mRNA_M-pyrifera_M_contig67774.16350.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67774.16350.1
Unique NamemRNA_M-pyrifera_M_contig67774.16350.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A3P8MCK6_TSUPA (Phage T7 F exclusion suppressor FxsA n=7 Tax=Tsukamurella TaxID=2060 RepID=A0A3P8MCK6_TSUPA)

HSP 1 Score: 60.1 bits (144), Expect = 2.550e-8
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   37 MVAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARATSWSVPFINRSGPTASSRRGPSGDGPFIDVDIVA 453
            +V E  A + ++  +GFG  +L +I    LGV ++R  AAG+L   +  A +       A+   A+  AA  L+AVPG VS+A GL+LL+ PVR +  P +A         F+  SG        P G G  +D D+++
Sbjct:   10 LVVEIAAFAGLVSWLGFGWAVLAIIGATVLGVVMLRRTAAGVL-RDLGRALDGQRSAGPALMDTAILAAAVFLLAVPGVVSTALGLLLLVKPVRAVVRPAVAYVGAKRVASFVEESGLVTVLAGQPRGYGTVVDGDVMS 147          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A138AX29_9ACTN (Uncharacterized protein n=2 Tax=Tsukamurella TaxID=2060 RepID=A0A138AX29_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.790e-7
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   37 MVAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARATSWSVPFINRSGPTASSRRGPSGDGPFIDVDIVA 453
            +V E  A + ++  + FG  LL++IA   +GV ++R  AAG+L   +  A +       A+   A+   +  L+AVPG VS+A GL+LL+ PVR +  P +A         F+  SG        P G G  +D D+V+
Sbjct:   10 IVVEIAAFAGLVAWLNFGWALLVMIAATAIGVLMLRRTAAGVL-RDLGEALDGQRSAGPALMDTAILATSVFLLAVPGVVSTALGLLLLVKPVRAVVRPVVAYVGAKRVASFVEESGLVTVLAGQPRGFGTVVDGDVVS 147          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A6J7PIU1_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J7PIU1_9ZZZZ)

HSP 1 Score: 57.0 bits (136), Expect = 2.340e-7
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   43 AEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAAR 348
            AE + A  V  Q+G   T+ +++ LG  G  V+R    G +  T  S       T   I G  LG AAG+L+ +PGF+S+AFG++LLL P+R L    +  R
Sbjct:   15 AELYVALQVAHQIGALETVFVLVGLGLFGAWVIRRAGMGAIARTFASLAEGRSPTDDMINGG-LGFAAGLLLFIPGFISAAFGVLLLLPPIRALLRSTIRTR 115          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: UPI001C7D7438 (FxsA family protein n=1 Tax=Tsukamurella sp. TY48 TaxID=2775495 RepID=UPI001C7D7438)

HSP 1 Score: 57.0 bits (136), Expect = 3.670e-7
Identity = 47/136 (34.56%), Postives = 68/136 (50.00%), Query Frame = 1
Query:   40 VAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARATSWSVPFINRSGPTASSRRGPSGDGPFIDVDI 447
            V E  A + ++  +GFG  LL VIA   +GV ++R  AAG+L   + +A +       A+   AL  A+  L+AVPG VS+A GL+LL+ PVR +  P  A         F+  SG        P G G  +D  +
Sbjct:   11 VVEIAAFAGLVAWLGFGWALLTVIAATAIGVLMLRRTAAGVL-RDLGAALDGRKSAGPALMDTALLAASVFLLAVPGVVSTALGLVLLVKPVRAVIRPVAAYVGAKRIAHFVEESGLVTVLAGQPRGFGTVVDGSV 145          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A522NS61_9MYCO (Membrane protein FxsA n=1 Tax=Mycobacterium sp. TaxID=1785 RepID=A0A522NS61_9MYCO)

HSP 1 Score: 56.6 bits (135), Expect = 4.890e-7
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 1
Query:    1 MFSRSAVAIFIVMVAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARAT----------SWSVPFINRSGPTASSRRGPSGDG----PFIDVDIV 450
            M SR  +   +V +A  FA   ++  +G+G TLL+++A   LG  +V   A   L+  I    +   E  +A    AL   A +L+ VPG VS+AFGL+LL+ PVR  A P L A A           S++  F   S P +S      GDG     +ID +++
Sbjct:    1 MVSRLLLIYAVVELAVIFA---LVSTIGWGWTLLVLLATFVLGWGIVAPMAGSHLIRRIGQLRSGLTEPRNAAGDSALVSLAALLVLVPGLVSTAFGLLLLIPPVRSAAAPGLGAMAVRTLQRRMPGISYATAFRADSHPASSPTGAYPGDGRGHGDYIDGEVI 161          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A1A2SRT0_9MYCO (Membrane protein FxsA n=3 Tax=Mycobacterium mantenii TaxID=560555 RepID=A0A1A2SRT0_9MYCO)

HSP 1 Score: 55.5 bits (132), Expect = 1.240e-6
Identity = 44/137 (32.12%), Postives = 66/137 (48.18%), Query Frame = 1
Query:   70 IGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARAT----------SWSVPFINRSGPTASSRRGPSGDGPFIDVDIV 450
            +  +G+G TLL+++A   LG  VV   A   L+  I    +   E  +A    AL   A +L+ VPG VS+A GL+LL+ PVR    P L A A           S++  F   S P +      +G G +ID +++
Sbjct:   21 VSTIGWGWTLLVLLATFLLGWGVVAPMAGSRLIRRIGQLRSGLTEQPAAAGDGALVSLAALLVLVPGLVSTALGLLLLIPPVRSTVRPGLTAMAVRTLQRQMPGLSYASAFRAESYPASYPSGSTAGHGDYIDGEVI 157          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: UPI001EEF6B2C (membrane protein FxsA n=2 Tax=Mycobacterium TaxID=1763 RepID=UPI001EEF6B2C)

HSP 1 Score: 54.7 bits (130), Expect = 2.370e-6
Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    1 MFSRSAVAIFIVMVAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARAT----------SWSVPFINRSGPTASSRRGPSGDGPFIDVDIV 450
            M SR  +   +V +A  FA   ++  +G+G TLL ++A   LG  +V   A   L+  I    +    + +A    AL   A +L+ +PG VS+A GL+LL+ PVR +A P L A A           S++  F +   P AS      G G +ID +++
Sbjct:    1 MVSRLLLIYAVVELAVIFA---LVSTIGWGWTLLTLLATFLLGWGIVAPMAGSHLIRRIGQLRSGFAGSRNAAGDGALVSVAALLVLIPGLVSTALGLLLLIPPVRSVAGPGLGAIAVRTLRRQMPGISYATTFRSNPYPAASYPGDARGHGDYIDGEVI 157          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A7K0KMR4_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A7K0KMR4_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 3.620e-6
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   43 AEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVS----TIESAT--NSSVETTSAIAGRALGLA-----AGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAA 345
            AE+ AASW+ G +G+G  +L++  L  +G AVVR   +  L S    T+E         +    + GR +G A     AG+LIAVPG V+SA G+ILL+ PVRR+    + A
Sbjct:   53 AEWCAASWLAGLIGWGGVVLVMACLLVIGSAVVRRAGSSALASLRPVTVEGIVVMPGMTQERMGLVGREVGDAGTKAVAGLLIAVPGLVTSALGMILLIPPVRRVVRTKVGA 164          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: UPI0003017389 (FxsA family protein n=1 Tax=Tsukamurella sp. 1534 TaxID=1151061 RepID=UPI0003017389)

HSP 1 Score: 53.9 bits (128), Expect = 4.450e-6
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1
Query:   40 VAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAARATSWSVPFINRSG 387
            V E  A + ++  +GFG  LL +IA   +GV ++R  AAG+L   +  A +       A+   A+   A  L+AVPG VS+A GL+LL+ PVR L  P +A         F+  SG
Sbjct:   11 VVEIAAFAGLVAWLGFGWALLTIIAATAIGVLMLRRTAAGVL-QDLGEALDGQRSAGPALMDTAILAGAVFLLAVPGVVSTALGLLLLVKPVRALVRPAVAYVGAKRVARFVEESG 125          
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Match: A0A1A2A3E7_9MYCO (Membrane protein FxsA n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A1A2A3E7_9MYCO)

HSP 1 Score: 53.5 bits (127), Expect = 6.450e-6
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   70 IGQVGFGTTLLLVIALGFLGVAVVRWKAAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLILLLTPVRRLAEPFLAA---RATSWSVPFINRSGPTASS-RRGPSGDGP--FIDVDIV 450
            +  VG+G TLL ++A   L   V+   A   LV  +    +      SA++   +   A +LI VPG V++A GL+LL+ P+R+LA P LAA   R     +P I  +    +  RRG  GDGP  +ID ++V
Sbjct:   21 VSTVGWGWTLLALLATSLLAWGVLAPMAGSQLVRQLRQLRSDP----SALSDGTMVTLAAVLILVPGLVTTALGLLLLVPPIRKLARPGLAALGVRGLRRRMPLITDARLFGTDGRRGYPGDGPADYIDGEVV 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67774.16350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P8MCK6_TSUPA2.550e-833.09Phage T7 F exclusion suppressor FxsA n=7 Tax=Tsuka... [more]
A0A138AX29_9ACTN1.790e-732.37Uncharacterized protein n=2 Tax=Tsukamurella TaxID... [more]
A0A6J7PIU1_9ZZZZ2.340e-737.25Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]
UPI001C7D74383.670e-734.56FxsA family protein n=1 Tax=Tsukamurella sp. TY48 ... [more]
A0A522NS61_9MYCO4.890e-732.93Membrane protein FxsA n=1 Tax=Mycobacterium sp. Ta... [more]
A0A1A2SRT0_9MYCO1.240e-632.12Membrane protein FxsA n=3 Tax=Mycobacterium manten... [more]
UPI001EEF6B2C2.370e-631.25membrane protein FxsA n=2 Tax=Mycobacterium TaxID=... [more]
A0A7K0KMR4_9ACTN3.620e-639.29Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
UPI00030173894.450e-636.21FxsA family protein n=1 Tax=Tsukamurella sp. 1534 ... [more]
A0A1A2A3E7_9MYCO6.450e-635.34Membrane protein FxsA n=2 Tax=Mycobacterium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67774contigM-pyrifera_M_contig67774:746..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.0709548-CDS-M-pyrifera_M_contig67774:745..11981622816568.0709548-CDS-M-pyrifera_M_contig67774:745..1198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67774 746..1198 +
1692278051.4609163-CDS-M-pyrifera_M_contig67774:745..11981692278051.4609163-CDS-M-pyrifera_M_contig67774:745..1198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67774 746..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67774.16350.1prot_M-pyrifera_M_contig67774.16350.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67774 746..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67774.16350.1

>prot_M-pyrifera_M_contig67774.16350.1 ID=prot_M-pyrifera_M_contig67774.16350.1|Name=mRNA_M-pyrifera_M_contig67774.16350.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MFSRSAVAIFIVMVAEFFAASWVIGQVGFGTTLLLVIALGFLGVAVVRWK
AAGLLVSTIESATNSSVETTSAIAGRALGLAAGILIAVPGFVSSAFGLIL
LLTPVRRLAEPFLAARATSWSVPFINRSGPTASSRRGPSGDGPFIDVDIV
A
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mRNA from alignment at M-pyrifera_M_contig67774:746..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67774.16350.1 ID=mRNA_M-pyrifera_M_contig67774.16350.1|Name=mRNA_M-pyrifera_M_contig67774.16350.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig67774:746..1198+ (Macrocystis pyrifera P11B4 male)
ATGTTCTCACGCTCGGCAGTTGCGATCTTCATCGTCATGGTCGCCGAGTT CTTTGCCGCCTCGTGGGTGATCGGCCAAGTCGGCTTCGGCACGACACTCC TTCTCGTCATCGCCCTGGGCTTTCTCGGCGTGGCCGTCGTTCGATGGAAG GCCGCCGGACTCCTCGTCTCCACGATCGAGTCTGCGACCAACTCGTCGGT CGAGACCACCTCGGCCATCGCCGGACGCGCCCTCGGCCTGGCCGCCGGCA TCCTGATCGCCGTTCCCGGGTTCGTGTCATCCGCCTTCGGGCTGATCCTT CTTCTCACACCGGTTCGCCGTCTGGCAGAACCATTCCTCGCGGCACGGGC GACCAGCTGGTCCGTGCCCTTCATCAACCGCTCAGGGCCGACCGCATCAT CGCGTCGCGGCCCATCGGGCGATGGACCCTTCATCGACGTCGACATCGTC GCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67774:746..1198+

>mRNA_M-pyrifera_M_contig67774.16350.1 ID=mRNA_M-pyrifera_M_contig67774.16350.1|Name=mRNA_M-pyrifera_M_contig67774.16350.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig67774:746..1198+ (Macrocystis pyrifera P11B4 male)
ATGTTCTCACGCTCGGCAGTTGCGATCTTCATCGTCATGGTCGCCGAGTT
CTTTGCCGCCTCGTGGGTGATCGGCCAAGTCGGCTTCGGCACGACACTCC
TTCTCGTCATCGCCCTGGGCTTTCTCGGCGTGGCCGTCGTTCGATGGAAG
GCCGCCGGACTCCTCGTCTCCACGATCGAGTCTGCGACCAACTCGTCGGT
CGAGACCACCTCGGCCATCGCCGGACGCGCCCTCGGCCTGGCCGCCGGCA
TCCTGATCGCCGTTCCCGGGTTCGTGTCATCCGCCTTCGGGCTGATCCTT
CTTCTCACACCGGTTCGCCGTCTGGCAGAACCATTCCTCGCGGCACGGGC
GACCAGCTGGTCCGTGCCCTTCATCAACCGCTCAGGGCCGACCGCATCAT
CGCGTCGCGGCCCATCGGGCGATGGACCCTTCATCGACGTCGACATCGTC
GCCATGTTCTCACGCTCGGCAGTTGCGATCTTCATCGTCATGGTCGCCGA
GTTCTTTGCCGCCTCGTGGGTGATCGGCCAAGTCGGCTTCGGCACGACAC
TCCTTCTCGTCATCGCCCTGGGCTTTCTCGGCGTGGCCGTCGTTCGATGG
AAGGCCGCCGGACTCCTCGTCTCCACGATCGAGTCTGCGACCAACTCGTC
GGTCGAGACCACCTCGGCCATCGCCGGACGCGCCCTCGGCCTGGCCGCCG
GCATCCTGATCGCCGTTCCCGGGTTCGTGTCATCCGCCTTCGGGCTGATC
CTTCTTCTCACACCGGTTCGCCGTCTGGCAGAACCATTCCTCGCGGCACG
GGCGACCAGCTGGTCCGTGCCCTTCATCAACCGCTCAGGGCCGACCGCAT
CATCGCGTCGCGGCCCATCGGGCGATGGACCCTTCATCGACGTCGACATC
GTCGCC
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