mRNA_M-pyrifera_M_contig67936.16390.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67936.16390.1
Unique NamemRNA_M-pyrifera_M_contig67936.16390.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A7K1Z7A8_9ACTN (Transcription termination factor Rho n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z7A8_9ACTN)

HSP 1 Score: 467 bits (1201), Expect = 1.630e-159
Identity = 235/377 (62.33%), Postives = 297/377 (78.78%), Query Frame = 1
Query:   34 GRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAYAQDAA--GNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKI 1158
            GR+RE NK +++ W+G+ +PVAG+LELR EGYGFLRV+G LPSKDDAYVPVKMVR++ L KG HLSGTSRPA RNEKNPAM+E+ +VNGG PEA  +R  FD    V+P E +VFAG+QEP DPTAR++D+LTP G+GQRA++A  PR GKT +L+HL RS+E NH D+ELLVLL+DERPEDIT+MTRWV++GEVI + F+QP +EQIT+AEM IERAKR+VE GKDV ++VDG+TRLAR Y  +++  G  +   +D + VH  KRFLGAAR +EGGGSLT++ATI VDSD++ D AIYEELA TANLE+RLSRA A+RR+FP +DIG S T +EE L + AEL+  R+LRR L ++A         D+ ALL  I
Sbjct:  128 GRERENNKDTSDPWNGDVVPVAGYLELRPEGYGFLRVDGALPSKDDAYVPVKMVRQYNLDKGVHLSGTSRPAGRNEKNPAMVELLAVNGGPPEAATERVSFDEQVPVFPDERLVFAGSQEPEDPTARIVDMLTPLGRGQRALVASAPRAGKTTVLKHLVRSIEVNHTDVELLVLLVDERPEDITDMTRWVQRGEVIGSPFDQPTDEQITIAEMTIERAKRMVEDGKDVCLVVDGITRLARDYILESSHGGRSASGSIDRSVVHACKRFLGAARNIEGGGSLTVVATIVVDSDSSVDEAIYEELANTANLELRLSRALAVRRIFPAVDIGGSGTHNEEILLSPAELEQSRELRRRLMALASADDAAPGDDVLALLSDI 504          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A2E8LHP4_9ACTN (Transcription termination factor Rho n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LHP4_9ACTN)

HSP 1 Score: 391 bits (1004), Expect = 5.330e-129
Identity = 202/390 (51.79%), Postives = 280/390 (71.79%), Query Frame = 1
Query:    1 AESSGRKRRRRGRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            AE   R+RR  GR R+  +   E WDGEP+ V G L++R+EGYGFLR  G  PSK DAYV VK  R+FGLRKGDHL+G SRPANR+EKNPA++ I++VNGGKPE    R  F+ L  ++P E +    A +P++ TAR++DLL+P GKGQR ++  PP+ GKT +++ +ARS+E N+P+++L+VLL+DERPE++T+M RW+++GEV A+TF++P++E   +AE+ IERAKR+VESG+DVV+++DG+TRLARAY  A  A G      VD+  ++P KRF GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R  A RRV+P ID+ ASST HEE L    +L+ V  LRR L  +A D     +A L+ L+D++ T
Sbjct:  155 AEPGNRRRRXXGRGRD--EGPEEAWDGEPVXVEGFLDMRDEGYGFLRTSGYKPSKADAYVSVKQARQFGLRKGDHLTGASRPANRSEKNPALLRIDTVNGGKPEDAKGRPRFEDLTPLFPDERLHLEVADDPSNMTARIVDLLSPIGKGQRGLIVSPPKAGKTTVMKQIARSIEINNPEVKLIVLLVDERPEEVTDMRRWLQRGEVAASTFDRPSDEHTHIAEITIERAKRMVESGEDVVIILDGITRLARAYNLAAPATGRIMSGGVDSGALYPPKRFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRIAERRVYPAIDVNASSTRHEELLFERKQLNQVWKLRRVLNGLASDEGNSGAAGLELLIDRLKT 542          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A2E0ZUV1_9ACTN (Transcription termination factor Rho (Fragment) n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0ZUV1_9ACTN)

HSP 1 Score: 384 bits (987), Expect = 4.020e-128
Identity = 200/389 (51.41%), Postives = 276/389 (70.95%), Query Frame = 1
Query:    4 ESSGRKRRRRGRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            ES  R+RRRRGR +  +    EQWDGEP+ V G+L++R+EGYGFLR     PSK DAYV VK   ++GLRKGDHL+G SRPANR+E+NPA++ I++VNGGKPE    R  F+ L  ++P E +      +P + TAR++DLL P GKGQR +L  PP+ GKT IL+ +ARS+E N+P+++L+VLL+DERPE++T+M RW++  EV A+TF++P++E   +AE+ IERAKR+VESG DVV+L+DG+TRL+RAY  A  A G      +D+ +++P KRF GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R  A RRV+P ID+ ASST HEE L    +L+ V  LRR L  +A D     +A L+ L+D++ T
Sbjct:   33 ESGNRRRRRRGRGQ--SDGPEEQWDGEPVEVEGYLDMRDEGYGFLRTNNYKPSKADAYVSVKQAHQYGLRKGDHLTGASRPANRSERNPALLRIDTVNGGKPEDAKGRPRFEDLTPLFPDEHLKMETPDDPTNMTARIVDLLCPIGKGQRGLLVSPPKAGKTTILKQIARSIEVNNPEVKLIVLLVDERPEEVTDMRRWLKHSEVAASTFDRPSDEHTRIAEITIERAKRMVESGHDVVILLDGITRLSRAYNLAAPATGRIMSGGLDSGSLYPPKRFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRIAERRVYPAIDVNASSTRHEELLFQRNQLNQVWKLRRVLNGLAGDDGNSGAAGLELLIDRLKT 419          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A355DF71_9ACTN (Transcription termination factor Rho (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DF71_9ACTN)

HSP 1 Score: 383 bits (984), Expect = 6.540e-128
Identity = 199/390 (51.03%), Postives = 276/390 (70.77%), Query Frame = 1
Query:    1 AESSGRKRRRRGRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            AE   R+RRR GR RE ++A +E WDGEP+ V G+L+LR+EGYGFLR  G  PS DDAYV VK VR+  LRKGDHL+G SRPANR+EKNPA++ I++VN   PE    R  F+ L  ++P E +      + A+ TAR++DL++P GKGQR ++  PP+ GKT I++ +ARS+E NHP++ L+VLL+DERPE++T+M RW++ GEV+ +TF++P+ E   +AE+ IERAKRLVE G DVV+++DG+TRL+RAY  A  A G      +D   ++P K+F GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R  A RRV+P ID+ ASST HEE L    +L+ V  LRR L  +A+D  + A+A L+ L+D++ T
Sbjct:   12 AEPGNRRRRRSGRGRERDQAPDEAWDGEPVAVEGYLDLRDEGYGFLRANGFKPSADDAYVSVKQVRQLSLRKGDHLTGVSRPANRSEKNPALLRIDTVNTRPPEDAKKRPHFEDLTPLFPDEKLRLEVEGDSANMTARIVDLISPIGKGQRGLIVSPPKAGKTTIMKTIARSIEMNHPEVTLMVLLVDERPEEVTDMRRWLKSGEVMGSTFDRPSSEHTQLAEITIERAKRLVEYGADVVIILDGITRLSRAYNLAAPATGRIMSGGIDTGALYPPKKFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRIAERRVYPAIDVNASSTRHEELLFERKQLNQVWKLRRVLNGLANDGDSSAAASLELLIDRLKT 401          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A2E4AVW7_9ACTN (Transcription termination factor Rho n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4AVW7_9ACTN)

HSP 1 Score: 387 bits (994), Expect = 1.150e-127
Identity = 197/373 (52.82%), Postives = 273/373 (73.19%), Query Frame = 1
Query:   52 NKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            ++AS E WDGEP+PV G+++LR+EGYGFLR  G  PSK DAY+ VK VR+  LRKGD+L G SRP NR+EKNPA++ I++VNGG PE + DR  F+ L  ++P E +    + +P + TAR+IDLL+P GKGQR ++  PP+ GKT I++ +ARS+ETN+P+++L+VLL+DERPE++T+M RW+E GEV A+TF++P+EE   +AE+ IERAKR+VESG+DVV+++DG+TRL+RAY  A  A G      VD+  ++P KRF GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R  A RR++P ID+ ASST HEE L    +L+ V  LRR L  +A D T  A+A L+ L D++ T
Sbjct:  157 DQASEEPWDGEPVPVEGYVDLRDEGYGFLRTTGFKPSKTDAYISVKQVRQLNLRKGDYLVGGSRPPNRSEKNPALLRIDTVNGGDPEGIKDRPKFEDLTPLFPDEKLSMEISDDPGNMTARIIDLLSPIGKGQRGLIVSPPKAGKTTIMKQIARSIETNNPEVKLIVLLVDERPEEVTDMQRWLENGEVAASTFDRPSEEHTQIAELTIERAKRMVESGEDVVIILDGITRLSRAYNLAAPATGRIMSGGVDSGALYPPKRFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRIAERRIYPAIDVDASSTRHEELLFERKQLNQVWKLRRVLNGLATD-TGGAAAGLELLTDRLKT 528          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A7X5WUQ8_9ACTN (Transcription termination factor Rho (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WUQ8_9ACTN)

HSP 1 Score: 374 bits (961), Expect = 1.070e-126
Identity = 178/248 (71.77%), Postives = 216/248 (87.10%), Query Frame = 1
Query:   16 RKRRRRGRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY 759
            R+RRRRGR+RE N+ +NE WDGEPIPVAGHLELR+EGYGFLRV+G LPSKDDAYVPVKMVR+FGLR+GDHL+G SRPANRNEKNPAM+E+ +VNGG PEA  DR DFD L +V+P+E IV AG Q P DPTARVIDLLTP GKGQRA++A PPRTG+T +L+H+ R+LE NHP+++L V+LLDERPED+T+M  WV KGEV A+ F++P EEQ TVAEM +ERAKR+VE G+DVV+++DG+TRLARAY
Sbjct:    2 RRRRRRGRERENNRDTNEAWDGEPIPVAGHLELRSEGYGFLRVDGALPSKDDAYVPVKMVRQFGLRRGDHLTGASRPANRNEKNPAMVEVATVNGGPPEAAVDRPDFDGLVSVFPNERIVLAGDQAPEDPTARVIDLLTPIGKGQRALVAAPPRTGETTLLKHVIRALEHNHPELDLFVVLLDERPEDVTDMQEWVTKGEVAASAFDRPTEEQTTVAEMTMERAKRMVEDGRDVVVVLDGITRLARAY 249          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A3M2H4F5_ACTSX (Transcription termination factor Rho n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H4F5_ACTSX)

HSP 1 Score: 386 bits (991), Expect = 1.160e-126
Identity = 193/363 (53.17%), Postives = 270/363 (74.38%), Query Frame = 1
Query:   82 EPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            EP+PVAG+LELR+EGYGF+R +G LPSK+DAYVPVKMVR++GLRKGDH++GTSRPA R EKNPA++ IESVNG  P+   +R  F+ L  ++P E +V     +P + TAR+IDL+ P GKGQR ++  PP+ GKT +++++ARS+ETN+P++ ++VLL+DERPE++T+M RW+++GEV+A+TF++P++E   VAEM IERAKR+VE GKDV +++DG+TRLARAY  A  A G      +D   ++P K+F GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R AA RR++P ID+ ASST HEE L    +L  V  LRR L+ +A D  + A  +L  L+D++ T
Sbjct:  211 EPVPVAGYLELRDEGYGFVRTKGYLPSKEDAYVPVKMVRQYGLRKGDHITGTSRPAGRKEKNPALLTIESVNGDDPDKARNRPRFEDLTPLFPDEKLVQEMPDDPMNMTARIIDLIAPIGKGQRGLIVSPPKAGKTTVMKNIARSIETNNPEVHVIVLLVDERPEEVTDMRRWLQRGEVVASTFDRPSDEHTLVAEMTIERAKRMVEYGKDVCIILDGITRLARAYNLAAPATGRIMSGGIDTGALYPPKKFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRAAERRIYPAIDVDASSTRHEELLFERKQLQQVWKLRRVLSGLASDGGSGAGLEL--LIDRLKT 571          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A2E5NU50_9ACTN (Transcription termination factor Rho n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NU50_9ACTN)

HSP 1 Score: 384 bits (986), Expect = 1.800e-126
Identity = 197/379 (51.98%), Postives = 271/379 (71.50%), Query Frame = 1
Query:   34 GRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            GRDR+      + WDGEP+ V G+L+LR EGYGFLR  G  PSK DAYV VK VR+FGLR+GDHL G SRPANR+EKNPA++ I+ VNG  PE   DR  F+ L  ++P E +      +P D TAR+IDLL+P GKGQR ++  PP+ GKT I++ + RS+ETNHP+++L+VLL+DERPE++T+M RW+++GEV+ +TF++P++E   +AE+ IERAKR+VE G+DVV+++DG+TRL+RAY  A  A G      VD+  ++P KRF GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R  A RR++P ID+ ASST HEE L    +L+ V  LRR L  +A+D    A+A L+ L+D++ T
Sbjct:  151 GRDRDHG--PEDPWDGEPVDVVGYLDLRVEGYGFLRTVGFKPSKKDAYVSVKQVRQFGLRRGDHLVGASRPANRSEKNPALLRIDQVNGRDPEQAKDRPRFEDLTPLFPDEKLRMEIDGDPTDMTARIIDLLSPVGKGQRGMIVSPPKAGKTTIMKSIVRSIETNHPEVKLIVLLVDERPEEVTDMRRWLQRGEVVGSTFDRPSDEHTQLAEVTIERAKRMVEYGEDVVIMLDGITRLSRAYNLAAPATGRIMSGGVDSGALYPPKRFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRIAERRIYPAIDVNASSTRHEELLFERKQLNQVWKLRRVLNGLANDGDASAAAGLELLIDRLKT 527          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A2E8NAQ5_9ACTN (Transcription termination factor Rho n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8NAQ5_9ACTN)

HSP 1 Score: 383 bits (983), Expect = 6.290e-126
Identity = 199/390 (51.03%), Postives = 275/390 (70.51%), Query Frame = 1
Query:    1 AESSGRKRRRRGRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKIAT 1164
            AE   R+RRRRGRD +      E WDGEP+ V G+L+LR+EGYGFLR  G  PSK DAYV VK VR+ GLR+GDHL G SRPANR+EK PA++ I+ VN   PE   DR  F+ L  ++P E +      +P + TAR+IDLL+P GKGQR ++  PP+ GKT I++ + RS+ETNHP+++L+VLL+DERPE++T+M RW+++GEV+ +TF++P++E   +AE+ IERAKR+VE G+DVV+++DG+TRL+RAY  A  A G      VD+  ++P KRF GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R  A RR++P ID+  SST HEE L    +L+ V  LRR L  +A+D    A+A L+ L+D++ T
Sbjct:  147 AEPGNRRRRRRGRDHDQR--PEEPWDGEPVDVEGYLDLRDEGYGFLRTSGFKPSKKDAYVSVKQVRQLGLRRGDHLVGASRPANRSEKXPALLRIDKVNDRDPEQAKDRPRFEDLTPLFPDEKLRMEVDGDPTNMTARIIDLLSPVGKGQRGMIVSPPKAGKTTIMKSIVRSIETNHPEVKLIVLLVDERPEEVTDMXRWLQRGEVVGSTFDRPSDEHTALAEVTIERAKRMVEYGEDVVIVLDGITRLSRAYNLAAPATGRIMSGGVDSGALYPPKRFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRIAERRIYPAIDVNGSSTRHEELLFERKQLNQVWKLRRVLNGLANDGDAAAAAGLELLIDRLKT 534          
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Match: A0A520Y2W0_9ACTN (Transcription termination factor Rho n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y2W0_9ACTN)

HSP 1 Score: 381 bits (979), Expect = 9.450e-126
Identity = 199/366 (54.37%), Postives = 262/366 (71.58%), Query Frame = 1
Query:   67 EQWDGEPIPVAGHLELRNEGYGFLRVEGPLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNGGKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQRAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRWVEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLARAY--AQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDSDAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRTDAELDTVRDLRRELASIADDPTTEASADLQALLDKI 1158
            E WDGEP+ V G L+LR++GYGFLRV G   +KDDAYV VK VR+ GLRKGDHL GTSRPANRNEKNPAM+ I SVNG   E   DR  FD L  ++P E +V     EP + TAR+IDLL P GKGQR ++  PP+ GKT I++++ RS+ETN+PD+ L+VLL+DERPE++T+M RW+  GEV A+TF++PA+E   +AE+ IERAKR+VESG+DVV+++DG+TRLARAY  A  A G      VD+  ++P K+F GAAR +E GGSLT+LAT  V++ +  D  I+EE  GT N+E+RL R +A RR++P ID+ ASST  EE L    +LD V  LRR L+ +A D      A L+ L+D++
Sbjct:  137 ESWDGEPVNVEGFLDLRDDGYGFLRVGGFKGTKDDAYVSVKQVRQHGLRKGDHLVGTSRPANRNEKNPAMLTIASVNGDDAEKAKDRPRFDDLTPLFPDEKLVQEMPGEPDNMTARIIDLLCPIGKGQRGLIVSPPKAGKTTIMKNITRSIETNNPDVHLIVLLVDERPEEVTDMKRWLLNGEVAASTFDRPADEHTALAEITIERAKRMVESGRDVVIILDGITRLARAYNLAAPATGRVMSGGVDSGALYPPKKFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRSAERRIYPAIDVDASSTRQEELLFEPKQLDQVWKLRRVLSGMAGDGDKGPGAGLELLMDRL 502          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67936.16390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1Z7A8_9ACTN1.630e-15962.33Transcription termination factor Rho n=2 Tax=Acidi... [more]
A0A2E8LHP4_9ACTN5.330e-12951.79Transcription termination factor Rho n=2 Tax=Acidi... [more]
A0A2E0ZUV1_9ACTN4.020e-12851.41Transcription termination factor Rho (Fragment) n=... [more]
A0A355DF71_9ACTN6.540e-12851.03Transcription termination factor Rho (Fragment) n=... [more]
A0A2E4AVW7_9ACTN1.150e-12752.82Transcription termination factor Rho n=3 Tax=Actin... [more]
A0A7X5WUQ8_9ACTN1.070e-12671.77Transcription termination factor Rho (Fragment) n=... [more]
A0A3M2H4F5_ACTSX1.160e-12653.17Transcription termination factor Rho n=1 Tax=Actin... [more]
A0A2E5NU50_9ACTN1.800e-12651.98Transcription termination factor Rho n=3 Tax=Acidi... [more]
A0A2E8NAQ5_9ACTN6.290e-12651.03Transcription termination factor Rho n=2 Tax=Acidi... [more]
A0A520Y2W0_9ACTN9.450e-12654.37Transcription termination factor Rho n=1 Tax=Acidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67936contigM-pyrifera_M_contig67936:81..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score368.6
Seed ortholog evalue3.5e-99
Seed eggNOG ortholog1313172.YM304_10360
Preferred namerho
KEGG koko:K02887,ko:K03628
KEGG Pathwayko03010,ko03018,map03010,map03018
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
EggNOG OGs2GIWY@201174,4CMS7@84992,COG1158@1,COG1158@2
COG Functional cat.K
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03021
Exons1
Model size1170
Cds size1170
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.6910532-CDS-M-pyrifera_M_contig67936:80..12501622816570.6910532-CDS-M-pyrifera_M_contig67936:80..1250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67936 81..1250 -
1692278053.0708768-CDS-M-pyrifera_M_contig67936:80..12501692278053.0708768-CDS-M-pyrifera_M_contig67936:80..1250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67936 81..1250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67936.16390.1prot_M-pyrifera_M_contig67936.16390.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67936 81..1250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67936.16390.1

>prot_M-pyrifera_M_contig67936.16390.1 ID=prot_M-pyrifera_M_contig67936.16390.1|Name=mRNA_M-pyrifera_M_contig67936.16390.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=390bp
AESSGRKRRRRGRDREANKASNEQWDGEPIPVAGHLELRNEGYGFLRVEG
PLPSKDDAYVPVKMVREFGLRKGDHLSGTSRPANRNEKNPAMIEIESVNG
GKPEAVADRTDFDALPAVYPSEPIVFAGAQEPADPTARVIDLLTPFGKGQ
RAVLAGPPRTGKTAILQHLARSLETNHPDIELLVLLLDERPEDITEMTRW
VEKGEVIAATFEQPAEEQITVAEMVIERAKRLVESGKDVVMLVDGVTRLA
RAYAQDAAGNRSGVVVDATTVHPAKRFLGAARCLEGGGSLTMLATITVDS
DAAADAAIYEELAGTANLEIRLSRAAAIRRVFPPIDIGASSTVHEERLRT
DAELDTVRDLRRELASIADDPTTEASADLQALLDKIATA*
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mRNA from alignment at M-pyrifera_M_contig67936:81..1250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67936.16390.1 ID=mRNA_M-pyrifera_M_contig67936.16390.1|Name=mRNA_M-pyrifera_M_contig67936.16390.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig67936:81..1250- (Macrocystis pyrifera P11B4 male)
GCCGAGTCCAGCGGTCGGAAGCGTCGTCGCCGCGGCCGCGACCGCGAGGC CAACAAGGCCTCCAACGAGCAGTGGGACGGCGAGCCGATCCCGGTGGCCG GCCATCTCGAGCTGCGCAACGAGGGCTATGGCTTCTTGCGGGTCGAGGGA CCGCTCCCGTCGAAGGACGATGCCTACGTGCCGGTGAAGATGGTTCGTGA GTTCGGCCTTCGCAAGGGCGACCACCTCTCGGGCACCTCTCGCCCCGCCA ATCGGAACGAGAAGAATCCGGCGATGATCGAGATCGAGTCGGTCAACGGT GGCAAGCCTGAAGCGGTTGCCGACCGGACCGACTTCGATGCCCTTCCCGC CGTCTACCCCAGCGAGCCGATCGTGTTCGCCGGCGCACAGGAGCCGGCCG ATCCGACTGCTCGGGTGATCGACCTGCTGACGCCGTTCGGCAAGGGTCAA CGCGCCGTGCTCGCCGGTCCGCCCCGCACCGGCAAGACCGCGATCCTCCA GCATCTCGCCCGTTCGCTCGAGACGAATCATCCCGACATCGAACTCCTGG TCCTCCTGCTCGACGAGCGGCCCGAGGACATCACCGAGATGACCCGCTGG GTCGAGAAGGGCGAGGTCATCGCCGCCACCTTCGAACAGCCGGCCGAAGA GCAGATCACCGTCGCCGAGATGGTGATCGAGCGGGCCAAACGACTGGTGG AGTCCGGCAAGGACGTCGTCATGTTGGTCGACGGGGTCACCCGCCTGGCG CGCGCCTACGCCCAGGACGCGGCCGGCAACCGATCTGGAGTTGTGGTCGA CGCCACCACCGTGCATCCGGCCAAGCGGTTCCTCGGCGCGGCCCGATGTC TCGAAGGCGGAGGCTCGCTCACCATGCTCGCCACCATCACGGTCGACTCC GACGCCGCAGCCGATGCCGCCATCTACGAAGAACTGGCCGGCACCGCCAA CCTCGAGATCCGCCTGTCTCGCGCCGCGGCGATTCGTCGGGTGTTCCCGC CGATCGACATCGGCGCGTCCTCGACGGTCCACGAAGAGCGCCTGCGCACC GACGCCGAACTCGACACCGTCAGGGATCTTCGTCGCGAGCTCGCGTCGAT CGCCGACGATCCGACCACCGAAGCCTCGGCCGATCTCCAGGCCCTGCTCG ACAAGATCGCCACTGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67936:81..1250-

>mRNA_M-pyrifera_M_contig67936.16390.1 ID=mRNA_M-pyrifera_M_contig67936.16390.1|Name=mRNA_M-pyrifera_M_contig67936.16390.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2340bp|location=Sequence derived from alignment at M-pyrifera_M_contig67936:81..1250- (Macrocystis pyrifera P11B4 male)
GCCGAGTCCAGCGGTCGGAAGCGTCGTCGCCGCGGCCGCGACCGCGAGGC
CAACAAGGCCTCCAACGAGCAGTGGGACGGCGAGCCGATCCCGGTGGCCG
GCCATCTCGAGCTGCGCAACGAGGGCTATGGCTTCTTGCGGGTCGAGGGA
CCGCTCCCGTCGAAGGACGATGCCTACGTGCCGGTGAAGATGGTTCGTGA
GTTCGGCCTTCGCAAGGGCGACCACCTCTCGGGCACCTCTCGCCCCGCCA
ATCGGAACGAGAAGAATCCGGCGATGATCGAGATCGAGTCGGTCAACGGT
GGCAAGCCTGAAGCGGTTGCCGACCGGACCGACTTCGATGCCCTTCCCGC
CGTCTACCCCAGCGAGCCGATCGTGTTCGCCGGCGCACAGGAGCCGGCCG
ATCCGACTGCTCGGGTGATCGACCTGCTGACGCCGTTCGGCAAGGGTCAA
CGCGCCGTGCTCGCCGGTCCGCCCCGCACCGGCAAGACCGCGATCCTCCA
GCATCTCGCCCGTTCGCTCGAGACGAATCATCCCGACATCGAACTCCTGG
TCCTCCTGCTCGACGAGCGGCCCGAGGACATCACCGAGATGACCCGCTGG
GTCGAGAAGGGCGAGGTCATCGCCGCCACCTTCGAACAGCCGGCCGAAGA
GCAGATCACCGTCGCCGAGATGGTGATCGAGCGGGCCAAACGACTGGTGG
AGTCCGGCAAGGACGTCGTCATGTTGGTCGACGGGGTCACCCGCCTGGCG
CGCGCCTACGCCCAGGACGCGGCCGGCAACCGATCTGGAGTTGTGGTCGA
CGCCACCACCGTGCATCCGGCCAAGCGGTTCCTCGGCGCGGCCCGATGTC
TCGAAGGCGGAGGCTCGCTCACCATGCTCGCCACCATCACGGTCGACTCC
GACGCCGCAGCCGATGCCGCCATCTACGAAGAACTGGCCGGCACCGCCAA
CCTCGAGATCCGCCTGTCTCGCGCCGCGGCGATTCGTCGGGTGTTCCCGC
CGATCGACATCGGCGCGTCCTCGACGGTCCACGAAGAGCGCCTGCGCACC
GACGCCGAACTCGACACCGTCAGGGATCTTCGTCGCGAGCTCGCGTCGAT
CGCCGACGATCCGACCACCGAAGCCTCGGCCGATCTCCAGGCCCTGCTCG
ACAAGATCGCCACTGCGTAGGCCGAGTCCAGCGGTCGGAAGCGTCGTCGC
CGCGGCCGCGACCGCGAGGCCAACAAGGCCTCCAACGAGCAGTGGGACGG
CGAGCCGATCCCGGTGGCCGGCCATCTCGAGCTGCGCAACGAGGGCTATG
GCTTCTTGCGGGTCGAGGGACCGCTCCCGTCGAAGGACGATGCCTACGTG
CCGGTGAAGATGGTTCGTGAGTTCGGCCTTCGCAAGGGCGACCACCTCTC
GGGCACCTCTCGCCCCGCCAATCGGAACGAGAAGAATCCGGCGATGATCG
AGATCGAGTCGGTCAACGGTGGCAAGCCTGAAGCGGTTGCCGACCGGACC
GACTTCGATGCCCTTCCCGCCGTCTACCCCAGCGAGCCGATCGTGTTCGC
CGGCGCACAGGAGCCGGCCGATCCGACTGCTCGGGTGATCGACCTGCTGA
CGCCGTTCGGCAAGGGTCAACGCGCCGTGCTCGCCGGTCCGCCCCGCACC
GGCAAGACCGCGATCCTCCAGCATCTCGCCCGTTCGCTCGAGACGAATCA
TCCCGACATCGAACTCCTGGTCCTCCTGCTCGACGAGCGGCCCGAGGACA
TCACCGAGATGACCCGCTGGGTCGAGAAGGGCGAGGTCATCGCCGCCACC
TTCGAACAGCCGGCCGAAGAGCAGATCACCGTCGCCGAGATGGTGATCGA
GCGGGCCAAACGACTGGTGGAGTCCGGCAAGGACGTCGTCATGTTGGTCG
ACGGGGTCACCCGCCTGGCGCGCGCCTACGCCCAGGACGCGGCCGGCAAC
CGATCTGGAGTTGTGGTCGACGCCACCACCGTGCATCCGGCCAAGCGGTT
CCTCGGCGCGGCCCGATGTCTCGAAGGCGGAGGCTCGCTCACCATGCTCG
CCACCATCACGGTCGACTCCGACGCCGCAGCCGATGCCGCCATCTACGAA
GAACTGGCCGGCACCGCCAACCTCGAGATCCGCCTGTCTCGCGCCGCGGC
GATTCGTCGGGTGTTCCCGCCGATCGACATCGGCGCGTCCTCGACGGTCC
ACGAAGAGCGCCTGCGCACCGACGCCGAACTCGACACCGTCAGGGATCTT
CGTCGCGAGCTCGCGTCGATCGCCGACGATCCGACCACCGAAGCCTCGGC
CGATCTCCAGGCCCTGCTCGACAAGATCGCCACTGCGTAG
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