mRNA_M-pyrifera_M_contig67358.16276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67358.16276.1
Unique NamemRNA_M-pyrifera_M_contig67358.16276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A1P6BWR2_BRUMA (BMA-IMB-3, isoform e n=13 Tax=Onchocercidae TaxID=6296 RepID=A0A1P6BWR2_BRUMA)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-14
Identity = 68/227 (29.96%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    4 EQLEARLENHTEYVSGLVDSVGWTVKFHARLGSLEPLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGML-RFDI--PEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAE 675
            E L+  LE  T  ++ + D +    K + +  +L P    +      L+   R+   +Q A C++DD++E+GGE A       F   + +AL      +RQSAAYG G+  +H G +    A   A+  L  M+ R D    EEG+ +A ENA SA+ K  ++ +    V+ +  + T L+ LP   D  E+  V  ++ + + + +PL+LGE+ S LPR+L  + +
Sbjct:  861 EALKEELEEETGVLARISDVIHCLFKAYGQ--NLMPYFENLADYFIPLLDSRRYYSERQWAICIFDDVIEYGGE-ASIKYHSSFYGPMLNALSDEYPEVRQSAAYGFGIMGQHGGSNYA-QACAGALPHLANMISRVDARSTEEGN-VATENAISAVAKILKYNSSMVDVNAV--IPTFLSWLPTWDDPEEAPHVYGYFADLIESNNPLVLGENNSNLPRILTVIVQ 1080          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A1I8EUB0_WUCBA (Uncharacterized protein n=4 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A1I8EUB0_WUCBA)

HSP 1 Score: 82.0 bits (201), Expect = 6.370e-14
Identity = 73/251 (29.08%), Postives = 121/251 (48.21%), Query Frame = 1
Query:    4 EQLEARLENHTEYVSGLVDSVGWTVKFHAR--LGSLEPLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGML-RFDI--PEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAECIVDHHARTAADPEEARFDADT 741
            E L+  LE     ++ + D +    K + +  +   E L    +P    L+   R+   +Q A C++DD++E+GGE A       F   + +AL      +RQSAAYG G+  +H G +    A   A+  L  M+ R D    EEG+ +A ENA SA+ K  ++ +    V+ +  + T L+ LP   D  E+  V  ++ + + + +PL+LGE+ S LPR+L  + +             E+  FD DT
Sbjct:  446 EALKEELEEEAGVLARISDVIHCLFKAYGQNLMSYFESLADYFIP----LLDSRRYYSERQWAICIFDDVIEYGGE-ASIKYHSSFYGPMLNALSDEYPEVRQSAAYGFGIMGQHGGSNYA-QACAGALPHLANMISRSDARSTEEGN-VATENAISAVAKILKYNSSMIDVNAV--IPTFLSWLPTWDDPEEAPHVYGYFADLIESNNPLVLGENNSNLPRILTVIVQAF-----------EKGAFDDDT 676          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A0N5CXE7_THECL (Importin N-terminal domain-containing protein n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A0N5CXE7_THECL)

HSP 1 Score: 81.6 bits (200), Expect = 9.680e-14
Identity = 60/180 (33.33%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  145 LIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGML-RFDI--PEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAE 675
            L+   +H   +Q + C++DDL+E+GGE A       F   + +AL      +RQSAAYG GV  +H G ++   A   A+  L  M+ R D    EEG+ +A ENA SA+ K  ++ +    V+ +  + T L+ LP   D  E+  V  ++ + + + +P +LGE+ S LPR+L  + E
Sbjct:  872 LLESQKHYSERQWSICVFDDLIEYGGE-ASIKYYSSFYGPMIAALSDEFPEVRQSAAYGFGVMGQHGG-NIYAQACAGALPHLANMISREDARSTEEGN-IATENAISAVAKILKYNSRMVDVNAV--IPTFLSWLPIWEDPDETPHVYGYFADLIESNNPFVLGENNSNLPRLLTVIVE 1046          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A0N4UIL2_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UIL2_DRAME)

HSP 1 Score: 79.7 bits (195), Expect = 4.350e-13
Identity = 57/194 (29.38%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  109 PLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSG---LHLPPDAIEAAVNALTGMLRFDIPEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAECI 681
            P    + P  R  +   RH   +Q   CMYDDL+EFGGE A       F   + S +      +RQ+AAYG+G+   + G     L   A++   N ++        +    +A ENA SA+ K  +F +    V+ +  + T +  LP   D  ES     ++ + + + +PL+LGE+ S LPR+L  + E +
Sbjct:  894 PYFEQLEPIFRPWLSQKRHFSERQWTICMYDDLIEFGGE-ASVQYQQYFYEPLISCINDEYPEVRQAAAYGIGLMGLYGGKAYAQLCAGALQPIANMISDQAARSTTDA--LLATENAISAVAKILKFNSSMIDVNAV--IPTFVQWLPVWEDTEESPYTYDYFADLIESNNPLVLGENNSNLPRILSVMVEAL 1082          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A2P2HY83_9CRUS (Importin-5-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2HY83_9CRUS)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-12
Identity = 54/189 (28.57%), Postives = 85/189 (44.97%), Query Frame = 1
Query:  109 PLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGMLRFDIPEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAE 675
            P    ++P    L+G DR     Q   C++DD++E+GG          FL  + + L S+ G +RQ+AAYG GV A+  G    P   +     +  +   D   E +    ENA SA  K  ++ A   +VD +  +   LT LP   D  E+  V  +  + +    P +LG +   +P +L   AE
Sbjct:  860 PFFDGLVPHIVRLLGSDRSWPDHQWGLCIFDDVIEYGGPNCAQYT-DHFLEPMMTHLSSTQGEVRQAAAYGCGVLAQFGGPSFAPVFAQIIPRLVQIIQAPDSRNEANINPTENAISATTKILKYNASAINVDEV--IPVWLTFLPVWEDADEAPHVYGYLCDLVDANHPEVLGPNNERIPHILALFAE 1045          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A7S3DA11_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DA11_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 6.350e-12
Identity = 57/172 (33.14%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   64 VGWTVKFHARLGSLEPLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLH---LPPDAIEAAVNALTGMLRFDIPEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVES 570
            VG   K H   G   PL   ++    +L+G DR  + ++ A C+ DD++E  GE A S L P+F   +     + N  LRQSAAYG+G+ A+HSG     +   A+EA  + +T   R D  EE    A +NA SAL +   F+    + + +   A     +P   D+ ES
Sbjct:  839 VGVLFKTHG--GQFLPLFSPLMELFSQLVGSDRSEVQRRVAICVIDDIIEHAGESAIS-LYPQFSSILVRDCGADNEELRQSAAYGVGLLAQHSGEFFKTIQEHAVEALKSVIT---RPDAREEDSEFATDNAVSALSRVCEFQPQAVNAEEV--YAFLYNFMPLTGDEEES 1002          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A6G0UU68_9BILA (Uncharacterized protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UU68_9BILA)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-11
Identity = 67/235 (28.51%), Postives = 115/235 (48.94%), Query Frame = 1
Query:    1 EEQLEARLENHTEYVSGLVDSVGWTVKFHARLGSLEPLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGV---AAEHSGLHLPPDAIEAAVNALTGMLRFDIPE-EGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAECIVDHH 693
            +E+++  +E  TE +  + D V +   F     +   +   ++P   +LI  +R    +Q AFC++DD++EFGG +A S     F+  + + L      +RQ+AAYG+GV   +  H+  H    A+E  V  ++   R D    E   +A ENA SA+ K  +      +VD    + T L+ LP   D  E+  V  ++ + + +  P +LGE+ S LP V+  + +    HH
Sbjct:  815 QEEMKELIEQETEILGRISDLVHFL--FSTFKEAFVDIFAPVIPQFEQLIKPNRPFQDRQWAFCVFDDIIEFGGPKAASFS-GVFVEPMLNGLSDEYPEVRQAAAYGVGVMGLSPHHAYNHFLSGAVERLVAMIS---RPDSRSTEESIIATENAISAVGKILKHS---NAVDANLVIPTFLSWLPVWEDTEETPHVYDYFCDLVESNHPAVLGENNSNLPSVVNIILQAF--HH 1038          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A6F9DEQ8_9ASCI (Importin-5 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DEQ8_9ASCI)

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-9
Identity = 63/218 (28.90%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   85 HARLGS----LEPLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPE-FLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALT------------GMLRFDIPEEGDFMAVENAASALIKFARFRAD--HPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAECI 681
            HA  GS    + PL  ++LP   +L+   R    +Q A C++DD++E+ G+EA  +   E FL  + + +E ++G +RQ+A+YG+GV A+ +G     +AI+ A+  L             G L  D     D   +EN  SA+ K  + + +      +    + T L+ LP   D+ E+  V  +  + +   +P+LLGE    LP V+  LA+ +
Sbjct:  846 HALFGSHGPEIFPLFDSLLPHYAKLLEPQRPYADRQWALCVFDDVIEYTGQEA--LKYQEIFLRPMLTYIEDASGEVRQAASYGIGVMAKSAGETFA-EAIKDAIPRLRRTIEGPRGRGVQGQLAHD-----DIAPLENCISAVGKILQHQPNLVGSQAEVSALLQTWLSWLPVTEDKEEAVHVYGYVCDLIENNNPVLLGESNCNLPAVISLLADAV 1055          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A0B2VLS9_TOXCA (Importin-5 n=3 Tax=Ascaridoidea TaxID=33256 RepID=A0A0B2VLS9_TOXCA)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-9
Identity = 62/227 (27.31%), Postives = 107/227 (47.14%), Query Frame = 1
Query:    4 EQLEARLENHTEYVSGLVDSVGWTVKFHARLGSLEPLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGMLRFD---IPEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEAMGTVSPLLLGEDGSALPRVLMTLAE 675
            E L   +E  T  ++ + D +     F A      P    + P    L+   R+   +Q A C++DDL+E+GG+ +       + P + ++L      +RQ+AAYG G+  +  G      A   A+  L  M+        EEG   A ENA SA+ K  ++ +    V+ +  + T L+ LP   D  E+  V  ++ + + + +PL+LG++ S LPR+L  + E
Sbjct:  876 EALNDEIEEETGVLARISDIIH--ALFQAFGERFMPYFERLEPKFTPLLDSRRYYGERQWALCIFDDLIEYGGQSSLKYQANFYGP-MLASLSDEYPEVRQAAAYGFGIMGQCGGPAYA-QACAGALQQLAAMISQPDARSTEEG-IAATENAISAVAKILKYNSSLIDVNAV--IPTFLSWLPIWDDTDETPYVYGYFADLVESNNPLVLGDNNSNLPRILSIIVE 1095          
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Match: A0A060T7N0_BLAAD (ARAD1C23210p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T7N0_BLAAD)

HSP 1 Score: 68.6 bits (166), Expect = 2.430e-9
Identity = 48/154 (31.17%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  109 PLLGAMLPTARELIGMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPLRQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGMLRF----DIPEEGDFMAVENAASALIKFARFRADHPSVDPIPCVATALTALPFQAD 558
            P    ++P A   +  D     +  + C++DDL+E+ G E+       FLP +  AL S +  +RQ+AAYG+GVAA+H G       ++ A+NAL  +       D   E + +A ENA +A+ K  R        D    +A  + ALP  +D
Sbjct:  872 PSFDKLVPVAEAFLASDNDDC-RHWSLCVFDDLIEYTGAESWRYH-QNFLPKMVDALVSGDANVRQAAAYGIGVAAQHGG----EPYVDTALNALQILFNVVNVPDAHSEDNILATENATAAIAKILRHHGFRLGADLDAAIAKWIEALPIISD 1019          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67358.16276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1P6BWR2_BRUMA2.170e-1429.96BMA-IMB-3, isoform e n=13 Tax=Onchocercidae TaxID=... [more]
A0A1I8EUB0_WUCBA6.370e-1429.08Uncharacterized protein n=4 Tax=Wuchereria bancrof... [more]
A0A0N5CXE7_THECL9.680e-1433.33Importin N-terminal domain-containing protein n=1 ... [more]
A0A0N4UIL2_DRAME4.350e-1329.38Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A2P2HY83_9CRUS1.430e-1228.57Importin-5-like (Fragment) n=1 Tax=Hirondellea gig... [more]
A0A7S3DA11_9EUKA6.350e-1233.14Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A6G0UU68_9BILA1.150e-1128.51Uncharacterized protein n=1 Tax=Halicephalobus sp.... [more]
A0A6F9DEQ8_9ASCI1.000e-928.90Importin-5 n=1 Tax=Phallusia mammillata TaxID=5956... [more]
A0A0B2VLS9_TOXCA1.010e-927.31Importin-5 n=3 Tax=Ascaridoidea TaxID=33256 RepID=... [more]
A0A060T7N0_BLAAD2.430e-931.17ARAD1C23210p n=1 Tax=Blastobotrys adeninivorans Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67358contigM-pyrifera_M_contig67358:396..1262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.6
Seed ortholog evalue5e-15
Seed eggNOG ortholog88036.EFJ15568
Preferred nameIPO5
KEGG koko:K20222
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042277,GO:0042306,GO:0042307,GO:0042886,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046822,GO:0046824,GO:0046907,GO:0048518,GO:0050789,GO:0050896,GO:0051049,GO:0051050,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072594,GO:0090087,GO:0090316,GO:1900180,GO:1900182,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951
EggNOG free text desc.Importin-5-like
EggNOG OGs37KUA@33090,3GCVT@35493,KOG2171@1,KOG2171@2759
COG Functional cat.UY
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.7999823-CDS-M-pyrifera_M_contig67358:395..8111622816563.7999823-CDS-M-pyrifera_M_contig67358:395..811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67358 396..811 -
1692278048.941298-CDS-M-pyrifera_M_contig67358:395..8111692278048.941298-CDS-M-pyrifera_M_contig67358:395..811Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67358 396..811 -
1622816563.8140404-CDS-M-pyrifera_M_contig67358:856..12621622816563.8140404-CDS-M-pyrifera_M_contig67358:856..1262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67358 857..1262 -
1692278048.9526768-CDS-M-pyrifera_M_contig67358:856..12621692278048.9526768-CDS-M-pyrifera_M_contig67358:856..1262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67358 857..1262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67358.16276.1prot_M-pyrifera_M_contig67358.16276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67358 396..1262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67358.16276.1

>prot_M-pyrifera_M_contig67358.16276.1 ID=prot_M-pyrifera_M_contig67358.16276.1|Name=mRNA_M-pyrifera_M_contig67358.16276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
EEQLEARLENHTEYVSGLVDSVGWTVKFHARLGSLEPLLGAMLPTARELI
GMDRHPMVQQPAFCMYDDLLEFGGEEAGSILLPEFLPHVFSALESSNGPL
RQSAAYGLGVAAEHSGLHLPPDAIEAAVNALTGMLRFDIPEEGDFMAVEN
AASALIKFARFRADHPSVDPIPCVATALTALPFQADQVESRDVLRWYVEA
MGTVSPLLLGEDGSALPRVLMTLAECIVDHHARTAADPEEARFDADTLAA
IPDAFRAIEEANPDLVAATMEQLP
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mRNA from alignment at M-pyrifera_M_contig67358:396..1262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67358.16276.1 ID=mRNA_M-pyrifera_M_contig67358.16276.1|Name=mRNA_M-pyrifera_M_contig67358.16276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=867bp|location=Sequence derived from alignment at M-pyrifera_M_contig67358:396..1262- (Macrocystis pyrifera P11B4 male)
GAGGAGCAACTCGAAGCAAGGTTGGAGAATCATACAGAATATGTGAGTGG GTTGGTGGATAGTGTTGGGTGGACTGTAAAGTTCCACGCAAGACTTGGAT CTCTTGAACCACTCCTTGGTGCAATGTTGCCAACTGCACGTGAATTAATA GGAATGGATCGCCATCCCATGGTCCAGCAACCAGCATTTTGCATGTACGA TGATTTACTTGAATTTGGTGGTGAAGAAGCAGGCTCAATTCTCCTCCCCG AATTTCTCCCACATGTCTTCTCAGCTCTGGAGTCATCCAATGGTCCTCTT CGTCAAAGTGCAGCATATGGTCTTGGTGTTGCAGCTGAACATTCTGGGCT ACATCTACCTCCAGATGCCATTGAAGCGGCTGTCAACGCATTGACTGGCA TGCTTCGTTCTCATTTTGCAACCATGTCTGCACTGGAAGAAGGCGAGGAA GGATTTGACATTCCAGAAGAAGGAGATTTCATGGCTGTTGAAAACGCTGC TTCTGCTTTGATCAAATTTGCACGTTTCCGAGCAGACCACCCTTCTGTTG ACCCTATCCCATGTGTTGCAACTGCTCTCACAGCTCTTCCTTTCCAAGCA GATCAAGTTGAAAGTCGTGATGTCCTTCGATGGTATGTTGAAGCAATGGG AACAGTTTCTCCACTTCTTCTTGGAGAAGATGGATCTGCTCTTCCAAGAG TACTTATGACCCTAGCAGAATGCATTGTTGACCACCATGCACGTACTGCA GCAGATCCAGAAGAAGCACGTTTTGATGCCGATACACTTGCAGCCATCCC AGATGCTTTCCGTGCCATAGAAGAAGCAAATCCAGATCTTGTTGCAGCAA CCATGGAACAACTTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67358:396..1262-

>mRNA_M-pyrifera_M_contig67358.16276.1 ID=mRNA_M-pyrifera_M_contig67358.16276.1|Name=mRNA_M-pyrifera_M_contig67358.16276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig67358:396..1262- (Macrocystis pyrifera P11B4 male)
GAGGAGCAACTCGAAGCAAGGTTGGAGAATCATACAGAATATGTGAGTGG
GTTGGTGGATAGTGTTGGGTGGACTGTAAAGTTCCACGCAAGACTTGGAT
CTCTTGAACCACTCCTTGGTGCAATGTTGCCAACTGCACGTGAATTAATA
GGAATGGATCGCCATCCCATGGTCCAGCAACCAGCATTTTGCATGTACGA
TGATTTACTTGAATTTGGTGGTGAAGAAGCAGGCTCAATTCTCCTCCCCG
AATTTCTCCCACATGTCTTCTCAGCTCTGGAGTCATCCAATGGTCCTCTT
CGTCAAAGTGCAGCATATGGTCTTGGTGTTGCAGCTGAACATTCTGGGCT
ACATCTACCTCCAGATGCCATTGAAGCGGCTGTCAACGCATTGACTGGCA
TGCTTCGAGGAGCAACTCGAAGCAAGGTTGGAGAATCATACAGAATATGT
GAGTGGGTTGGTGGATAGTGTTGGGTGGACTGTAAAGTTCCACGCAAGAC
TTGGATCTCTTGAACCACTCCTTGGTGCAATGTTGCCAACTGCACGTGAA
TTAATAGGAATGGATCGCCATCCCATGGTCCAGCAACCAGCATTTTGCAT
GTACGATGATTTACTTGAATTTGGTGGTGAAGAAGCAGGCTCAATTCTCC
TCCCCGAATTTCTCCCACATGTCTTCTCAGCTCTGGAGTCATCCAATGGT
CCTCTTCGTCAAAGTGCAGCATATGGTCTTGGTGTTGCAGCTGAACATTC
TGGGCTACATCTACCTCCAGATGCCATTGAAGCGGCTGTCAACGCATTGA
CTGGCATGCTTCGATTTGACATTCCAGAAGAAGGAGATTTCATGGCTGTT
GAAAACGCTGCTTCTGCTTTGATCAAATTTGCACGTTTCCGAGCAGACCA
CCCTTCTGTTGACCCTATCCCATGTGTTGCAACTGCTCTCACAGCTCTTC
CTTTCCAAGCAGATCAAGTTGAAAGTCGTGATGTCCTTCGATGGTATGTT
GAAGCAATGGGAACAGTTTCTCCACTTCTTCTTGGAGAAGATGGATCTGC
TCTTCCAAGAGTACTTATGACCCTAGCAGAATGCATTGTTGACCACCATG
CACGTACTGCAGCAGATCCAGAAGAAGCACGTTTTGATGCCGATACACTT
GCAGCCATCCCAGATGCTTTCCGTGCCATAGAAGAAGCAAATCCAGATCT
TGTTGCAGCAACCATGGAACAACTTCCAGATTTGACATTCCAGAAGAAGG
AGATTTCATGGCTGTTGAAAACGCTGCTTCTGCTTTGATCAAATTTGCAC
GTTTCCGAGCAGACCACCCTTCTGTTGACCCTATCCCATGTGTTGCAACT
GCTCTCACAGCTCTTCCTTTCCAAGCAGATCAAGTTGAAAGTCGTGATGT
CCTTCGATGGTATGTTGAAGCAATGGGAACAGTTTCTCCACTTCTTCTTG
GAGAAGATGGATCTGCTCTTCCAAGAGTACTTATGACCCTAGCAGAATGC
ATTGTTGACCACCATGCACGTACTGCAGCAGATCCAGAAGAAGCACGTTT
TGATGCCGATACACTTGCAGCCATCCCAGATGCTTTCCGTGCCATAGAAG
AAGCAAATCCAGATCTTGTTGCAGCAACCATGGAACAACTTCCA
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