mRNA_M-pyrifera_M_contig675.16298.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig675.16298.1
Unique NamemRNA_M-pyrifera_M_contig675.16298.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 7.610e-42
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 3 
Query:    3 KMSAVMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSDQAQTFVDKDPYNTAGLIASYQIRDYMGVVGTLL 275
            K++AV+YTYVDGM+++R PYR+DHL LLK MTEEGTCLLGGAF EPCDGAVLLFS  ++AQ FVDKDPYNT GL+  YQIRDYM VVGT+L
Sbjct:   92 KLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQIRDYMAVVGTML 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 8.270e-24
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 3 
Query:   15 VMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSDQAQTFVDKDPYNTAGLIASYQIRDYMGVVGTLL 275
            + YTYV+GM+E+R P+R  HL +L  +T++G C+LGGAF  P DGA+LLF     A+TF  +DPY+ AGLI  + IRDY  V GT++
Sbjct:    6 LQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIM 92
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BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A7S3JUF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUF8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.900e-22
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 3 
Query:    3 KMSAVMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDS----DQAQTFVDKDPYNTAGLIASYQIRDYMGVVGTL 272
            K  A+ YTYVDGM+E+R PYR  HL  LK M + G C+LGGAF +PCDGAV+LF  S    ++ + F + DPY    L+ S+ + +YM VVG+L
Sbjct:   53 KFYALRYTYVDGMLEKRQPYRQAHLDGLKKMADLGKCVLGGAFNDPCDGAVVLFDSSTTTKEEIEAFANVDPYVVNNLVPSWSVSEYMAVVGSL 146
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BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: UPI000833C2E6 (YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH001 TaxID=1581011 RepID=UPI000833C2E6)

HSP 1 Score: 86.3 bits (212), Expect = 1.230e-17
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 
Query:   15 VMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSDQAQT--FVDKDPYNTAGLIASYQIRDYMGVVGTLL 275
            + Y YVD ++E+R P+R  HLAL     E G  LLGGAFA P DGA+L+F   ++AQ   FV +DPY   GL+ S+ IR++  VVG  L
Sbjct:    5 LFYNYVDNIIEKRVPFREAHLALATSFVESGELLLGGAFANPADGAILIFKVENKAQVEAFVKQDPYVQNGLVTSWNIREWSVVVGAAL 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A418VAY8_9DEIO (YCII domain-containing protein n=2 Tax=Deinococcus TaxID=1298 RepID=A0A418VAY8_9DEIO)

HSP 1 Score: 85.1 bits (209), Expect = 3.320e-17
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 3 
Query:   21 YTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSDQAQTFVDKDPYNTAGLIASYQIRDYMGVVGTLLQ 278
            + Y D  + RR PYR+DHLAL +     G  LLGGA AEP DGAVL+F+ ++ A TF + DPY  +GL+ S +IR +  VVG L++
Sbjct:    9 FAYADHAV-RREPYRADHLALAREAAARGELLLGGALAEPMDGAVLIFTSAEAASTFAEADPYVQSGLVKSREIRAWTTVVGALVK 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A5D3WIG8_9DELT (YCII domain-containing protein n=1 Tax=Geothermobacter ehrlichii TaxID=213224 RepID=A0A5D3WIG8_9DELT)

HSP 1 Score: 83.6 bits (205), Expect = 1.280e-16
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 3 
Query:   15 VMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLF--SDSDQAQTFVDKDPYNTAGLIASYQIRDYMGVVGT 269
            + Y YV+ ++ERR+PYR +HLAL +   + G  +LGGA+A+P DGA L+F     D+ + FV +DPY   G++  ++IR++  VVGT
Sbjct:    5 LFYDYVENVVERRAPYREEHLALAREFLDRGELVLGGAYADPVDGAALVFRVEARDRVEEFVRRDPYVAHGIVTGWRIREWTVVVGT 91
[Close]
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A7S1UAB8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAB8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.570e-16
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:    3 KMSAVMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSD----QAQTFVDKDPYNTAGLIASYQIRDYMGVVGTLLQK 281
            K   + YTYV+ M+ERR PYR++HLA  K  +E+G C + GA+ +PCDGAVLLF+         + F   DPY TAGL A + +  Y  V GTL+ K
Sbjct:   70 KYIVLRYTYVENMLERRGPYRAEHLANAKAASEKGWCAIAGAY-DPCDGAVLLFNADKCSVADVENFAKADPYVTAGL-AQWNVVHYNAVCGTLMSK 164
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BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: UPI000E0A50C6 (YciI-like protein n=1 Tax=Pleomorphovibrio marinus TaxID=2164132 RepID=UPI000E0A50C6)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-15
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 3 
Query:    3 KMSAVMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSDQ--AQTFVDKDPYNTAGLIASYQIRDYMGVVG 266
            K   + Y  V G +E+R PYR +HLAL +   E G  L+GGA   P D AVL+F   D+  A  FV+KDPY   GL+ SY+IR++  VVG
Sbjct:    4 KFFLLTYDTVLGYLEKRKPYRKEHLALAREFYENGHLLMGGALVSPADKAVLIFKGKDEGIATEFVNKDPYVKMGLVRSYEIREWNVVVG 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A059LFT5_9CHLO (YCII domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LFT5_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 1.320e-15
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:   15 VMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSD--SDQAQTFVDKDPYNTAGLIASYQIRDYMGVVG 266
            ++Y YVDGM+E+R+P+R  HL L   M++EG  ++GGA  +P D  +L+F +   ++ ++F  +DPY    L+ S+++R YM VVG
Sbjct:   44 LIYNYVDGMLEKRTPFRDAHLKLAGGMSDEGKLMMGGALTDPVDTGILIFRNMTKEEVESFAKRDPYVLNNLVTSWKVRQYMSVVG 129
[Close]
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Match: A0A1A6C2B1_9GAMM (YCII domain-containing protein n=2 Tax=Acidihalobacter TaxID=1765964 RepID=A0A1A6C2B1_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 3.360e-15
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 3 
Query:   15 VMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAVLLFSDSDQA--QTFVDKDPYNTAGLIASYQIRDYMGVVGTLL 275
            + Y YV+ ++ERR+P+R  HLAL +     G  LLGGA+A+P DGA L+F   D++  ++FV  DPY    L+  ++IR++  VVG+ L
Sbjct:    5 LFYDYVENIIERRTPFRQAHLALTEEYVHRGELLLGGAYADPADGAALIFKTEDRSRVESFVANDPYVRNRLVTGWRIREWTVVVGSAL 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig675.16298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ2_ECTSI7.610e-4275.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJU7_9STRA8.270e-2451.72YCII domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3JUF8_9STRA9.900e-2250.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI000833C2E61.230e-1748.31YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH... [more]
A0A418VAY8_9DEIO3.320e-1748.84YCII domain-containing protein n=2 Tax=Deinococcus... [more]
A0A5D3WIG8_9DELT1.280e-1643.68YCII domain-containing protein n=1 Tax=Geothermoba... [more]
A0A7S1UAB8_9STRA1.570e-1646.39Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
UPI000E0A50C61.290e-1546.67YciI-like protein n=1 Tax=Pleomorphovibrio marinus... [more]
A0A059LFT5_9CHLO1.320e-1540.70YCII domain-containing protein n=1 Tax=Helicospori... [more]
A0A1A6C2B1_9GAMM3.360e-1542.70YCII domain-containing protein n=2 Tax=Acidihaloba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig675contigM-pyrifera_M_contig675:24002..26204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.1e-34
Seed eggNOG ortholog2880.D8LEJ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YCII-related domain
EggNOG OGs2DZF9@1,2S6ZJ@2759
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-21_004450.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size953
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig675.16298.1prot_M-pyrifera_M_contig675.16298.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig675 24007..25535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.3611662-UTR-M-pyrifera_M_contig675:24001..240061622816565.3611662-UTR-M-pyrifera_M_contig675:24001..24006Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig675 24002..24006 +
1692278049.91094-UTR-M-pyrifera_M_contig675:24001..240061692278049.91094-UTR-M-pyrifera_M_contig675:24001..24006Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig675 24002..24006 +
1622816565.4125109-UTR-M-pyrifera_M_contig675:25535..262041622816565.4125109-UTR-M-pyrifera_M_contig675:25535..26204Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig675 25536..26204 +
1692278049.968578-UTR-M-pyrifera_M_contig675:25535..262041692278049.968578-UTR-M-pyrifera_M_contig675:25535..26204Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig675 25536..26204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816565.3749568-CDS-M-pyrifera_M_contig675:24006..241211622816565.3749568-CDS-M-pyrifera_M_contig675:24006..24121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 24007..24121 +
1692278049.9311826-CDS-M-pyrifera_M_contig675:24006..241211692278049.9311826-CDS-M-pyrifera_M_contig675:24006..24121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 24007..24121 +
1622816565.3851976-CDS-M-pyrifera_M_contig675:24684..248031622816565.3851976-CDS-M-pyrifera_M_contig675:24684..24803Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 24685..24803 +
1692278049.9438784-CDS-M-pyrifera_M_contig675:24684..248031692278049.9438784-CDS-M-pyrifera_M_contig675:24684..24803Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 24685..24803 +
1622816565.3970087-CDS-M-pyrifera_M_contig675:25490..255351622816565.3970087-CDS-M-pyrifera_M_contig675:25490..25535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 25491..25535 +
1692278049.9549766-CDS-M-pyrifera_M_contig675:25490..255351692278049.9549766-CDS-M-pyrifera_M_contig675:25490..25535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig675 25491..25535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig675.16298.1

>prot_M-pyrifera_M_contig675.16298.1 ID=prot_M-pyrifera_M_contig675.16298.1|Name=mRNA_M-pyrifera_M_contig675.16298.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MSAVMYTYVDGMMERRSPYRSDHLALLKVMTEEGTCLLGGAFAEPCDGAV
LLFSDSDQAQTFVDKDPYNTAGLIASYQIRDYMGVVGTLLQK*
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mRNA from alignment at M-pyrifera_M_contig675:24002..26204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig675.16298.1 ID=mRNA_M-pyrifera_M_contig675.16298.1|Name=mRNA_M-pyrifera_M_contig675.16298.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2203bp|location=Sequence derived from alignment at M-pyrifera_M_contig675:24002..26204+ (Macrocystis pyrifera P11B4 male)
CGAAGATGTCCGCGGTTATGTACACGTACGTGGACGGCATGATGGAGAGA
CGCTCGCCTTACCGGTCGGATCACCTCGCCTTGCTCAAGGTTATGACAGA
AGAGGGGACATGCCTGCTTGGTGAGGTGCCGCTAAGAGCTGCGTTCCGCG
CTCAGTCCGCACAGTATTCGCGTTCATAGCAAGTTGGCGCAAAAGCCTGG
TACATCACAGCTTGTAGACATGTTTTTGTTGATTAGAAAACGAAAATACA
ATCTGTTGGTCAAAAGGGGCAACCTGTGATACAGGCTGTTCAGTCAGTGC
TGACTGGATAGGTTAGTAGTCTACCCTTCTGATCAACTCCTTTTGTTGGT
TGAACTTGTTTAATATTTGTTTTCGCAGACTGTATGATGCTGTGAGGGTT
ATTATGTTATTATGCGCGGTCAGATTGCAACCGCTGCCATTGTCAACCTC
GTGAACCTTGTGACCCCATCGCCTCCACGCTCGAAGCCCTTCTACCCCCC
GCCCCCCCCTGTACCGCACCAATCAAAAGATGGCAACTACGTTCATGCAT
GATATCGAGTACACTCCCCCCCCCGTAGCCATTGATCGAATGACTAACGC
AAGCAACAAATCAATTACAGACGAAGTTGGAGTGTTCGCACATGAAAAAA
AATCTCTTCCGGTCTCGGTCTTCGCGCGAACAGGCGGAGCATTCGCGGAG
CCTTGCGACGGAGCCGTCCTCCTATTCTCCGACTCAGACCAAGCCCAAAC
TTTCGTGGATAAAGACCCTTACAACACGGCTGGGCTCATCGCCAGCTACC
AGGTGCTCGTTTCTTTTTCTGCTTTGGTAGCGCTCCGTGCGAATAGACAC
CGCTTTGGAATTACAGTTACAAAAATGAGCAACAGCAGTCTGTGCGCGAC
CTATTCACCGACGAAAGAGCATACTGTACCTCTAATCGTCCAGAAGGAAA
AAACGACCAGATAAAAAATGGATATCTACTCAGGAATATATCGCTTCGAT
TTATAACCAGGCATCACGAATGTCCAGCAGTGTGCGCTGTTGATCAAAAC
GTGGGTCGATAAAAGCTGGCATCACCTCGTGGGTACAACTCCTGGGCGCA
GTCAGAGGTGCAGTTTTTTTTCACTCGAGTCGGCACCTTATTTACAGCAC
GACTTTGTGTTGGTGGTGGTTAGATTGCTTGTATTTTGTCTTCGTGGTTA
TCGACGTTGTCTAGAAGCCCGAGCCTCAGTAAGGTTGTGTGGGCAATACA
CATCCACCCGGCCGCAGATCGGCCGGCATTCCTCCGGGCGGCGAGCAGAA
TAACGGTCGCTCAAAGTCATTAAGAACGCTCGGCAGTTCCGTCCAGTCAT
ATTCTACCGCAAACGCAAGATGTCTGTCTGCTAGATGGTCAGGCGAGATG
CGACATATACCTCTTGAACATCTGGCTCACTGCTGTGCGATTGCGTGCGT
CCTCTTGCGATTTGCCCGGCATCCCACAAACATCTACAGATTCGCGACTA
CATGGGCGTCGTGGGCACGTTGCTCCAAAAGTGAGCAAGCGGTGGCGGCA
CCGGGGAGGGGTTTGGGCTCGCCCACCCTTCGGCTAGTCAAGCCGGCCTC
GTATAAACGTGGCCGAATTTTGATCGGCGTGTGACGCGGACGAATATGCT
TCTGTCTCGCCGATGTTGCTCTGTTCCCCACTATTATAGTTGGTTTCCGG
AGGGTGGTGGAGGTATTGGTGGTGTTTTGACACCCTCGAGGTCGTTGGTA
GAGACTGATGTTGTTCATCGCGAAGCCGACGATATATTTTTACATGAAGT
ATTTTTCGCTTAAAGTATATTTGTTATCGTACACAAGTGTACAGCAGTGC
ATTTTTGGTTGTAGTTTTTACTACAACGATCATGGTAATTATGGATGTGG
GGGCACTCGGGAAGGGGGGCGCGCGGACAGTAGTGGTGACTGATTCGGCC
CTTGTGATTTCAACTTTTTACGGTACATTTGTTTCTGTTGCACTTTGCGG
CGTCGTCAGCCTTTTCGACGCTGACATAGAAAATTCGACTTCAAGGTTTC
AGCAAGTTAAACACGTTTGGATGGGGGCCACCGCTCGTGTCTTTGCGTAC
AGAATTGGATCCCTATGTTCGCACGTGTGCTCGTGCTGTCACACCACCGA
CAACCTCGCCATTGTCGACTGCGACTTCGCCTTTGTCAACTGCGAAAAAA
CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig675:24002..26204+

>mRNA_M-pyrifera_M_contig675.16298.1 ID=mRNA_M-pyrifera_M_contig675.16298.1|Name=mRNA_M-pyrifera_M_contig675.16298.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig675:24002..26204+ (Macrocystis pyrifera P11B4 male)
ATGTCCGCGGTTATGTACACGTACGTGGACGGCATGATGGAGAGACGCTC
GCCTTACCGGTCGGATCACCTCGCCTTGCTCAAGGTTATGACAGAAGAGG
GGACATGCCTGCTTGATGTCCGCGGTTATGTACACGTACGTGGACGGCAT
GATGGAGAGACGCTCGCCTTACCGGTCGGATCACCTCGCCTTGCTCAAGG
TTATGACAGAAGAGGGGACATGCCTGCTTGGCGGAGCATTCGCGGAGCCT
TGCGACGGAGCCGTCCTCCTATTCTCCGACTCAGACCAAGCCCAAACTTT
CGTGGATAAAGACCCTTACAACACGGCTGGGCTCATCGCCAGCTACCAGG
CGGAGCATTCGCGGAGCCTTGCGACGGAGCCGTCCTCCTATTCTCCGACT
CAGACCAAGCCCAAACTTTCGTGGATAAAGACCCTTACAACACGGCTGGG
CTCATCGCCAGCTACCAGATTCGCGACTACATGGGCGTCGTGGGCACGTT
GCTCCAAAAGTGAATTCGCGACTACATGGGCGTCGTGGGCACGTTGCTCC
AAAAGTGA
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