mRNA_M-pyrifera_M_contig6786.16370.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: D8LRD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD4_ECTSI) HSP 1 Score: 112 bits (280), Expect = 7.680e-31 Identity = 56/68 (82.35%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 67 MAKRXXXXXXXXXXXGAAAKGGPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
MAKR GAAAKGG NQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG
Sbjct: 1 MAKRARPQRPAAGARGAAAKGGNNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 68
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A835YZ77_9STRA (Transporter Sec61 subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ77_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.850e-20 Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 31 RAAKPAGAAGASMAKRXXXXXXXXXXXGAAAKGG-PNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
R AKPAGAAG + +R AA GG P Q GI++FY++D+PG ++GP ++L+FSL+FIGCVVLLHIWGK +G
Sbjct: 10 RQAKPAGAAGTAAQRRGSRGKP------AAGGGGRPQQGGILQFYSEDSPGFQVGPNIILIFSLSFIGCVVLLHIWGKLRG 84
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A7S3XTM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTM9_HETAK) HSP 1 Score: 80.9 bits (198), Expect = 6.920e-18 Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 115 AAAKGGPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFK 267
AA G QQGI+RFYTD+APGL+IGPT VL FS++FIG VVLLHIWGKF+
Sbjct: 57 AAGGRGGGQQGILRFYTDEAPGLKIGPTAVLFFSVSFIGVVVLLHIWGKFR 107
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A7S3V0E6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V0E6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 9.400e-17 Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query: 118 AAKGGPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFK 267
A++ GP+ + +RFYTDDAPGL++GPT VLVFS+ FIG VV+LHIWGKF+
Sbjct: 51 ASRQGPSTRDTLRFYTDDAPGLKVGPTTVLVFSVMFIGFVVMLHIWGKFR 100
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A024GLR5_9STRA (Protein transport protein Sec61 subunit beta n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GLR5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.450e-16 Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 22 LSNRAAKP----AGAAGASMAKRXXXXXXXXXXXGAAAKGGPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
LSN+ P AG+A + + KR XXXXX GG + GI+RFYTDD+PGL+IGPT VLV L F+G VVLLH+WGKF+G
Sbjct: 6 LSNKKPAPSAAEAGSAASGLRKRPQASAKXXXXXXXRGMGG-SSAGILRFYTDDSPGLKIGPTTVLVLCLVFVGLVVLLHVWGKFRG 91
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A024TNF2_9STRA (Protein transport protein Sec61 subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TNF2_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.710e-16 Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1
Query: 130 GPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
G + G++RFYTDDAPGLR+GPT VLV +L F+G VVLLH+WGKF+G
Sbjct: 38 GGSSAGVLRFYTDDAPGLRVGPTTVLVGALLFVGFVVLLHVWGKFRG 84
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A485LI25_9STRA (Protein transport protein Sec61 subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LI25_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.630e-16 Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 130 GPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
G + G++RFYTDDAPGL++GPT VLV L F+G VVLLH+WGKF+G
Sbjct: 40 GGSSAGVLRFYTDDAPGLKVGPTTVLVMCLMFVGFVVLLHVWGKFRG 86
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: I2CQ18_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ18_NANGC) HSP 1 Score: 76.3 bits (186), Expect = 4.330e-16 Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 112 GAAAKGGPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKF 264
G +GG + GI+RFY+D+APGLR+GP VVLV SLAFIG VVLLHIW KF
Sbjct: 53 GGGNRGGASSAGILRFYSDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 103
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A8K1CUR3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUR3_PYTOL) HSP 1 Score: 75.5 bits (184), Expect = 5.870e-16 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 130 GPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
G + GI+RFYTDD+PGL+IGPT VLV L F+G VVLLH+WGKF+G
Sbjct: 45 GGSSAGILRFYTDDSPGLKIGPTTVLVLCLMFVGFVVLLHVWGKFRG 91
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Match: A0A5D6XV10_9STRA (Protein transport protein Sec61 subunit beta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV10_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 7.900e-16 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 130 GPNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKFKG 270
G + GI+RFYTDD+PGL+IGPT VLV L F+G VVLLH+WGKF+G
Sbjct: 43 GGSTAGILRFYTDDSPGLKIGPTTVLVMCLLFVGFVVLLHVWGKFRG 89 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6786.16370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6786.16370.1 >prot_M-pyrifera_M_contig6786.16370.1 ID=prot_M-pyrifera_M_contig6786.16370.1|Name=mRNA_M-pyrifera_M_contig6786.16370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp PKPAGEGLSNRAAKPAGAAGASMAKRGRPQRPAAGARGAAAKGGPNQQGIback to top mRNA from alignment at M-pyrifera_M_contig6786:9634..13517+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6786.16370.1 ID=mRNA_M-pyrifera_M_contig6786.16370.1|Name=mRNA_M-pyrifera_M_contig6786.16370.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3884bp|location=Sequence derived from alignment at M-pyrifera_M_contig6786:9634..13517+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6786:9634..13517+ >mRNA_M-pyrifera_M_contig6786.16370.1 ID=mRNA_M-pyrifera_M_contig6786.16370.1|Name=mRNA_M-pyrifera_M_contig6786.16370.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig6786:9634..13517+ (Macrocystis pyrifera P11B4 male)back to top |