mRNA_M-pyrifera_M_contig67714.16341.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67714.16341.1
Unique NamemRNA_M-pyrifera_M_contig67714.16341.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67714.16341.1 vs. uniprot
Match: G7L107_MEDTR (LRR receptor-like kinase n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7L107_MEDTR)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-5
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   31 SFWSIPT-LQHLD-LSYIPLGDTNVSASRI----KAPLQSLRLAHTGVSTALLRSLCSADSPLLPTLRVLDMSFSNLRDEIPDCIGNFSALTE 291
            +F  IPT ++ LD L ++ L + N+++       KA LQSL ++H  +S  +  S+C      L +L  LD+SF+NLRD IP C+GNFS   E
Sbjct:  478 NFVEIPTFIRDLDDLEFLMLSNNNITSLPNWLWKKASLQSLDVSHNSLSGEISPSICD-----LKSLATLDLSFNNLRDNIPSCLGNFSQSLE 565
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67714.16341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
G7L107_MEDTR3.440e-539.78LRR receptor-like kinase n=2 Tax=Medicago truncatu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67714contigM-pyrifera_M_contig67714:369..1238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size870
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.5988195-CDS-M-pyrifera_M_contig67714:368..12381622816567.5988195-CDS-M-pyrifera_M_contig67714:368..1238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67714 369..1238 -
1692278051.2094162-CDS-M-pyrifera_M_contig67714:368..12381692278051.2094162-CDS-M-pyrifera_M_contig67714:368..1238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67714 369..1238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67714.16341.1prot_M-pyrifera_M_contig67714.16341.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67714 369..1238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67714.16341.1

>prot_M-pyrifera_M_contig67714.16341.1 ID=prot_M-pyrifera_M_contig67714.16341.1|Name=mRNA_M-pyrifera_M_contig67714.16341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=290bp
RTDLSGPLHDSFWSIPTLQHLDLSYIPLGDTNVSASRIKAPLQSLRLAHT
GVSTALLRSLCSADSPLLPTLRVLDMSFSNLRDEIPDCIGNFSALTELDL
GSNDLEGYVPATISALQQLETVDLSRNKLEGLKDMDVCAMPVLRRLYLGN
NDLRELPKITCASCTGLDLEILDLSSNNLQAPQVASFLPIVGQTQVVSLR
SNILTVLDFDRIYECSPVPEDAALRTLDVSQNRLSALNCVKGPSSHGSYD
FSISTLLASGNDLTSDQAGDCLATGTWPVLQEVDLSSNQL
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mRNA from alignment at M-pyrifera_M_contig67714:369..1238-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67714.16341.1 ID=mRNA_M-pyrifera_M_contig67714.16341.1|Name=mRNA_M-pyrifera_M_contig67714.16341.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig67714:369..1238- (Macrocystis pyrifera P11B4 male)
AGGACTGATTTAAGTGGTCCGCTGCATGACTCCTTTTGGTCTATTCCAAC
GCTTCAACATCTTGATTTGTCATACATCCCACTCGGAGATACAAATGTGA
GTGCTTCTCGGATCAAAGCACCGCTTCAATCGCTACGACTTGCACATACT
GGGGTATCGACTGCACTGCTTCGATCTTTGTGTTCTGCAGACTCCCCACT
TCTTCCAACGTTGCGAGTCCTTGATATGAGCTTTTCCAACTTGCGTGATG
AGATTCCAGATTGTATTGGCAACTTTTCAGCATTGACTGAGCTTGATTTG
GGAAGCAACGATTTGGAAGGATATGTTCCTGCAACAATTTCAGCGCTGCA
GCAATTGGAGACGGTTGACCTTTCCAGAAACAAGTTAGAAGGACTGAAAG
ATATGGATGTATGTGCTATGCCTGTCTTGCGTCGTTTGTACTTGGGCAAC
AATGACTTGCGTGAGCTTCCAAAGATTACTTGTGCCAGTTGTACTGGACT
TGATCTTGAAATCCTTGACCTCTCCTCCAATAACCTCCAAGCACCCCAAG
TTGCGTCATTCCTCCCTATCGTTGGTCAAACACAAGTTGTATCCCTGCGC
TCCAACATCCTCACTGTCCTTGATTTTGACCGGATCTACGAATGTTCCCC
GGTCCCAGAAGATGCGGCATTACGCACCCTCGATGTGTCACAGAATCGCC
TAAGCGCTCTCAATTGTGTCAAGGGACCTTCTTCGCATGGATCGTACGAT
TTCTCCATCTCCACTCTTCTCGCATCTGGAAATGACCTAACATCTGATCA
AGCTGGAGATTGCCTTGCAACTGGAACTTGGCCAGTGTTGCAAGAGGTTG
ACTTGAGCTCCAATCAACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67714:369..1238-

>mRNA_M-pyrifera_M_contig67714.16341.1 ID=mRNA_M-pyrifera_M_contig67714.16341.1|Name=mRNA_M-pyrifera_M_contig67714.16341.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1740bp|location=Sequence derived from alignment at M-pyrifera_M_contig67714:369..1238- (Macrocystis pyrifera P11B4 male)
AGGACTGATTTAAGTGGTCCGCTGCATGACTCCTTTTGGTCTATTCCAAC
GCTTCAACATCTTGATTTGTCATACATCCCACTCGGAGATACAAATGTGA
GTGCTTCTCGGATCAAAGCACCGCTTCAATCGCTACGACTTGCACATACT
GGGGTATCGACTGCACTGCTTCGATCTTTGTGTTCTGCAGACTCCCCACT
TCTTCCAACGTTGCGAGTCCTTGATATGAGCTTTTCCAACTTGCGTGATG
AGATTCCAGATTGTATTGGCAACTTTTCAGCATTGACTGAGCTTGATTTG
GGAAGCAACGATTTGGAAGGATATGTTCCTGCAACAATTTCAGCGCTGCA
GCAATTGGAGACGGTTGACCTTTCCAGAAACAAGTTAGAAGGACTGAAAG
ATATGGATGTATGTGCTATGCCTGTCTTGCGTCGTTTGTACTTGGGCAAC
AATGACTTGCGTGAGCTTCCAAAGATTACTTGTGCCAGTTGTACTGGACT
TGATCTTGAAATCCTTGACCTCTCCTCCAATAACCTCCAAGCACCCCAAG
TTGCGTCATTCCTCCCTATCGTTGGTCAAACACAAGTTGTATCCCTGCGC
TCCAACATCCTCACTGTCCTTGATTTTGACCGGATCTACGAATGTTCCCC
GGTCCCAGAAGATGCGGCATTACGCACCCTCGATGTGTCACAGAATCGCC
TAAGCGCTCTCAATTGTGTCAAGGGACCTTCTTCGCATGGATCGTACGAT
TTCTCCATCTCCACTCTTCTCGCATCTGGAAATGACCTAACATCTGATCA
AGCTGGAGATTGCCTTGCAACTGGAACTTGGCCAGTGTTGCAAGAGGTTG
ACTTGAGCTCCAATCAACTCAGGACTGATTTAAGTGGTCCGCTGCATGAC
TCCTTTTGGTCTATTCCAACGCTTCAACATCTTGATTTGTCATACATCCC
ACTCGGAGATACAAATGTGAGTGCTTCTCGGATCAAAGCACCGCTTCAAT
CGCTACGACTTGCACATACTGGGGTATCGACTGCACTGCTTCGATCTTTG
TGTTCTGCAGACTCCCCACTTCTTCCAACGTTGCGAGTCCTTGATATGAG
CTTTTCCAACTTGCGTGATGAGATTCCAGATTGTATTGGCAACTTTTCAG
CATTGACTGAGCTTGATTTGGGAAGCAACGATTTGGAAGGATATGTTCCT
GCAACAATTTCAGCGCTGCAGCAATTGGAGACGGTTGACCTTTCCAGAAA
CAAGTTAGAAGGACTGAAAGATATGGATGTATGTGCTATGCCTGTCTTGC
GTCGTTTGTACTTGGGCAACAATGACTTGCGTGAGCTTCCAAAGATTACT
TGTGCCAGTTGTACTGGACTTGATCTTGAAATCCTTGACCTCTCCTCCAA
TAACCTCCAAGCACCCCAAGTTGCGTCATTCCTCCCTATCGTTGGTCAAA
CACAAGTTGTATCCCTGCGCTCCAACATCCTCACTGTCCTTGATTTTGAC
CGGATCTACGAATGTTCCCCGGTCCCAGAAGATGCGGCATTACGCACCCT
CGATGTGTCACAGAATCGCCTAAGCGCTCTCAATTGTGTCAAGGGACCTT
CTTCGCATGGATCGTACGATTTCTCCATCTCCACTCTTCTCGCATCTGGA
AATGACCTAACATCTGATCAAGCTGGAGATTGCCTTGCAACTGGAACTTG
GCCAGTGTTGCAAGAGGTTGACTTGAGCTCCAATCAACTC
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