mRNA_M-pyrifera_M_contig6789.16379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6789.16379.1
Unique NamemRNA_M-pyrifera_M_contig6789.16379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: D8LGN4_ECTSI (Uncharacterized protein n=5 Tax=Eukaryota TaxID=2759 RepID=D8LGN4_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 2.100e-93
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGRAG+QGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV
Sbjct:    1 MSKRGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: M4TPD7_9METZ (60S ribosomal protein L23 n=10 Tax=Eumetazoa TaxID=6072 RepID=M4TPD7_9METZ)

HSP 1 Score: 247 bits (631), Expect = 2.620e-79
Identity = 120/140 (85.71%), Postives = 131/140 (93.57%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR GS G+K+R++LGLPV AVMNC DN+GAKNLYIISV GIKGRLNR+PSAG+GD+V+ATV+KGKPELRKKVMPAVVVRQRK +RRKDGVFIYFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI 
Sbjct:    1 MSKRGRGGSSGSKFRISLGLPVGAVMNCADNTGAKNLYIISVKGIKGRLNRMPSAGIGDLVLATVKKGKPELRKKVMPAVVVRQRKPYRRKDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
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BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: F0WHX9_9STRA (60S ribosomal protein L23 putative n=3 Tax=Oomycota TaxID=4762 RepID=F0WHX9_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.710e-79
Identity = 117/141 (82.98%), Postives = 130/141 (92.20%), Query Frame = 3 
Query:   48 IMSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            + SKRGR G+ GNK RM LGLPVAAV NC DNSGA+NLYII+VCGIKGRLNRLP+AGVGDMV+ATV+KGKP+LRKKVMPAV++RQRK+WRR+DGVF+YFEDN GVIVN KGEMKGSAI GPV KECADLWPRIASNAGSIV
Sbjct:    1 MSSKRGRGGASGNKLRMALGLPVAAVANCADNSGARNLYIIAVCGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVIIRQRKSWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNAGSIV 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: A0A0N8BNL5_9CRUS (60S ribosomal protein L23 n=27 Tax=Eukaryota TaxID=2759 RepID=A0A0N8BNL5_9CRUS)

HSP 1 Score: 245 bits (626), Expect = 1.550e-78
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 3 
Query:   63 GRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            GR G  GNKYR+TLGLPV AVMNC DNSGAKNLYII+VCGIKGRLNRLP+AG+GDMV+ATV+KGKP+LRKKVMPA+V+RQR+AWRRKDGVFIYFEDN GVIVN KGEMKGSAI GPV KECAD+WPRIASNAGSIV
Sbjct:    6 GRGGLTGNKYRITLGLPVGAVMNCADNSGAKNLYIIAVCGIKGRLNRLPAAGLGDMVLATVKKGKPDLRKKVMPAIVIRQRRAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVGKECADIWPRIASNAGSIV 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: RL23_DANRE (60S ribosomal protein L23 n=15 Tax=Bilateria TaxID=33213 RepID=RL23_DANRE)

HSP 1 Score: 245 bits (625), Expect = 2.120e-78
Identity = 120/140 (85.71%), Postives = 130/140 (92.86%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR GS G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLPSAGVGDMVMATV+KGKPELRKKV PAVV+RQRK++RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI 
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: A0A1Y1Y5E8_9FUNG (Ribosomal protein L14b/L23e n=8 Tax=Zoopagomycota TaxID=1913638 RepID=A0A1Y1Y5E8_9FUNG)

HSP 1 Score: 245 bits (625), Expect = 2.120e-78
Identity = 116/140 (82.86%), Postives = 131/140 (93.57%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR G+ GNK+RM+LGLPV AV+NC DNSGAKNLYII+V GIKGRLNRLP+AGVGDMVMATV+KGKP+LRKKVMPAVV+RQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPV KECADLWPRIAS++G++V
Sbjct:    1 MSKRGRGGAAGNKFRMSLGLPVGAVINCADNSGAKNLYIIAVTGIKGRLNRLPAAGVGDMVMATVKKGKPDLRKKVMPAVVIRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASSSGTVV 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: A0A0P7TTA8_SCLFO (60S ribosomal protein L23 n=12 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A0P7TTA8_SCLFO)

HSP 1 Score: 244 bits (623), Expect = 4.270e-78
Identity = 120/140 (85.71%), Postives = 130/140 (92.86%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR GS G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLP+AGVGDMVMATV+KGKPELRKKV PAVVVRQRK++RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI 
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVVRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: A0A1D1YVF2_9ARAE (60S ribosomal protein L23 n=7 Tax=Eukaryota TaxID=2759 RepID=A0A1D1YVF2_9ARAE)

HSP 1 Score: 244 bits (623), Expect = 4.270e-78
Identity = 116/140 (82.86%), Postives = 129/140 (92.14%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR G+ GNK+RMTLGLPV A+MNC DNSGAKNLYIISV GI GRLNRLP+AGVGDMVMATV+KG+P+LRKKVMPAVV+RQRK WRRKDGVF+YFEDN GVIVN KGEMKGSAI GPV KECADLWPRIAS++G++V
Sbjct:    1 MSKRGRGGASGNKFRMTLGLPVGAIMNCADNSGAKNLYIISVKGIHGRLNRLPAAGVGDMVMATVKKGRPDLRKKVMPAVVIRQRKPWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASSSGTVV 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: RL23_HUMAN (60S ribosomal protein L23 n=390 Tax=cellular organisms TaxID=131567 RepID=RL23_HUMAN)

HSP 1 Score: 244 bits (622), Expect = 6.050e-78
Identity = 119/140 (85.00%), Postives = 130/140 (92.86%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR GS G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLP+AGVGDMVMATV+KGKPELRKKV PAVV+RQRK++RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI 
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Match: K4G3E1_CALMI (60S ribosomal protein L23 n=4 Tax=Callorhinchus milii TaxID=7868 RepID=K4G3E1_CALMI)

HSP 1 Score: 244 bits (622), Expect = 6.050e-78
Identity = 120/140 (85.71%), Postives = 130/140 (92.86%), Query Frame = 3 
Query:   51 MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 470
            MSKRGR GS G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLP+AGVGDMVMATV+KGKPELRKKV PAVV+RQRKA+RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI 
Sbjct:    1 MSKRGRGGSCGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKAYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6789.16379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGN4_ECTSI2.100e-9399.29Uncharacterized protein n=5 Tax=Eukaryota TaxID=27... [more]
M4TPD7_9METZ2.620e-7985.7160S ribosomal protein L23 n=10 Tax=Eumetazoa TaxID... [more]
F0WHX9_9STRA2.710e-7982.9860S ribosomal protein L23 putative n=3 Tax=Oomycot... [more]
A0A0N8BNL5_9CRUS1.550e-7885.2960S ribosomal protein L23 n=27 Tax=Eukaryota TaxID... [more]
RL23_DANRE2.120e-7885.7160S ribosomal protein L23 n=15 Tax=Bilateria TaxID... [more]
A0A1Y1Y5E8_9FUNG2.120e-7882.86Ribosomal protein L14b/L23e n=8 Tax=Zoopagomycota ... [more]
A0A0P7TTA8_SCLFO4.270e-7885.7160S ribosomal protein L23 n=12 Tax=Osteoglossoceph... [more]
A0A1D1YVF2_9ARAE4.270e-7882.8660S ribosomal protein L23 n=7 Tax=Eukaryota TaxID=... [more]
RL23_HUMAN6.050e-7885.0060S ribosomal protein L23 n=390 Tax=cellular organ... [more]
K4G3E1_CALMI6.050e-7885.7160S ribosomal protein L23 n=4 Tax=Callorhinchus mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6789contigM-pyrifera_M_contig6789:4202..9563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.3
Seed ortholog evalue1.2e-73
Seed eggNOG ortholog2880.D8LGN4
Preferred nameRPL23
KEGG koko:K02894
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000184,GO:0000956,GO:0001221,GO:0001223,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006606,GO:0006610,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010948,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017022,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022411,GO:0022625,GO:0022626,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032984,GO:0032986,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042886,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045786,GO:0045787,GO:0045861,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070180,GO:0070727,GO:0070887,GO:0070972,GO:0071156,GO:0071157,GO:0071158,GO:0071236,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0072716,GO:0072717,GO:0080090,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901798,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.large ribosomal subunit rRNA binding
EggNOG OGsCOG0093@1,KOG0901@2759
Ec32 ortholog descriptionRibosomal protein L14b/L23e
Ec32 orthologEc-10_002900.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size1027
Cds size423
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.8332882-UTR-M-pyrifera_M_contig6789:4201..47551622816569.8332882-UTR-M-pyrifera_M_contig6789:4201..4755Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6789 4202..4755 -
1692278052.5653882-UTR-M-pyrifera_M_contig6789:4201..47551692278052.5653882-UTR-M-pyrifera_M_contig6789:4201..4755Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6789 4202..4755 -
1622816569.920986-UTR-M-pyrifera_M_contig6789:9513..95631622816569.920986-UTR-M-pyrifera_M_contig6789:9513..9563Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6789 9514..9563 -
1692278052.6249125-UTR-M-pyrifera_M_contig6789:9513..95631692278052.6249125-UTR-M-pyrifera_M_contig6789:9513..9563Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6789 9514..9563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.8483372-CDS-M-pyrifera_M_contig6789:4755..48381622816569.8483372-CDS-M-pyrifera_M_contig6789:4755..4838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 4756..4838 -
1692278052.578926-CDS-M-pyrifera_M_contig6789:4755..48381692278052.578926-CDS-M-pyrifera_M_contig6789:4755..4838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 4756..4838 -
1622816569.8631985-CDS-M-pyrifera_M_contig6789:5483..55971622816569.8631985-CDS-M-pyrifera_M_contig6789:5483..5597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 5484..5597 -
1692278052.5900614-CDS-M-pyrifera_M_contig6789:5483..55971692278052.5900614-CDS-M-pyrifera_M_contig6789:5483..5597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 5484..5597 -
1622816569.877779-CDS-M-pyrifera_M_contig6789:7471..75311622816569.877779-CDS-M-pyrifera_M_contig6789:7471..7531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 7472..7531 -
1692278052.6007612-CDS-M-pyrifera_M_contig6789:7471..75311692278052.6007612-CDS-M-pyrifera_M_contig6789:7471..7531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 7472..7531 -
1622816569.8921974-CDS-M-pyrifera_M_contig6789:8029..81821622816569.8921974-CDS-M-pyrifera_M_contig6789:8029..8182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 8030..8182 -
1692278052.6088586-CDS-M-pyrifera_M_contig6789:8029..81821692278052.6088586-CDS-M-pyrifera_M_contig6789:8029..8182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 8030..8182 -
1622816569.9061272-CDS-M-pyrifera_M_contig6789:9500..95131622816569.9061272-CDS-M-pyrifera_M_contig6789:9500..9513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 9501..9513 -
1692278052.6169677-CDS-M-pyrifera_M_contig6789:9500..95131692278052.6169677-CDS-M-pyrifera_M_contig6789:9500..9513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6789 9501..9513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6789.16379.1prot_M-pyrifera_M_contig6789.16379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6789 4756..9513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6789.16379.1

>prot_M-pyrifera_M_contig6789.16379.1 ID=prot_M-pyrifera_M_contig6789.16379.1|Name=mRNA_M-pyrifera_M_contig6789.16379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MSKRGRAGSQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLN
RLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFED
NGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV*
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mRNA from alignment at M-pyrifera_M_contig6789:4202..9563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6789.16379.1 ID=mRNA_M-pyrifera_M_contig6789.16379.1|Name=mRNA_M-pyrifera_M_contig6789.16379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5362bp|location=Sequence derived from alignment at M-pyrifera_M_contig6789:4202..9563- (Macrocystis pyrifera P11B4 male)
CACAGCCCCTTCGCTGTTTGGAAGCACCCCAGGCAAACCCTTTTCCCATC
ATGTCCAAGCGTGGTGAGCCAGGATGGATTTTTCTCTAGCAGGCATAGTC
GCCGTGTGATTTACTCCGATAGTGCGGTTGTTTTTTGGACGAATTTGCGA
GCTACGTCGTAGAGAAAATTTGCTGTCAATGGTGGTGTGCGGATGCCAAG
GGTCGATACCAGCGGCGTTGATTGTGAGGCGCGCTGTGGTTGCCTCGCTG
TGTCGATTGTTCTGGCTGTGAGGGTGCCTGATGCATGTGTGCTAGAGTAG
AAGCGTGCAGTTCGAATTGCCCTTGTAGGTTGGGCGTCGCTGTTGTTGAA
ATGGAAGTGTGTGTGCTGCGTTGACCTATATAACAACGTAACGCTAGAGA
TGGGACCGCTGTCTCCCACGAGTTTGTATGGACGGACGTCTTTGGCTATT
TTTGAGCTTTGCAGCTTCTACTGCTACAGCCACTAGCAACAGCCACTAGC
AATCCGTCCCTGGATCGTGGCCGCCTCTCGACTCTGTCACGCCCAAAGTA
GTTCTTGTTGCAGACGCCTATCAAGGGAACGGTTTCCCATGCTAATCAGC
AGCACAAGCGCTGCAGCATCGCACCACCCCTATATATACCTCAATAGCCC
AGGTTTGTACCTTGCGCGAGGGATGTCTTGCACGGAGTCGTACTGCTACC
GTACTTGATACGTGGACGGACGTGCAATGGTCCAAAACAGCGAGCACGCG
TCACGACGTGAACTCAGTCAACGTGTGTTTCGCCTCAGTGGGCTCGAAGC
GAACCACCTAACCTCAAGCAGTGGATATGCGCGTAGAATCGCTTGTATTC
CGAAGCCGTTCGAGCCTTTTTGCCCTTTGAAATCACTCGTTTTCGATCAA
GAAAACGCCATCAAAATCGAGCTTAACCGAGAGCCTTTTGAGGATCACAT
GTACACTAATACCAAGACAAAAATGTCTACGTACGTACACACCATTATTT
ATCCCACCGTACTTGCTTTATACTCGATGGTGCACCGGAACCGAACACGC
CGCGAAAATCAGTTCTCGTCCTCAGCCGGCTCTTCTCATGAATATTCCCG
AAAAACCTCGGAGACAAGCCTGCCAACCAGCCGAAACCACTAACGACGAT
TACACCGCATCGCATTATCGCATCCCATTTTTTTACCATGCACGTGGGCT
AATGCTGTCCCTGGTATGATACATGGTACTGCGTATATTGGATGTATACA
ACGGCGGCGCTTCCTCGCCCGCATCTCTCTAGGAACCCCCTCCCCACCCC
CCCCTCCATTTCCCCCGCCTTACCTCCGCCTCCCGTACGTGTATCAATAT
GCGTACTTTGCCCCTGAATCCGTTGTCATAGGGCGCGCCGGCTCTCAGGG
CAACAAGTACCGCATGACCCTCGGTCTGCCGGTGGCCGCGGTGATGAACT
GCTGCGACAACAGCGGAGCCAAGAACTTGTACATCATCTCGGTGTGCGGG
ATCAAGGGTCGCCTGAACCGTCTGCCGTCGGCCGGTGAGCGGAAAGGGGG
AGGAGGGGGCGGGGTGGGATGGGGAAGAGGGTTCGGCCACTACTCGAGCT
ACCTATACCCCTTACTTTGCTTGTCTGTTTGTTACTGAACTTGGTCCATC
CACCTGGCCGGGCGTTGCAACGATGCTTGCCCCAGGCTCCTGCTGAGTTC
ACGGGTGTGAGTATGCAAGTGTGAGTGGCTCGGTTTCCTCGCGATGCCAC
CATACACCCGCATCAAAATTCCACCCAAACCTGCATATTCCAGCGAGGAA
TTGCGCAGACAAGATTGCCAGTAGCCGAGTACGTACGTGCTAGTAGTACT
CGTACGAGTATTTTGAATTTCATCATATTGAGGCGTTTTTGTTGTGACAC
GACTGACCCACTGGGATGCGTCATGTCAAGGCGTTTTTTCTGATACGACT
GACCAACCGCGGGTTTTGCTCTCGTCCGCAACGTTGGGGTTTTTTGTCGT
ACGTTGGCGTTTTTTTTCTCCTCGGCATACAGGTGTCGGTGACATGGTGA
TGGCCACGGTGAGGAAGGGAAAGCCGGAGCTCCGCAAGAAAGGTGAGCCT
CCGCTCCTATAACAGGAACACGCCTCCACAGTCGATAGGACAGAGCCCCC
CCCAACTCTGGGTTTGCAGTCGAGGGGCCTTGGCTTCTGATGTACAGGTA
ACTGGTCTCCGCTATCCTCCGCTAGGTTTGTGTGACGGGCAGACCGAAGG
CCTGCAGAAACTCCCCCCCCCCCGGTTTTCGTTTTTGCGTAGCCTTGTCC
TTTGATGTACGAAGAAGGGGATTGGTTTCACGAAGCTTCCTATTGGTAAA
AAAAAAACTCACACACTAGCAGTGAGATTGAAGATCTCGTCGAAACATTT
CTGTGGTATATGCCAGGTACCTGATGAGGTACAGGAAGGTACCAAGTGTA
CGTGTATGTACCTATATAGCATGCCGAAGGTTGGAAGATGTGCCTGAGAT
TAAACGCGCACTTGAACGGTAGGCGGTATATTTGCGTACCAGGTAGTGCT
GTGACTGTTGTGACGCGCAAGGTATTACGGGGGGTCCATAGTTAATAGGA
CCTATGGTATACATAAAAACCTCTATATTTACCTATTTTTACTAGCAAAA
TTTGGTCCCGTTAACTATGGTCCCCCGTAATAGCAGATGATGGTGGATAA
GGTTCCTGTATCTTGTTTTTGCTCGTTGCGCGGTCTTGGGTCTGTCACGC
GCTGTGCTTTTTTGGTTTGTATTATATCGGGGCAAAAACAAGCACGATGC
GAAGCGTAGTAGACGTGTGTGTGTGTCTTCGTCATTTTGGAAACTGGTTT
GCCTTTCTTCTCTTCTTGCCTACGAGTTACGTTCAATAGCGGCTCTATGG
TCAAACGACTACGGCCGTGCATGATATCGAGTACACCTCCCTCTATGTTT
CCTGAGGTTTTGGGAGTGGCGCTGACAGAGGAAGACTGACGCTTTGAATG
TTCTGCTCGAAGGGTTTTTGTTTGATCCGTTCTGTGTCTGGTCGATGTTG
CGACATCCTCGCCTTGGGCGGTGGCGCTGATTGACGGGGTAAATCCCTAC
GCTGCCACGCCTTCTCAAGTCCCGAAAAACTCTTTAGATCGATAGATAAC
CCCCGCACCGCCCCCAACGAAGACATGAAACCTTGAGGAACACTCGCGCT
ATCCAATACAGCCAGGAAACTAACCTCTCGCCTGCTCTATTACGGGGGAC
CATAGTAAACAGGACAAAATATTGTGAGTAAAAATAGGGAAATATATAAG
TTTTTTTGAGCGTACCGCAGGTACTATTTACTATGGTCCCCCGTGTAGAC
ACCCCGGGGGTAGTTTGGTTTTGTGTGTCGCGAGAGAGAGGCCCTAACAA
CGCGTCGTCTCATGTTGTAAAGTGGAAACGAATACCTGTACGGCCAGTAT
CCGAACAGCGATCGCTAACTACGTCCAGAGACATTCCGAACGGTGGCCTA
TCATGACTGGAAACATGGCAGCCAACGACCGAATAGCGACCGCTACAGGC
ATTCCGAGCACTCTGCCGTTTGGAATGTCCTCTATAGTCTGTTGTCGTGA
CTGTGTGGTTGCTGGCTGTCTTTCAGCCCGTCTACTGTTCGGAATGTCTG
TACGTGGTCTGTATCAGGTAGTGAGTAAGTCGTTGTTCGCTTACTGGCTG
TGCTTGTTTCCATTCATAGTAGGACATGTAGCGCTGTTTTGTTCTGTGTA
TTAGGAGGAAGGGCCTCTGACAGCGTCGCCGTATTATCAGTGAAAACCGC
CACCTGGTTAACTTTCGGTCGGCGGCGGCTGGTGTCAGCCTCCCGTGATT
ATTGTATCGGCGACGCAAAGCGCAACCTGCGATAGTGGCATGCAGATACG
AATTCTGACTATTACCCCTCCCCCCACCACCCTCACACCGCCGTCTTATC
CTGCGTCACGGTGCAGTGATGCCCGCCGTGGTGGTGAGGCAGCGCAAGGC
CTGGAGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGACAACGGCGGAG
TGATCGTCAACAACAAGGGCGAGATGAAGGGTGAGCTTCTTGGCCCTTGG
TGTCGTCTGTCCTCCGGTTCTTTTTCTGCCCTGTAGCTTTGTTTTCGTCT
CACTTCGTCCGTCGTGTAGAGACAGAGCGCACACGAAGAGTCGATGTTTT
TTATGCTCCCGTGACGTGTTGCTTCCGGAAGCAAAACCTCCGTCTCTTCT
GCGGTGGCGAAGATTTCCCCCGTTTGCCGTGTCCAACGCCCCTTGGTATA
TATTATACATGGTACAAGGATGGTACCCTTCTGGTACATTTTGGGGTGCT
GATCAAGTCTCAAAACCAGGGGCAATTTTTCAGGGGTAGTACTAAAGGTA
TCTGCTGCCGCGAGGAAGACGCTACGACAATTAAGAGGCATCGACTGTAG
GGTACCATTATTTAGTACTCCCTGCCCGCCGGCTTTCCCTCTGTATATAT
ATATATTAAACAAGGCGCCGAACGTTGTAGTCGGCCACAACCCCCCACCA
TCCCTGCTTACACCACGCGTTATAATCCCCACCCTCCGCTCTTTTGGACA
CATGGTCGCGTTGCGCTTATTAGCTGGAATTCCTGGCCTGTGTGACTTGG
GTGGGTGGGTCTAATAAACAAACCGCCGGCCCCCTTGTGCGCGTTTCGTT
CCCTTTTTTTTCGTCTACCCTTAAGGTTCCGCGATCAACGGCCCCGTGGC
CAAGGAGTGCGCCGACCTGTGGCCCCGTATCGCCAGCAACGCCGGTTCCA
TCGTCTAAACCCGACCACGATACCACTTTTTTCGAGGAGGCATTTCGGTT
CCGCCTCGTCAGCGTGTAGAGCTCGTATAGCTCGCGTCGTTTCCGGAAGT
CAATTTGGCTGTTGCGAGGGGGGGGAGGAGGACACGGGCCGGGTCTGATC
TAGTCCGAGAGACCCGGTCACGGTTGCTCGAGTGTTTTGATGCTTTTGGT
TGCTTTCACGGCACAAGGTTAAGTAAGACCCGTCGCTGGCTCGACGCGGT
GGAATTTGACGTGTAGTCGTCACGACTAAAAGGGAAGGGGGCGCGCGCTG
CTGGGTCATGAATTTTGCACCGAATTCAGAAACATGTTCTATCTCCTTCC
TTCTCTGGAGTTTTCTCTTCCTCTTTCCCCGTCCCGTGTTGTGTTTTTAT
GGATTTTCCTTGACACTTATGCATGCATTGCATGCGCACGGCGCATACAC
ACCTCAGCGCTATTGTTGTTCATACTCACACAAGGACATAATGACCACAC
AGATGCACAATGATGCACATCGATGAACACCGCATGCATGCGCACGGCGC
CGGACACACACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6789:4202..9563-

>mRNA_M-pyrifera_M_contig6789.16379.1 ID=mRNA_M-pyrifera_M_contig6789.16379.1|Name=mRNA_M-pyrifera_M_contig6789.16379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig6789:4202..9563- (Macrocystis pyrifera P11B4 male)
ATGTCCAAGCGTGATGTCCAAGCGTGGGCGCGCCGGCTCTCAGGGCAACA
AGTACCGCATGACCCTCGGTCTGCCGGTGGCCGCGGTGATGAACTGCTGC
GACAACAGCGGAGCCAAGAACTTGTACATCATCTCGGTGTGCGGGATCAA
GGGTCGCCTGAACCGTCTGCCGTCGGCCGGGCGCGCCGGCTCTCAGGGCA
ACAAGTACCGCATGACCCTCGGTCTGCCGGTGGCCGCGGTGATGAACTGC
TGCGACAACAGCGGAGCCAAGAACTTGTACATCATCTCGGTGTGCGGGAT
CAAGGGTCGCCTGAACCGTCTGCCGTCGGCCGGTGTCGGTGACATGGTGA
TGGCCACGGTGAGGAAGGGAAAGCCGGAGCTCCGCAAGAAAGGTGTCGGT
GACATGGTGATGGCCACGGTGAGGAAGGGAAAGCCGGAGCTCCGCAAGAA
AGTGATGCCCGCCGTGGTGGTGAGGCAGCGCAAGGCCTGGAGGCGGAAGG
ACGGTGTGTTCATCTACTTCGAGGACAACGGCGGAGTGATCGTCAACAAC
AAGGGCGAGATGAAGGTGATGCCCGCCGTGGTGGTGAGGCAGCGCAAGGC
CTGGAGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGACAACGGCGGAG
TGATCGTCAACAACAAGGGCGAGATGAAGGGTTCCGCGATCAACGGCCCC
GTGGCCAAGGAGTGCGCCGACCTGTGGCCCCGTATCGCCAGCAACGCCGG
TTCCATCGTCTAAGTTCCGCGATCAACGGCCCCGTGGCCAAGGAGTGCGC
CGACCTGTGGCCCCGTATCGCCAGCAACGCCGGTTCCATCGTCTAA
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