mRNA_M-pyrifera_M_contig67879.16374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67879.16374.1
Unique NamemRNA_M-pyrifera_M_contig67879.16374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: U5TX86_SETIT (Photosystem II reaction center protein I n=61 Tax=Mesangiospermae TaxID=1437183 RepID=U5TX86_SETIT)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    9 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A3G4R1V2_9ROSI (Photosystem II reaction center protein I n=2 Tax=Zygophylloideae TaxID=293141 RepID=A0A3G4R1V2_9ROSI)

HSP 1 Score: 87.0 bits (214), Expect = 8.330e-22
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    4 NLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            NLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   10 NLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: UPI001D01CD55 (photosystem II protein I n=1 Tax=Dracocephalum taliense TaxID=2835938 RepID=UPI001D01CD55)

HSP 1 Score: 85.9 bits (211), Expect = 2.450e-21
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
             NLGD+VMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   10 NNLGDFVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 52
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A1W6F9N9_HEVBR (Photosystem II reaction center protein I n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A1W6F9N9_HEVBR)

HSP 1 Score: 85.5 bits (210), Expect = 3.400e-21
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            K+LGD++MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    9 KDLGDFIMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: H6T0Q3_9POAL (Photosystem II protein I (Fragment) n=1 Tax=Cyperus alternifolius TaxID=4611 RepID=H6T0Q3_9POAL)

HSP 1 Score: 85.5 bits (210), Expect = 3.480e-21
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            K+LGD++MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   10 KDLGDFIMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 52
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A6B9VXD4_ALLTU (Photosystem II reaction center protein I n=11 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6B9VXD4_ALLTU)

HSP 1 Score: 85.9 bits (211), Expect = 7.570e-21
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            KNLGD VMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   53 KNLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 95
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A142K1S0_9POAL (Photosystem II reaction center protein I n=86 Tax=Andropogoneae TaxID=147429 RepID=A0A142K1S0_9POAL)

HSP 1 Score: 84.3 bits (207), Expect = 9.770e-21
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            K  GDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    9 KIFGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A221HPQ5_9ERIC (Photosystem II reaction center protein I n=54 Tax=asterids TaxID=71274 RepID=A0A221HPQ5_9ERIC)

HSP 1 Score: 84.0 bits (206), Expect = 1.420e-20
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            K  GD+VMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   10 KKFGDFVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 52
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A1B0QVB6_PERLT (Photosystem II reaction center protein I n=154 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1B0QVB6_PERLT)

HSP 1 Score: 84.0 bits (206), Expect = 1.490e-20
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            K+LGD VMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   12 KDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 54
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BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Match: A0A6G6DA41_CRYJP (Photosystem II reaction center protein I n=7 Tax=Pentapetalae TaxID=1437201 RepID=A0A6G6DA41_CRYJP)

HSP 1 Score: 84.0 bits (206), Expect = 1.530e-20
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 KNLGDYVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 129
            K+LGD VMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:   13 KDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 55
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67879.16374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U5TX86_SETIT1.010e-22100.00Photosystem II reaction center protein I n=61 Tax=... [more]
A0A3G4R1V2_9ROSI8.330e-22100.00Photosystem II reaction center protein I n=2 Tax=Z... [more]
UPI001D01CD552.450e-2195.35photosystem II protein I n=1 Tax=Dracocephalum tal... [more]
A0A1W6F9N9_HEVBR3.400e-2193.02Photosystem II reaction center protein I n=1 Tax=H... [more]
H6T0Q3_9POAL3.480e-2193.02Photosystem II protein I (Fragment) n=1 Tax=Cyperu... [more]
A0A6B9VXD4_ALLTU7.570e-2197.67Photosystem II reaction center protein I n=11 Tax=... [more]
A0A142K1S0_9POAL9.770e-2195.35Photosystem II reaction center protein I n=86 Tax=... [more]
A0A221HPQ5_9ERIC1.420e-2093.02Photosystem II reaction center protein I n=54 Tax=... [more]
A0A1B0QVB6_PERLT1.490e-2095.35Photosystem II reaction center protein I n=154 Tax... [more]
A0A6G6DA41_CRYJP1.530e-2095.35Photosystem II reaction center protein I n=7 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67879contigM-pyrifera_M_contig67879:724..855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog218851.Aquca_033_00045.1
Preferred namepsbI
KEGG koko:K02710
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.One of the components of the core complex of photosystem II (PSII), required for its stability and or assembly. PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation
EggNOG OGs2D0NY@1,2SEUZ@2759,37XVW@33090,3GMN1@35493
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size132
Cds size111
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.5088317-UTR-M-pyrifera_M_contig67879:723..7441622816569.5088317-UTR-M-pyrifera_M_contig67879:723..744Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67879 724..744 +
1692278052.3602333-UTR-M-pyrifera_M_contig67879:723..7441692278052.3602333-UTR-M-pyrifera_M_contig67879:723..744Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67879 724..744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.5238054-CDS-M-pyrifera_M_contig67879:744..8551622816569.5238054-CDS-M-pyrifera_M_contig67879:744..855Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67879 745..855 +
1692278052.373837-CDS-M-pyrifera_M_contig67879:744..8551692278052.373837-CDS-M-pyrifera_M_contig67879:744..855Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67879 745..855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67879.16374.1prot_M-pyrifera_M_contig67879.16374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67879 745..855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67879.16374.1

>prot_M-pyrifera_M_contig67879.16374.1 ID=prot_M-pyrifera_M_contig67879.16374.1|Name=mRNA_M-pyrifera_M_contig67879.16374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE*
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mRNA from alignment at M-pyrifera_M_contig67879:724..855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67879.16374.1 ID=mRNA_M-pyrifera_M_contig67879.16374.1|Name=mRNA_M-pyrifera_M_contig67879.16374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig67879:724..855+ (Macrocystis pyrifera P11B4 male)
AAAAATCTTGGAGATTATGTAATGCTTACTCTAAAACTATTTGTTTACAC
GGTAGTGATATTCTTTGTTTCTCTCTTTATCTTCGGATTCCTGTCTAATG
ATCCAGGACGTAATCCTGGACGTGAAGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67879:724..855+

>mRNA_M-pyrifera_M_contig67879.16374.1 ID=mRNA_M-pyrifera_M_contig67879.16374.1|Name=mRNA_M-pyrifera_M_contig67879.16374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig67879:724..855+ (Macrocystis pyrifera P11B4 male)
ATGCTTACTCTAAAACTATTTGTTTACACGGTAGTGATATTCTTTGTTTC
TCTCTTTATCTTCGGATTCCTGTCTAATGATCCAGGACGTAATCCTGGAC
GTGAAGAATAAATGCTTACTCTAAAACTATTTGTTTACACGGTAGTGATA
TTCTTTGTTTCTCTCTTTATCTTCGGATTCCTGTCTAATGATCCAGGACG
TAATCCTGGACGTGAAGAATAA
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