mRNA_M-pyrifera_M_contig6791.16383.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6791.16383.1
Unique NamemRNA_M-pyrifera_M_contig6791.16383.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6791.16383.1 vs. uniprot
Match: D7G1P0_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.270e-13
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   91 QSVCFNNCSGRGRCVDYACECDVGYDGDDCSF 186
            QSVCFNNCSGRGRC+DY CECD GYDGDDCSF
Sbjct:   38 QSVCFNNCSGRGRCIDYTCECDAGYDGDDCSF 69
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BLAST of mRNA_M-pyrifera_M_contig6791.16383.1 vs. uniprot
Match: A0A6H5LBD4_9PHAE (EGF-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBD4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-12
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   91 QSVCFNNCSGRGRCVDYACECDVGYDGDDCSF 186
            QSVCFNNCSG GRC+DY CECD GYDGDDCSF
Sbjct:   40 QSVCFNNCSGHGRCIDYTCECDAGYDGDDCSF 71
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BLAST of mRNA_M-pyrifera_M_contig6791.16383.1 vs. uniprot
Match: A0A7S2RV49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV49_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.180e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   73 EEVNNTQSVCFNNCSGRGRCVDYACECDVGYDGDDCSF 186
            E V++  SVCFN+CSG G CVD++CEC +GY GDDC +
Sbjct:   38 ESVDSGGSVCFNDCSGHGHCVDFSCECFLGYFGDDCRY 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6791.16383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1P0_ECTSI2.270e-1390.63EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5LBD4_9PHAE1.090e-1287.50EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2RV49_9STRA8.180e-860.53Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6791contigM-pyrifera_M_contig6791:8774..8959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7G1P0
KEGG koko:K01829,ko:K09580,ko:K10758,ko:K13996
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
EC1.8.3.2,5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.4080014-CDS-M-pyrifera_M_contig6791:8773..89591622816570.4080014-CDS-M-pyrifera_M_contig6791:8773..8959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6791 8774..8959 +
1692278052.9668946-CDS-M-pyrifera_M_contig6791:8773..89591692278052.9668946-CDS-M-pyrifera_M_contig6791:8773..8959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6791 8774..8959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6791.16383.1prot_M-pyrifera_M_contig6791.16383.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6791 8774..8959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6791.16383.1

>prot_M-pyrifera_M_contig6791.16383.1 ID=prot_M-pyrifera_M_contig6791.16383.1|Name=mRNA_M-pyrifera_M_contig6791.16383.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MRDHSYIFSNLDPSAGSLEGTVSPEEVNNTQSVCFNNCSGRGRCVDYACE
CDVGYDGDDCSF
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mRNA from alignment at M-pyrifera_M_contig6791:8774..8959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6791.16383.1 ID=mRNA_M-pyrifera_M_contig6791.16383.1|Name=mRNA_M-pyrifera_M_contig6791.16383.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig6791:8774..8959+ (Macrocystis pyrifera P11B4 male)
ATGCGCGACCACTCATACATATTTTCAAACCTTGATCCATCTGCAGGTAG
CCTGGAAGGAACGGTGTCTCCGGAAGAGGTAAATAACACGCAGTCGGTAT
GCTTCAACAACTGTTCAGGACGCGGGCGATGCGTGGATTACGCTTGCGAA
TGCGACGTGGGCTACGACGGCGACGACTGCAGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6791:8774..8959+

>mRNA_M-pyrifera_M_contig6791.16383.1 ID=mRNA_M-pyrifera_M_contig6791.16383.1|Name=mRNA_M-pyrifera_M_contig6791.16383.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig6791:8774..8959+ (Macrocystis pyrifera P11B4 male)
ATGCGCGACCACTCATACATATTTTCAAACCTTGATCCATCTGCAGGTAG
CCTGGAAGGAACGGTGTCTCCGGAAGAGGTAAATAACACGCAGTCGGTAT
GCTTCAACAACTGTTCAGGACGCGGGCGATGCGTGGATTACGCTTGCGAA
TGCGACGTGGGCTACGACGGCGACGACTGCAGCTTCATGCGCGACCACTC
ATACATATTTTCAAACCTTGATCCATCTGCAGGTAGCCTGGAAGGAACGG
TGTCTCCGGAAGAGGTAAATAACACGCAGTCGGTATGCTTCAACAACTGT
TCAGGACGCGGGCGATGCGTGGATTACGCTTGCGAATGCGACGTGGGCTA
CGACGGCGACGACTGCAGCTTC
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