mRNA_M-pyrifera_M_contig678.16358.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 278 bits (712), Expect = 6.970e-87 Identity = 139/202 (68.81%), Postives = 165/202 (81.68%), Query Frame = 1
Query: 7 SPRAELRDHTKPRVLLQVAFSYFLFVLSLNVFAAGYNYLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPLFTQIFSASSSAGFEEAPFFVAAIISGVGLTVAWRPLRKLDKARN 612
+P + L+ + R LL++A SYFLFVLSLNVFA GYNY+D+RF W+P EISYFFAT+N LMA+AGGW +R +VPKRL+EE GALFGI +Q + V GLC RGWMLYPAL FG++QNIT+PCLQAIMATFV + QGSLQ GAVMSLRV+GEGVA P+FTQ+FSA +S GFEEAPFF+A IS V L VAW PLRKLDK +N
Sbjct: 347 NPLSVLKVFLESRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQVFSVMVSGLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQ-GAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEAPFFLATAISLVSLAVAWWPLRKLDKTKN 547
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 170 bits (430), Expect = 2.210e-46 Identity = 93/204 (45.59%), Postives = 125/204 (61.27%), Query Frame = 1
Query: 7 SPRAELRDHTKPRVLLQVAFSYFLFVLSLNVFAAGYNYLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPLFTQIFSASSSAGFEEA--------PFFVAAIISGVGLTVAWRPLRK 594
+P + L+ + +L+Q+A F LSLNVF+ YNY DFR+HWSPL+IS FF+TF L+A+ G +R +VPKRLS G L G+ +Q + T++GL ++GWM Y L +Q IT+PC+Q +MA V DRQGSLQ GAV LR + +G+AG L+ QIFS S E A P F A+ LT+AW LRK
Sbjct: 272 NPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQ-GAVQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRK 474
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: A0A399EXR1_9DEIN (Tetracycline resistance protein, class C n=4 Tax=Calidithermus TaxID=2747271 RepID=A0A399EXR1_9DEIN) HSP 1 Score: 88.2 bits (217), Expect = 5.660e-17 Identity = 63/203 (31.03%), Postives = 101/203 (49.75%), Query Frame = 1
Query: 7 SPRAELRDHTKPRVLLQVAFSYFLFVLSLNVFAAGY-NYLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPLFT-----QIFSASSSAGFEEAPFFVAAIISGVGLTVAWRPLRKL 597
+P A L + +LL ++ S L L+ + + Y +RF WS L+ S + A+A GL ++ RL E L G +FT+YGL +GWM+Y + GSI N+++P QA+++ V+ QG++Q GA+ +L + G+ GPLF Q+ A PFFV A++ G+G W R++
Sbjct: 193 NPFAALSILKRTPLLLGLSGSVILINLAFQILQTVWVQYTTYRFEWSILQTSLSLVLVG-VTAVAVQGGLVRLIVGRLGERRSVLLGQGAGIVSFTLYGLATQGWMMYATILLGSIGNVSQPASQALISRSVSAREQGAVQ-GALSALVSL-TGMVGPLFGGFLLGQVARAGVPTWMVGMPFFVGALLYGLGFVNTWLTFRRV 392
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: A0A835YXD6_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.710e-14 Identity = 52/178 (29.21%), Postives = 82/178 (46.07%), Query Frame = 1
Query: 70 YFLFVLSLNVFAAGYNYLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPLFTQIFSASSSAGFEEA---------PFFVAAIISGVGLTVA 576
YF ++ F + Y LD+RF W P++I F A F + +R VVP+ +++ G+ IQ ++G+ +GW LY ++ + A R GSLQ GA+ SLR++ +G+AGPL+ +F+ S +A F AA+ S GL A
Sbjct: 477 YFCACTAIGSFNSWYTLLDYRFGWGPVQIGAFCAAFGLGITAVQSLVIRAVVPRLMTQARAVPVGMAIQALGMGLFGIANKGWELYAITPISALSS----------AAATDASRLGSLQ-GALFSLRILSQGLAGPLYGALFNLGISDALRDALGGTRLPGLAFLAAALASLAGLAFA 643
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: UPI00164F7FE6 (MFS transporter n=1 Tax=Pontibacter beigongshangensis TaxID=2574733 RepID=UPI00164F7FE6) HSP 1 Score: 76.3 bits (186), Expect = 9.500e-13 Identity = 57/179 (31.84%), Postives = 86/179 (48.04%), Query Frame = 1
Query: 67 SYFLFVLSLNVFAAGYNYLD-FRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPLFTQIFSASSSAG----FEEAPFFVAAIISGVGLTVAWRPL 588
S F ++++VF + Y +F W I Y F L+A+ G L +V RL + A GI + + + GL + WML+ L ++ I++P +Q+I++ V QG LQ G V SL V PL + FS +S F EAPFF+AA ++G L + R L
Sbjct: 223 SLFCTYIAVHVFHNVWAYFTALKFEWPEASIGYSFGLLGLLIALVQGV-LTGLVAPRLGAKRTACVGISLYSLGYLLLGLASESWMLFAFLLPYAMGGISEPAIQSILSGEVPETEQGELQ-GGVASLASATAVVGAPLMSYFFSFFTSDNAPLYFPEAPFFLAAALTGTSLLIVLRVL 399
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: UPI00166C8BA5 (TCR/Tet family MFS transporter n=1 Tax=Undibacterium terreum TaxID=1224302 RepID=UPI00166C8BA5) HSP 1 Score: 69.3 bits (168), Expect = 2.390e-10 Identity = 46/159 (28.93%), Postives = 75/159 (47.17%), Query Frame = 1
Query: 124 DFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQG--AVMSLRVIGEGVAGP-LFTQIFSASSSAGFEEAPFFVAAIISGVGLTVAWRPLR 591
+ RF WSPL+ + G L ++ KR+ + L G+ +YGL +GWM+Y + + + P LQAI + V QG+ A+ S+ + +AG L Q+ + + APFF+AA++ G+ LT+A+R LR
Sbjct: 247 ELRFGWSPLQNGLSLFVVGVSSVLMQGVFLGRLI-KRIGDARAVLIGLASSTTALLLYGLATQGWMMYALILCNVLGFASGPALQAIFSKAVEPQSQGAAMGSLTALASIMSVAATLAGTFLLGQVSHQAKGSVLLGAPFFMAAVMQGLALTIAYRHLR 404
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: A0A4R1AK31_9FLAO (MFS transporter n=2 Tax=Tenacibaculum sp. M341 TaxID=2530339 RepID=A0A4R1AK31_9FLAO) HSP 1 Score: 68.9 bits (167), Expect = 3.370e-10 Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = 1
Query: 52 LQVAFSYFLFVLSLNVFAA--GYNYLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPLFTQIFS---ASSSAGFEEAPFFVAAIISGVGLTVAWRPLRKL 597
+Q+ + FL+ L+ + F + Y +D +F+W L+I +R ++PK L E+ L G F Y + W +Y + FGS+ + KPCLQAIM++F+ +QG L G + S+ I V + TQ FS + S+ F APF ++ + + V + R K+
Sbjct: 243 VQLLGASFLYQLAFHSFTSIWAYYMID-KFNWGALQIGGSLLFVGLTNFFVQNVLIRFLLPK-LGEQKTFLLGASFIIPAFFAYATVSIDWFVYIIIVFGSLGALMKPCLQAIMSSFLPYHKQGELM-GVITSINGISLMVGPLIMTQTFSFFKTNDSSSFLGAPFILSMLFAIVATIIVLRVFSKM 426
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: A0A7W8ZQ49_9SPHI (DHA1 family tetracycline resistance protein-like MFS transporter n=2 Tax=Pedobacter cryoconitis TaxID=188932 RepID=A0A7W8ZQ49_9SPHI) HSP 1 Score: 63.5 bits (153), Expect = 2.300e-8 Identity = 46/189 (24.34%), Postives = 86/189 (45.50%), Query Frame = 1
Query: 40 PRVLLQVAFSYFLFVLSLNVFAAGYNYLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARG-WMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQ---QGAVMSLRVIGEGVAGPLFTQIFSASSSAGFEEAPFFVAAIISGVGLTVAWRPLRK 594
P ++ +A + L++ + +V Y+ +FHW I Y ++A+ G LR + ++ +G+++ F + A G WML L +G + I P +Q++++ V + QG LQ G +IG + F S+ F APF +A+++ VGL +A++ + K
Sbjct: 215 PAIIGLLAALFLLYIANQSVNTNWSYYVIEKFHWDSTMIGYSLGLVGLVLAVVQGGLLRFITTNN-HQKLAIYYGLILYIIGFICFAFAANGTWMLLFILPYG-LAGIGGPAMQSLISNHVAPNSQGELQGITTGLQSLAAIIGPWLVSKGFVYFTGPSAPVYFPGAPFIFSAVLTLVGLIIAFKTINK 401
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: A0A3L7V5H5_9BACT (MFS transporter n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V5H5_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 1.030e-7 Identity = 58/182 (31.87%), Postives = 86/182 (47.25%), Query Frame = 1
Query: 49 LLQVAFSYFLFVLSLNVFAAGYN-YLDFRFHWSPLEISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQQGAVMSLRVIGEGVAGPL-FTQIFSAS--SSAGFEE--APFFVAAIISGVGLTVA 576
LL +A S F + L+ +VF++ + Y D RF W+P ++ A L I G +R ++ L E G++ FT YG+ G + + +Q +M+ + QG L GA SL I G+ GPL FT +F A+ GF APFF+AA++ GVGL A
Sbjct: 200 LLPMAISLFTYQLAHSVFSSVFVLYTDKRFLWTPGQVGQALAIVGILNFIVQGALIRPLMGI-LGERWMVFIGLIGGILGFTAYGIVDTGELFMASTVIFCTMGFFSAAIQGLMSKRMDPSMQGQLS-GANSSLNGIA-GMIGPLLFTSVFRATIDPQGGFHVPGAPFFLAAVVLGVGLLTA 378
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Match: UPI00164AE120 (MFS transporter n=1 Tax=Undibacterium hunanense TaxID=2762292 RepID=UPI00164AE120) HSP 1 Score: 60.8 bits (146), Expect = 1.940e-7 Identity = 44/162 (27.16%), Postives = 73/162 (45.06%), Query Frame = 1
Query: 124 DFRFHWSPLE--ISYFFATFNALMAIAGGWGLRCVVPKRLSEENGALFGILIQGCTFTVYGLCARGWMLYPALAFGSIQNITKPCLQAIMATFVTVDRQGSLQ---QGAVMSLRVIGEGVAGPLFTQIFSASSSAGFEEAPFFVAAIISGVGLTVAWRPLRK 594
+ RF W+P++ +S F ++++ + G + R + KR+ + N L G+ T+YGL +GWM+Y + + P LQ + V QG G + V + L Q+ + APFF+AA + + LT+A R LRK
Sbjct: 249 ELRFGWTPMQNGLSLFMVGISSVL-MQGVFLGRYI--KRVGDANAVLIGLASSAIALTMYGLANQGWMMYVLILCNVLAFAAGPALQGFFSRAVDARSQGIAMGSLTGLASIMSVFATLIGTSLVGQVSHLDKGSVLLGAPFFLAATVQVMALTLAMRHLRK 407 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig678.16358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig678.16358.1 >prot_M-pyrifera_M_contig678.16358.1 ID=prot_M-pyrifera_M_contig678.16358.1|Name=mRNA_M-pyrifera_M_contig678.16358.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp MPSPRAELRDHTKPRVLLQVAFSYFLFVLSLNVFAAGYNYLDFRFHWSPLback to top mRNA from alignment at M-pyrifera_M_contig678:41..3213+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig678.16358.1 ID=mRNA_M-pyrifera_M_contig678.16358.1|Name=mRNA_M-pyrifera_M_contig678.16358.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3173bp|location=Sequence derived from alignment at M-pyrifera_M_contig678:41..3213+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig678:41..3213+ >mRNA_M-pyrifera_M_contig678.16358.1 ID=mRNA_M-pyrifera_M_contig678.16358.1|Name=mRNA_M-pyrifera_M_contig678.16358.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig678:41..3213+ (Macrocystis pyrifera P11B4 male)back to top |