mRNA_M-pyrifera_M_contig67933.16388.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67933.16388.1
Unique NamemRNA_M-pyrifera_M_contig67933.16388.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: A0A7S3V2I0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V2I0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.400e-25
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   13 LPSLSPHLYFLSRVAEGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHK 282
            LP  +  L + +   EGV+V KK PAK  HD I V NL VMKLM S+ S+ +VRE+++W+W Y+ LT+EG+EYLR YL + E+++PATHK
Sbjct:    3 LPKKNRLLVYTALFKEGVLVAKKDPAKPKHDTIDVPNLHVMKLMLSLKSRGYVRETFSWQWYYWYLTEEGIEYLREYLHLPEEIVPATHK 92
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: G8JVG8_ERECY (S10_plectin domain-containing protein n=10 Tax=Saccharomycetaceae TaxID=4893 RepID=G8JVG8_ERECY)

HSP 1 Score: 89.4 bits (220), Expect = 1.250e-20
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:   58 EGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQRAE 303
            +GV+V KK   +  HD I  +NL+V+K ++S+TSK FV+  ++W++ YYTLT+EGVEYLR YLG+ E+V+P T+  LA R++
Sbjct:   18 DGVLVAKKDFNQPKHDEIDTKNLYVIKALQSLTSKGFVKTQFSWQYYYYTLTEEGVEYLRNYLGLPENVVPGTY--LADRSQ 97
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: Q752K5_ASHGO (AFR569Wp n=2 Tax=Eremothecium TaxID=33170 RepID=Q752K5_ASHGO)

HSP 1 Score: 88.2 bits (217), Expect = 3.560e-20
Identity = 40/83 (48.19%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   58 EGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQRAEA 306
            +GV+V KK   +  HD I  +NL+V+K ++S+TSK +V+  ++W++ YYTLT+EGVEYLR YLG+ E+VIP T+  +A R+++
Sbjct:   18 DGVLVAKKDFNQPKHDEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLRNYLGLPENVIPGTY--MADRSQS 98
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: Q6FJN5_CANGA (S10_plectin domain-containing protein n=2 Tax=Candida glabrata TaxID=5478 RepID=Q6FJN5_CANGA)

HSP 1 Score: 88.2 bits (217), Expect = 3.560e-20
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   58 EGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQRAE 303
            EGV+V KK   +  HD I  +NL+V+K ++S+TSK +V+  ++W++ YYTLT+EGVEYLR YL + E ++P T+   AQ+A+
Sbjct:   18 EGVVVAKKDFNQPKHDEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQNAQQAQ 99
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: C4Y8M7_CLAL4 (S10_plectin domain-containing protein n=1 Tax=Clavispora lusitaniae (strain ATCC 42720) TaxID=306902 RepID=C4Y8M7_CLAL4)

HSP 1 Score: 89.4 bits (220), Expect = 3.750e-20
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 LYFHLPSLSPHLYFLSRVAEGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPAT 276
            LY  +P   P    + +  EGV+V KK   +  H+ I  RNL+V+K ++S+TSK FV+  ++W++ YYTLTDEGVEYLR+ L I E ++P T
Sbjct:   22 LYTRVPKREPESSHMHQAREGVVVAKKDFDQPKHEEIDTRNLYVIKALQSLTSKGFVKTQFSWQYYYYTLTDEGVEYLRSELNIPEGILPMT 113
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: A0A0D7A8H7_9AGAR (40S ribosomal protein S10 n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7A8H7_9AGAR)

HSP 1 Score: 89.4 bits (220), Expect = 4.490e-20
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   58 EGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQ 294
            EGV+V KK      HD++ V NL ++K M+S+TSK FV+  ++W+W YYTLT EGV+YLR YL +  +++PATHK  A+
Sbjct:   18 EGVLVAKKDYNAPKHDDLDVPNLHLIKAMQSLTSKGFVKTQFSWQWYYYTLTPEGVDYLREYLHLPAEIVPATHKKAAR 96
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: A0A4T0WZS1_9ASCO (S10_plectin domain-containing protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0WZS1_9ASCO)

HSP 1 Score: 87.8 bits (216), Expect = 8.000e-20
Identity = 41/90 (45.56%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   40 FLSRVAEGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPAT--HKPLAQRAE 303
            F++   +GV+V KK   +  HD + V+NL+V+K M+S+TSK FV+  ++W++ YYTLTDEG+E+LR +LG+ E ++PAT   +P+ QR +
Sbjct:   12 FMALFKDGVLVAKK-DYEIQHDALNVKNLYVIKAMQSLTSKGFVKTQFSWQYYYYTLTDEGLEFLREFLGVPEGIVPATLMEQPIPQREQ 100
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: A0A1E3PRB4_9ASCO (S10_plectin domain-containing protein n=2 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PRB4_9ASCO)

HSP 1 Score: 88.2 bits (217), Expect = 9.570e-20
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   31 HLYFLSRVAEGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATH 279
            H+Y      EGV+V KK   +  H+ I  RNL+V+K ++S+TSK FV+  ++W + YYTLTDEGVEYLR +L + ++++PATH
Sbjct:   12 HVYLFK---EGVVVAKKDFDQPKHEEIDTRNLYVIKALQSLTSKGFVKTRFSWNYYYYTLTDEGVEYLREWLHLPQEIVPATH 91
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: A0A2T0FFQ8_9ASCO (40S ribosomal protein S10-A n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FFQ8_9ASCO)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-19
Identity = 38/83 (45.78%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   58 EGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQRAEA 306
            EGV+V KK   +  H+ + ++NL+V+K M+S+ S+ +V+  ++W++ YYTLTDEGVEYLR +L + E+++PATHK   + A A
Sbjct:   18 EGVLVAKKDFNQPKHEELDIKNLYVVKAMQSLDSRGYVKTRFSWQYYYYTLTDEGVEYLREWLHLPENIVPATHKATREEALA 100
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BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Match: Q6CC88_YARLI (YALI0C11473p n=3 Tax=Yarrowia lipolytica TaxID=4952 RepID=Q6CC88_YARLI)

HSP 1 Score: 89.0 bits (219), Expect = 1.370e-19
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   58 EGVIVVKKAPAKASHDNIPVRNLFVMKLMRSMTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQRAEA 306
            +GV V KK   +  H++I  +NL+V+K ++S+TSK FV+  ++W++ YYTLTDEGVEYLR YL + E V+P THK  A+   A
Sbjct:   65 QGVCVAKKDFNQPKHEDIDTKNLYVIKALQSLTSKGFVKTQFSWQYYYYTLTDEGVEYLREYLHLPEGVVPETHKKTAREETA 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67933.16388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3V2I0_9STRA7.400e-2552.22Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
G8JVG8_ERECY1.250e-2050.00S10_plectin domain-containing protein n=10 Tax=Sac... [more]
Q752K5_ASHGO3.560e-2048.19AFR569Wp n=2 Tax=Eremothecium TaxID=33170 RepID=Q7... [more]
Q6FJN5_CANGA3.560e-2047.56S10_plectin domain-containing protein n=2 Tax=Cand... [more]
C4Y8M7_CLAL43.750e-2045.65S10_plectin domain-containing protein n=1 Tax=Clav... [more]
A0A0D7A8H7_9AGAR4.490e-2050.6340S ribosomal protein S10 n=1 Tax=Fistulina hepati... [more]
A0A4T0WZS1_9ASCO8.000e-2045.56S10_plectin domain-containing protein n=1 Tax=[Can... [more]
A0A1E3PRB4_9ASCO9.570e-2048.19S10_plectin domain-containing protein n=2 Tax=Nads... [more]
A0A2T0FFQ8_9ASCO1.100e-1945.7840S ribosomal protein S10-A n=1 Tax=Wickerhamiella... [more]
Q6CC88_YARLI1.370e-1949.40YALI0C11473p n=3 Tax=Yarrowia lipolytica TaxID=495... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67933contigM-pyrifera_M_contig67933:13..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score90.1
Seed ortholog evalue8.2e-16
Seed eggNOG ortholog45285.XP_003647464.1
KEGG koko:K02947
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031503,GO:0032991,GO:0033036,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0097064,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.to Saccharomyces cerevisiae RPS10B (YMR230W) and RPS10A (YOR293W)
EggNOG OGs3A3IE@33154,3P3VQ@4751,3QMD2@4890,3RUWP@4891,3S1DT@4893,COG5045@1,KOG3344@2759
COG Functional cat.J
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.617139-CDS-M-pyrifera_M_contig67933:12..4051622816570.617139-CDS-M-pyrifera_M_contig67933:12..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67933 13..405 +
1692278053.0411234-CDS-M-pyrifera_M_contig67933:12..4051692278053.0411234-CDS-M-pyrifera_M_contig67933:12..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67933 13..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67933.16388.1prot_M-pyrifera_M_contig67933.16388.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67933 13..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67933.16388.1

>prot_M-pyrifera_M_contig67933.16388.1 ID=prot_M-pyrifera_M_contig67933.16388.1|Name=mRNA_M-pyrifera_M_contig67933.16388.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
LYFHLPSLSPHLYFLSRVAEGVIVVKKAPAKASHDNIPVRNLFVMKLMRS
MTSKKFVRESYNWRWLYYTLTDEGVEYLRTYLGIAEDVIPATHKPLAQRA
EAAEGLEGGRGGRGGFGRGRGGGRGGDGYRR
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mRNA from alignment at M-pyrifera_M_contig67933:13..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67933.16388.1 ID=mRNA_M-pyrifera_M_contig67933.16388.1|Name=mRNA_M-pyrifera_M_contig67933.16388.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig67933:13..405+ (Macrocystis pyrifera P11B4 male)
TTGTATTTCCACCTTCCCTCTCTTTCACCCCACCTATACTTTCTTTCTCG
TGTTGCAGAGGGTGTGATTGTGGTGAAGAAGGCTCCAGCCAAGGCGAGCC
ACGACAACATTCCTGTTCGCAACTTGTTCGTGATGAAGCTGATGCGTTCG
ATGACGAGCAAGAAGTTTGTGCGGGAGAGCTACAACTGGCGCTGGCTGTA
CTACACGTTGACGGACGAGGGGGTGGAGTACCTGCGCACCTACCTGGGAA
TCGCCGAAGACGTGATCCCAGCCACCCACAAGCCACTCGCACAACGCGCC
GAGGCAGCTGAGGGCCTCGAAGGAGGCCGCGGAGGTCGCGGGGGCTTCGG
CCGGGGCCGAGGAGGTGGACGTGGAGGCGATGGCTACCGCCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67933:13..405+

>mRNA_M-pyrifera_M_contig67933.16388.1 ID=mRNA_M-pyrifera_M_contig67933.16388.1|Name=mRNA_M-pyrifera_M_contig67933.16388.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig67933:13..405+ (Macrocystis pyrifera P11B4 male)
TTGTATTTCCACCTTCCCTCTCTTTCACCCCACCTATACTTTCTTTCTCG
TGTTGCAGAGGGTGTGATTGTGGTGAAGAAGGCTCCAGCCAAGGCGAGCC
ACGACAACATTCCTGTTCGCAACTTGTTCGTGATGAAGCTGATGCGTTCG
ATGACGAGCAAGAAGTTTGTGCGGGAGAGCTACAACTGGCGCTGGCTGTA
CTACACGTTGACGGACGAGGGGGTGGAGTACCTGCGCACCTACCTGGGAA
TCGCCGAAGACGTGATCCCAGCCACCCACAAGCCACTCGCACAACGCGCC
GAGGCAGCTGAGGGCCTCGAAGGAGGCCGCGGAGGTCGCGGGGGCTTCGG
CCGGGGCCGAGGAGGTGGACGTGGAGGCGATGGCTACCGCCGTTTGTATT
TCCACCTTCCCTCTCTTTCACCCCACCTATACTTTCTTTCTCGTGTTGCA
GAGGGTGTGATTGTGGTGAAGAAGGCTCCAGCCAAGGCGAGCCACGACAA
CATTCCTGTTCGCAACTTGTTCGTGATGAAGCTGATGCGTTCGATGACGA
GCAAGAAGTTTGTGCGGGAGAGCTACAACTGGCGCTGGCTGTACTACACG
TTGACGGACGAGGGGGTGGAGTACCTGCGCACCTACCTGGGAATCGCCGA
AGACGTGATCCCAGCCACCCACAAGCCACTCGCACAACGCGCCGAGGCAG
CTGAGGGCCTCGAAGGAGGCCGCGGAGGTCGCGGGGGCTTCGGCCGGGGC
CGAGGAGGTGGACGTGGAGGCGATGGCTACCGCCGT
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