCGGCCGTGATGACATCATCAAGGCTGTTCGAGAACG
GCATCACCAACTTTCTGGAAACAGGAAGAAGGGGTCCAACGCTGGCCACG
CA
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