mRNA_M-pyrifera_M_contig67635.16328.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67635.16328.1
Unique NamemRNA_M-pyrifera_M_contig67635.16328.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig67635.16328.1 vs. uniprot
Match: A0A6H5KY69_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY69_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.750e-13
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 KAMASYSAAVDFLR-----ATEGGGIDGIDGVAAEDMAAMQALLEEDERSPRTFAMAEDESLDYD 180
            +AMASY+AAVD  R     A   GG  G+DGVA EDMAAMQAL+EEDE +P  FAMAEDESLDYD
Sbjct:  217 EAMASYAAAVDNFRSAAAAARAAGG--GLDGVAPEDMAAMQALMEEDENNPDAFAMAEDESLDYD 279
[Close]
BLAST of mRNA_M-pyrifera_M_contig67635.16328.1 vs. uniprot
Match: D7FY13_ECTSI (Ring finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY13_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.040e-12
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 KAMASYSAAVDFLRATEGGGID---GIDGVAAEDMAAMQALLEEDERSPRTFAMAEDESLDYD 180
            +AMASY+AAVD  R+          G++GVA EDMAAMQAL+EEDE +P  FAMAEDESLDYD
Sbjct:   47 EAMASYAAAVDNFRSAAXXXXXXXGGMEGVAPEDMAAMQALMEEDENNPDAFAMAEDESLDYD 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67635.16328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY69_9PHAE2.750e-1367.69RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FY13_ECTSI1.040e-1263.49Ring finger protein n=1 Tax=Ectocarpus siliculosus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67635contigM-pyrifera_M_contig67635:827..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D7FY13
Preferred nameRLIM
KEGG koko:K15701,ko:K16271
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007549,GO:0008150,GO:0008152,GO:0009048,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0040029,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043433,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0060816,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1900095,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-08_004670.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size180
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.1029072-UTR-M-pyrifera_M_contig67635:826..8321622816567.1029072-UTR-M-pyrifera_M_contig67635:826..832Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67635 827..832 +
1692278050.9823549-UTR-M-pyrifera_M_contig67635:826..8321692278050.9823549-UTR-M-pyrifera_M_contig67635:826..832Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig67635 827..832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.114917-CDS-M-pyrifera_M_contig67635:832..10061622816567.114917-CDS-M-pyrifera_M_contig67635:832..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67635 833..1006 +
1692278050.9941814-CDS-M-pyrifera_M_contig67635:832..10061692278050.9941814-CDS-M-pyrifera_M_contig67635:832..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67635 833..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67635.16328.1prot_M-pyrifera_M_contig67635.16328.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67635 833..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67635.16328.1

>prot_M-pyrifera_M_contig67635.16328.1 ID=prot_M-pyrifera_M_contig67635.16328.1|Name=mRNA_M-pyrifera_M_contig67635.16328.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MASYSAAVDFLRATEGGGIDGIDGVAAEDMAAMQALLEEDERSPRTFAMA
EDESLDYD
back to top

mRNA from alignment at M-pyrifera_M_contig67635:827..1006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67635.16328.1 ID=mRNA_M-pyrifera_M_contig67635.16328.1|Name=mRNA_M-pyrifera_M_contig67635.16328.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig67635:827..1006+ (Macrocystis pyrifera P11B4 male)
AAGGCGATGGCGTCTTACTCCGCTGCGGTGGACTTTTTGCGCGCGACGGA
AGGCGGAGGAATCGATGGCATCGACGGGGTAGCGGCGGAAGACATGGCGG
CGATGCAGGCGCTGCTGGAGGAGGACGAGCGGAGCCCGAGGACCTTCGCG
ATGGCAGAGGACGAATCGCTTGACTACGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig67635:827..1006+

>mRNA_M-pyrifera_M_contig67635.16328.1 ID=mRNA_M-pyrifera_M_contig67635.16328.1|Name=mRNA_M-pyrifera_M_contig67635.16328.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig67635:827..1006+ (Macrocystis pyrifera P11B4 male)
ATGGCGTCTTACTCCGCTGCGGTGGACTTTTTGCGCGCGACGGAAGGCGG
AGGAATCGATGGCATCGACGGGGTAGCGGCGGAAGACATGGCGGCGATGC
AGGCGCTGCTGGAGGAGGACGAGCGGAGCCCGAGGACCTTCGCGATGGCA
GAGGACGAATCGCTTGACTACGATATGGCGTCTTACTCCGCTGCGGTGGA
CTTTTTGCGCGCGACGGAAGGCGGAGGAATCGATGGCATCGACGGGGTAG
CGGCGGAAGACATGGCGGCGATGCAGGCGCTGCTGGAGGAGGACGAGCGG
AGCCCGAGGACCTTCGCGATGGCAGAGGACGAATCGCTTGACTACGAT
back to top