mRNA_M-pyrifera_M_contig67669.16333.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67669.16333.1
Unique NamemRNA_M-pyrifera_M_contig67669.16333.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67669.16333.1 vs. uniprot
Match: A0A6H5JKR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.270e-9
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 KALDIAKEGGIRYAFLIYNASVHAWNVLRTALRTG 105
            KALDIA EGG RYAFL++N SVHAWN+LR AL  G
Sbjct:  225 KALDIATEGGPRYAFLVHNVSVHAWNILRPALTAG 259
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BLAST of mRNA_M-pyrifera_M_contig67669.16333.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.400e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 KALDIAKEGGIRYAFLIYNASVHAWNVLRTALRTG 105
            +ALD+A EGG RYAFL++N SVHAWNVLR AL  G
Sbjct:  144 QALDVAIEGGPRYAFLVHNVSVHAWNVLRPALTAG 178
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67669.16333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKR4_9PHAE5.270e-974.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G359_ECTSI3.400e-871.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67669contigM-pyrifera_M_contig67669:489..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.3248646-CDS-M-pyrifera_M_contig67669:488..5931622816567.3248646-CDS-M-pyrifera_M_contig67669:488..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67669 489..593 +
1692278051.093358-CDS-M-pyrifera_M_contig67669:488..5931692278051.093358-CDS-M-pyrifera_M_contig67669:488..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67669 489..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67669.16333.1prot_M-pyrifera_M_contig67669.16333.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67669 489..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67669.16333.1

>prot_M-pyrifera_M_contig67669.16333.1 ID=prot_M-pyrifera_M_contig67669.16333.1|Name=mRNA_M-pyrifera_M_contig67669.16333.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
KALDIAKEGGIRYAFLIYNASVHAWNVLRTALRTG
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mRNA from alignment at M-pyrifera_M_contig67669:489..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67669.16333.1 ID=mRNA_M-pyrifera_M_contig67669.16333.1|Name=mRNA_M-pyrifera_M_contig67669.16333.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig67669:489..593+ (Macrocystis pyrifera P11B4 male)
AAGGCGCTCGACATTGCCAAGGAAGGGGGGATCCGGTACGCCTTCCTGAT
CTACAACGCCTCGGTGCACGCGTGGAACGTTCTGCGGACCGCTCTGAGAA
CCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67669:489..593+

>mRNA_M-pyrifera_M_contig67669.16333.1 ID=mRNA_M-pyrifera_M_contig67669.16333.1|Name=mRNA_M-pyrifera_M_contig67669.16333.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig67669:489..593+ (Macrocystis pyrifera P11B4 male)
AAGGCGCTCGACATTGCCAAGGAAGGGGGGATCCGGTACGCCTTCCTGAT
CTACAACGCCTCGGTGCACGCGTGGAACGTTCTGCGGACCGCTCTGAGAA
CCGGGAAGGCGCTCGACATTGCCAAGGAAGGGGGGATCCGGTACGCCTTC
CTGATCTACAACGCCTCGGTGCACGCGTGGAACGTTCTGCGGACCGCTCT
GAGAACCGGG
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