mRNA_M-pyrifera_M_contig67747.16346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67747.16346.1
Unique NamemRNA_M-pyrifera_M_contig67747.16346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67747.16346.1 vs. uniprot
Match: A0A7S1QRT4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QRT4_ALECA)

HSP 1 Score: 61.2 bits (147), Expect = 2.310e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   28 NIRTFHVFTGARQLWGWDAVAMEPMSAMADAYNNHRQGFDVVPGAGRAVKRWGIRLE 198
            + R   +FTGA+  WG DAV +EP+SAM+DAYNNH  G  V+        R+G+R+E
Sbjct:  325 SFRYLQIFTGAKATWGADAVVLEPLSAMSDAYNNH-DGLHVISAGETFSSRFGVRVE 380
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BLAST of mRNA_M-pyrifera_M_contig67747.16346.1 vs. uniprot
Match: A0A0M0K1W3_9EUKA (Aldose 1-epimerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1W3_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 2.850e-8
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   10 LWGERANIRTFHVFTGARQLWGWDAVAMEPMSAMADAYNN 129
            LW +R +  T  +FTG+++LWGW A+A+EPMSA+ADAYNN
Sbjct:  326 LWADRQHAVT-QIFTGSQELWGWSAIALEPMSALADAYNN 364
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BLAST of mRNA_M-pyrifera_M_contig67747.16346.1 vs. uniprot
Match: A0A7S1FEZ2_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FEZ2_NOCSC)

HSP 1 Score: 50.8 bits (120), Expect = 1.100e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   10 LWGERANIRTFHVFTGARQLWGWDAVAMEPMSAMADAYNNHRQGFDVVPGAG 165
            LWG++  +  + VFTGA +LWG  +VA+EPMS +ADA+NN   G  V+   G
Sbjct:  309 LWGDKYPV--WQVFTGAEELWGSSSVAVEPMSGLADAFNNG-VGLTVLSAGG 357
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BLAST of mRNA_M-pyrifera_M_contig67747.16346.1 vs. uniprot
Match: A0A7S3EQS1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EQS1_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 1.540e-5
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 LWGERANIRTFHVFTGARQLWGWDAVAMEPMSAMADAYNNHRQGFDVVPGAGRAVKRWGIRLE 198
            LW + A ++   V+TGA   +G DAV +EP+SAM+DA+NNH  G  ++         +GIR+E
Sbjct:   76 LWHQSAYLQ---VWTGALSAFGVDAVVLEPLSAMSDAFNNH-DGLHMLSAGQSFRDAFGIRIE 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67747.16346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1QRT4_ALECA2.310e-947.37Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A0M0K1W3_9EUKA2.850e-860.00Aldose 1-epimerase n=1 Tax=Chrysochromulina tobini... [more]
A0A7S1FEZ2_NOCSC1.100e-548.08Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S3EQS1_9EUKA1.540e-541.27Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67747contigM-pyrifera_M_contig67747:24..224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.8959286-CDS-M-pyrifera_M_contig67747:23..2241622816567.8959286-CDS-M-pyrifera_M_contig67747:23..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67747 24..224 +
1692278051.3804657-CDS-M-pyrifera_M_contig67747:23..2241692278051.3804657-CDS-M-pyrifera_M_contig67747:23..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67747 24..224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67747.16346.1prot_M-pyrifera_M_contig67747.16346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67747 24..224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67747.16346.1

>prot_M-pyrifera_M_contig67747.16346.1 ID=prot_M-pyrifera_M_contig67747.16346.1|Name=mRNA_M-pyrifera_M_contig67747.16346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
KATLWGERANIRTFHVFTGARQLWGWDAVAMEPMSAMADAYNNHRQGFDV
VPGAGRAVKRWGIRLE*
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mRNA from alignment at M-pyrifera_M_contig67747:24..224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67747.16346.1 ID=mRNA_M-pyrifera_M_contig67747.16346.1|Name=mRNA_M-pyrifera_M_contig67747.16346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig67747:24..224+ (Macrocystis pyrifera P11B4 male)
AAAGCCACTCTGTGGGGGGAGAGGGCCAACATTCGCACCTTCCACGTGTT
CACGGGGGCCAGACAACTCTGGGGGTGGGACGCAGTCGCCATGGAACCCA
TGAGCGCTATGGCAGACGCCTACAACAACCACAGGCAAGGCTTCGACGTC
GTCCCTGGAGCGGGGAGAGCCGTCAAACGGTGGGGCATCAGACTCGAGTG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67747:24..224+

>mRNA_M-pyrifera_M_contig67747.16346.1 ID=mRNA_M-pyrifera_M_contig67747.16346.1|Name=mRNA_M-pyrifera_M_contig67747.16346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig67747:24..224+ (Macrocystis pyrifera P11B4 male)
AAAGCCACTCTGTGGGGGGAGAGGGCCAACATTCGCACCTTCCACGTGTT
CACGGGGGCCAGACAACTCTGGGGGTGGGACGCAGTCGCCATGGAACCCA
TGAGCGCTATGGCAGACGCCTACAACAACCACAGGCAAGGCTTCGACGTC
GTCCCTGGAGCGGGGAGAGCCGTCAAACGGTGGGGCATCAGACTCGAGTG
AAAAGCCACTCTGTGGGGGGAGAGGGCCAACATTCGCACCTTCCACGTGT
TCACGGGGGCCAGACAACTCTGGGGGTGGGACGCAGTCGCCATGGAACCC
ATGAGCGCTATGGCAGACGCCTACAACAACCACAGGCAAGGCTTCGACGT
CGTCCCTGGAGCGGGGAGAGCCGTCAAACGGTGGGGCATCAGACTCGAGT
GA
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