mRNA_M-pyrifera_M_contig6772.16342.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6772.16342.1
Unique NamemRNA_M-pyrifera_M_contig6772.16342.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: D7FGP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.980e-36
Identity = 58/84 (69.05%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 DRARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            +R RRVQREMM  ++NPH+AFEV PSD+++ FWK ++ GP STPY+ GCWMLS++FPP YPSVAP +RFITPI+HCNIN+HGRV
Sbjct:  545 ERQRRVQREMMDWMKNPHQAFEVFPSDENMHFWKVLVHGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRV 628          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A0G4HFP5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HFP5_9ALVE)

HSP 1 Score: 105 bits (261), Expect = 1.840e-24
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   10 RRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            RR+  EM  + R PH    +LPS +DL FWK ++TGPE TPY GG W+  + FPP +P+ AP++RF+TPI HCN+N HGR+
Sbjct: 1863 RRLALEMKRLQREPHPNIRILPSSEDLTFWKLLVTGPEGTPYGGGNWLCYVSFPPDFPARAPEVRFVTPILHCNVNRHGRI 1943          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A813LMK5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LMK5_POLGL)

HSP 1 Score: 103 bits (256), Expect = 1.940e-24
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    4 RARRVQREMMSMIRNPHEAFEVLP---SDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            R RR+ REM  ++R PH A++V P   +D   C W+ I+ GP  +PY GGCW+L   FPP YP+ APD+RF+T I+HCN+NAHGRV
Sbjct:  132 RVRRLAREMGRLLREPHMAYDVFPGVGADALSC-WRVIMEGPADSPYAGGCWLLYALFPPEYPNKAPDVRFVTRIRHCNVNAHGRV 216          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A7S0AFI0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO)

HSP 1 Score: 104 bits (260), Expect = 2.490e-24
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    4 RARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            R RR   E+   + +PH + EV PS+ DL FWK +L GPE TPY+GG W+L  + PP YP+  P +RF+TPI+HCN+NAHGRV
Sbjct:  943 RRRRAVAELGQFLASPHPSIEVFPSE-DLFFWKLLLEGPEGTPYQGGVWVLYCHLPPEYPACPPQVRFVTPIRHCNVNAHGRV 1024          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A812TJ48_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TJ48_9DINO)

HSP 1 Score: 103 bits (256), Expect = 2.850e-24
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 DRARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            +R+RR+  EM  + R PH AF++ P+  D+  WK  ++GPE TPY GG W+L + FP  +P   P+IRFITPI+HCNIN HGRV
Sbjct:  207 ERSRRILAEMRHLHREPHPAFDIFPNCDDIGCWKVTVSGPEGTPYTGGVWLLYIIFPAEFPVEPPEIRFITPIKHCNINQHGRV 290          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A1Q9E8K8_SYMMI (Anaphase-promoting complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI)

HSP 1 Score: 102 bits (255), Expect = 1.200e-23
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   10 RRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            RR+  EM  + R PH AF++ P   D+ FWK  ++GP+ TPY GG W++ + FPP +P   P++RFITPI+HCNIN HGRV
Sbjct: 3241 RRILAEMRYLHREPHPAFDIFPGCDDVGFWKVTVSGPDGTPYAGGVWLIYVVFPPEFPVEPPEVRFITPIKHCNINQHGRV 3321          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A3G4ZPG5_9VIRU (E2 ubiquitin-conjugating enzyme n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZPG5_9VIRU)

HSP 1 Score: 102 bits (254), Expect = 1.620e-23
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 DRARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            D  + +Q+E++++ +NPH   +V  +DKD+ FWK ++ GP  TPY+ GC++  + FP +YP VAP+IRF+TPI+HCNIN +GRV
Sbjct: 1180 DSCKVIQKELIALQKNPHPDIDVYINDKDMYFWKIVIKGPNGTPYQNGCYLAYIQFPQTYPLVAPNIRFVTPIKHCNINNYGRV 1263          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A6B2LAL7_9EUKA (UBC core domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAL7_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 1.780e-23
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    4 RARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            R R +  +M  +I+ PH + E+ P D D+ FW+AIL GP  TPY  G W++ + FP +YP+ AP++RF+TPI+HCN+N +G+V
Sbjct:  108 REREILFQMKKLIQEPHPSIEIYPCDADIGFWRAILQGPSDTPYHNGVWLVYVLFPSTYPAEAPEVRFVTPIRHCNVNQYGKV 190          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A812WFX1_9DINO (Anaphase-promoting complex subunit 11 n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WFX1_9DINO)

HSP 1 Score: 101 bits (252), Expect = 3.020e-23
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    4 RARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            R  R+  EM  + R PH AF+V PS  D+ FWK  ++GP+ TPY GG W+L + FP  +P   P++RFITPI+HCNIN HGRV
Sbjct: 1512 RRTRILAEMRYLHREPHPAFDVFPSCDDIGFWKVTVSGPDGTPYAGGVWLLYVVFPTEFPVEPPEVRFITPIKHCNINQHGRV 1594          
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Match: A0A812XS93_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XS93_SYMPI)

HSP 1 Score: 100 bits (249), Expect = 7.710e-23
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 RARRVQREMMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPSYPSVAPDIRFITPIQHCNINAHGRV 252
            R RR+  EM  +   PH AF++ PS  D+  WKA ++GPE TPY  G W+L + FP  +P   P++RFITPI+HCNIN HGRV
Sbjct:  895 RTRRIMAEMRILHTEPHPAFDIFPSCDDISCWKATVSGPEGTPYADGVWLLYIIFPQQFPVEPPEVRFITPIKHCNINQHGRV 977          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6772.16342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGP8_ECTSI5.980e-3669.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4HFP5_9ALVE1.840e-2453.09Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A813LMK5_POLGL1.940e-2453.49Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A7S0AFI0_9DINO2.490e-2454.22Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A812TJ48_9DINO2.850e-2452.38Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A1Q9E8K8_SYMMI1.200e-2351.85Anaphase-promoting complex subunit 11 n=2 Tax=Symb... [more]
A0A3G4ZPG5_9VIRU1.620e-2348.81E2 ubiquitin-conjugating enzyme n=1 Tax=Terrestriv... [more]
A0A6B2LAL7_9EUKA1.780e-2346.99UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A812WFX1_9DINO3.020e-2353.01Anaphase-promoting complex subunit 11 n=1 Tax=Symb... [more]
A0A812XS93_SYMPI7.710e-2351.81Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6772contigM-pyrifera_M_contig6772:679..1661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog2880.D7FGP8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size252
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6772.16342.1prot_M-pyrifera_M_contig6772.16342.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6772 679..1634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.6360493-CDS-M-pyrifera_M_contig6772:678..8731622816567.6360493-CDS-M-pyrifera_M_contig6772:678..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6772 679..873 -
1692278051.220346-CDS-M-pyrifera_M_contig6772:678..8731692278051.220346-CDS-M-pyrifera_M_contig6772:678..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6772 679..873 -
1622816567.6466746-CDS-M-pyrifera_M_contig6772:1604..16341622816567.6466746-CDS-M-pyrifera_M_contig6772:1604..1634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6772 1605..1634 -
1692278051.232423-CDS-M-pyrifera_M_contig6772:1604..16341692278051.232423-CDS-M-pyrifera_M_contig6772:1604..1634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6772 1605..1634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.6575563-UTR-M-pyrifera_M_contig6772:1634..16611622816567.6575563-UTR-M-pyrifera_M_contig6772:1634..1661Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6772 1635..1661 -
1692278051.2424543-UTR-M-pyrifera_M_contig6772:1634..16611692278051.2424543-UTR-M-pyrifera_M_contig6772:1634..1661Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6772 1635..1661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6772.16342.1

>prot_M-pyrifera_M_contig6772.16342.1 ID=prot_M-pyrifera_M_contig6772.16342.1|Name=mRNA_M-pyrifera_M_contig6772.16342.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MMSMIRNPHEAFEVLPSDKDLCFWKAILTGPESTPYKGGCWMLSLYFPPS
YPSVAPDIRFITPIQHCNINAHGRV
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mRNA from alignment at M-pyrifera_M_contig6772:679..1661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6772.16342.1 ID=mRNA_M-pyrifera_M_contig6772.16342.1|Name=mRNA_M-pyrifera_M_contig6772.16342.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=983bp|location=Sequence derived from alignment at M-pyrifera_M_contig6772:679..1661- (Macrocystis pyrifera P11B4 male)
GATCGTGCGCGGCGCGTTCAGCGAGAAATGATGAGCATGATCAGGAATCC TCACGAGGTGAGAGGGGGCAGGTTCAGCCGCTTTTGAGTCACGCTTCCGT AGAGGGGTGCCGTTTTTCTCCAAGGTTTCCTTAACACGAGGGGCTGCAAC CGCACCAAAAAATAAGACGACCGTGAAAAATATTGATTTCGATTGTCCAC CCGTAGTGACAACCACACCCAAGCCAGCTAGTCTGCACCCCACCCCCCAC CCCTCACGTTCGCCGAAGTGTTTTTCTCCGTTGATTTTGCCTTTCTATCT GTATACGAATCAGTACGTATGTTGTTGTTCTTCCGATTAACAATCGCATG TGTTCGGTATTAAACAAAATTCTCGACAGTAAAACACAAAATGGGACCGC AAATTTACTGAGTAGCACCTCAGCTGAAAAGCCCCATTGATGAAATATTT GGATCCAGAATTATCTCCTCCCCCTACCGTAGCCTGACTACAGTACTTTA TACCTGGCCGTGTTTAGGAGTGGCCTTCTTGCTATCGACCGGTCATCGTT CGCTCTTTTACTGTACCGGTATCGTGTTTACTATTGTACGAAGCACATGC TTTGCAAGCCCTTGTTTGCGCTTCAAAAGTTTCGTCGTGGGCTTGTCAAG GAGAAAAGTTTCTACCAGCGACATCCAAGACGGAAACGTTTAGGCTGTCG AAATCCTCTGGTGTCGCCGTGGTGACGCCCTGTCGCTGCTGCCCCCCCCT CCCCGCTCCCTGCCTCCAACTCCTGCACGTTACTTCAGGCGTTCGAGGTA TTACCAAGCGACAAAGACTTGTGCTTCTGGAAAGCCATCCTCACGGGCCC AGAGTCTACCCCCTACAAGGGAGGATGTTGGATGCTCAGCTTGTACTTTC CACCCAGCTACCCTTCTGTTGCTCCCGACATTCGCTTCATCACCCCCATC CAGCACTGCAACATCAACGCCCACGGAAGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6772:679..1661-

>mRNA_M-pyrifera_M_contig6772.16342.1 ID=mRNA_M-pyrifera_M_contig6772.16342.1|Name=mRNA_M-pyrifera_M_contig6772.16342.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig6772:679..1661- (Macrocystis pyrifera P11B4 male)
ATGATGAGCATGATCAGGAATCCTCACGAGATGATGAGCATGATCAGGAA
TCCTCACGAGGCGTTCGAGGTATTACCAAGCGACAAAGACTTGTGCTTCT
GGAAAGCCATCCTCACGGGCCCAGAGTCTACCCCCTACAAGGGAGGATGT
TGGATGCTCAGCTTGTACTTTCCACCCAGCTACCCTTCTGTTGCTCCCGA
CATTCGCTTCATCACCCCCATCCAGCACTGCAACATCAACGCCCACGGAA
GGGTGGCGTTCGAGGTATTACCAAGCGACAAAGACTTGTGCTTCTGGAAA
GCCATCCTCACGGGCCCAGAGTCTACCCCCTACAAGGGAGGATGTTGGAT
GCTCAGCTTGTACTTTCCACCCAGCTACCCTTCTGTTGCTCCCGACATTC
GCTTCATCACCCCCATCCAGCACTGCAACATCAACGCCCACGGAAGGGTG
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