mRNA_M-pyrifera_M_contig6740.16287.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6740.16287.1
Unique NamemRNA_M-pyrifera_M_contig6740.16287.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6740.16287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6740contigM-pyrifera_M_contig6740:7613..8166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6740.16287.1prot_M-pyrifera_M_contig6740.16287.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6740 7709..8014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.5891693-UTR-M-pyrifera_M_contig6740:7612..77081622816564.5891693-UTR-M-pyrifera_M_contig6740:7612..7708Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6740 7613..7708 +
1692278049.4305582-UTR-M-pyrifera_M_contig6740:7612..77081692278049.4305582-UTR-M-pyrifera_M_contig6740:7612..7708Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6740 7613..7708 +
1622816564.614558-UTR-M-pyrifera_M_contig6740:8014..81661622816564.614558-UTR-M-pyrifera_M_contig6740:8014..8166Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6740 8015..8166 +
1692278049.4531782-UTR-M-pyrifera_M_contig6740:8014..81661692278049.4531782-UTR-M-pyrifera_M_contig6740:8014..8166Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6740 8015..8166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.6019676-CDS-M-pyrifera_M_contig6740:7708..80141622816564.6019676-CDS-M-pyrifera_M_contig6740:7708..8014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6740 7709..8014 +
1692278049.442264-CDS-M-pyrifera_M_contig6740:7708..80141692278049.442264-CDS-M-pyrifera_M_contig6740:7708..8014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6740 7709..8014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6740.16287.1

>prot_M-pyrifera_M_contig6740.16287.1 ID=prot_M-pyrifera_M_contig6740.16287.1|Name=mRNA_M-pyrifera_M_contig6740.16287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MTIAQKSTRTCHLISYGQASKTSILVPQNWHHPQTSILKLQNWYHSKIIM
LLMLTNQYTGTIKKISMVPFTDQYTGTIQKTSMLVLSTQKHIFILVYIPL
T*
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mRNA from alignment at M-pyrifera_M_contig6740:7613..8166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6740.16287.1 ID=mRNA_M-pyrifera_M_contig6740.16287.1|Name=mRNA_M-pyrifera_M_contig6740.16287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=554bp|location=Sequence derived from alignment at M-pyrifera_M_contig6740:7613..8166+ (Macrocystis pyrifera P11B4 male)
CGTTCAGCCAATTTTTTGTCTCTTCAGATACACTGGCGCGTGGTCTTATC
GTATACAGTATAGCGCTTTATTGTGCTAACCCCCCGCCCAAGGTCGATGA
CAATTGCCCAGAAATCAACGCGAACCTGCCACTTGATATCCTACGGGCAA
GCTTCCAAAACCAGTATACTGGTACCACAAAACTGGCACCATCCACAAAC
CAGTATACTGAAACTACAAAACTGGTACCATTCAAAGATCATCATGTTGT
TAATGCTCACAAACCAGTACACTGGTACCATTAAAAAAATCAGCATGGTA
CCGTTCACAGACCAGTATACTGGTACCATCCAAAAAACCAGCATGTTGGT
ACTGTCCACACAGAAGCATATTTTCATACTGGTATATATACCACTAACAT
GATATATCTACCACTTACGACATGCACGGCAACGTCCACGGCGCCATGCG
ATGAACTTGTCCACGCCAGTATTTCTAACTGAGTAGGGAACAAGTGCTTA
CCACACGACGACCAACGACGACCAACCAGCCCGCTTCGGCATTACCAGCA
ACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6740:7613..8166+

>mRNA_M-pyrifera_M_contig6740.16287.1 ID=mRNA_M-pyrifera_M_contig6740.16287.1|Name=mRNA_M-pyrifera_M_contig6740.16287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig6740:7613..8166+ (Macrocystis pyrifera P11B4 male)
ATGACAATTGCCCAGAAATCAACGCGAACCTGCCACTTGATATCCTACGG
GCAAGCTTCCAAAACCAGTATACTGGTACCACAAAACTGGCACCATCCAC
AAACCAGTATACTGAAACTACAAAACTGGTACCATTCAAAGATCATCATG
TTGTTAATGCTCACAAACCAGTACACTGGTACCATTAAAAAAATCAGCAT
GGTACCGTTCACAGACCAGTATACTGGTACCATCCAAAAAACCAGCATGT
TGGTACTGTCCACACAGAAGCATATTTTCATACTGGTATATATACCACTA
ACATGAATGACAATTGCCCAGAAATCAACGCGAACCTGCCACTTGATATC
CTACGGGCAAGCTTCCAAAACCAGTATACTGGTACCACAAAACTGGCACC
ATCCACAAACCAGTATACTGAAACTACAAAACTGGTACCATTCAAAGATC
ATCATGTTGTTAATGCTCACAAACCAGTACACTGGTACCATTAAAAAAAT
CAGCATGGTACCGTTCACAGACCAGTATACTGGTACCATCCAAAAAACCA
GCATGTTGGTACTGTCCACACAGAAGCATATTTTCATACTGGTATATATA
CCACTAACATGA
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