mRNA_M-pyrifera_M_contig6721.16256.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: D7FS37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS37_ECTSI) HSP 1 Score: 111 bits (277), Expect = 5.780e-27 Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKVVAIAAGCDFTCAVKNDGAVVCW 234
A A+ GC HTCGLLDDG+VKCFGYNNYGQLGQ ++GD +G+MG++L AVSL T V A+AAGCD TCA+ +DG V+CW
Sbjct: 135 AVAVALGCRHTCGLLDDGTVKCFGYNNYGQLGQGTTENMGDDAGEMGDDLPAVSLDGT-VSAVAAGCDHTCALMDDGTVMCW 215
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A6H5L2S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S4_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.380e-22 Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQDIGDKSGQMGNNLKAVSLGSTKVVAIAAGCDFTCAVKNDGAVVCW 234
A A+ AGC HTCGLLDDG+VKCFGY ++GD +G+MG++L AVSL T V A+AAGCD TCA+ +DG V+CW
Sbjct: 79 AVAVAAGCRHTCGLLDDGTVKCFGYTT--GTTDNMGDDAGEMGDDLPAVSLDGT-VSAVAAGCDHTCALMDDGTVMCW 153
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN) HSP 1 Score: 89.4 bits (220), Expect = 5.090e-19 Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKVV-AIAAGCDFTCAVKNDGAVVCW 234
A AI AG +TC LLDDG+VKC+G N+ GQLGQ DIGD G+MG+NL AV LG+ + AI+AG TCA+ +DG V CW
Sbjct: 171 ATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCW 253
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A3L7WUR8_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7WUR8_9CHLR) HSP 1 Score: 88.6 bits (218), Expect = 9.610e-19 Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQD----IGDKSGQMGNNLKAVSLGSTKVVAIAAGC-----DFTCAVKNDGAVVCW 234
AK I AG HTC +LD+GS+KC+G+N GQLGQD IGD SG+MG++L A++LGS + A C D+TCA+ ++G + CW
Sbjct: 272 AKTIAAGSYHTCAILDNGSLKCWGFNASGQLGQDTTANIGDGSGEMGDSLPAINLGSGRTAVAVAACKRGDLDYTCAILDNGTLKCW 358
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A150SGB2_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150SGB2_SORCE) HSP 1 Score: 88.2 bits (217), Expect = 1.300e-18 Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 10 ITAGCSHTCGLLDDGSVKCFGYNNYGQLGQD-----IGDKSGQMGNNLKAVSLGSTKV-VAIAAGCDFTCAVKNDGAVVCW 234
I AG SHTC LLDD SVKC+GYNNYGQLG + IG + +MG+NL V+LG+ K +AIAAG TCA+ ND +V CW
Sbjct: 595 IAAGDSHTCALLDDNSVKCWGYNNYGQLGLERSISYIGRSATEMGDNLAPVNLGTGKTAIAIAAGQYHTCALLNDNSVKCW 675
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A7C1YKS1_9ACTN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YKS1_9ACTN) HSP 1 Score: 87.8 bits (216), Expect = 1.770e-18 Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKV-VAIAAGCDFTCAVKNDGAVVCW 234
A + G SH C LLD+G+VKC+G+N GQLGQ DIGD G+MG+NL ++ LG+ + VAIAAG TCA+ +DG++ CW
Sbjct: 162 AVMVVGGLSHVCALLDNGTVKCWGHNTAGQLGQGHTNDIGDNPGEMGDNLPSIDLGTGRTAVAIAAGSHHTCAILDDGSLKCW 244
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN) HSP 1 Score: 86.3 bits (212), Expect = 6.080e-18 Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTKVV-AIAAGCDFTCAVKNDGAVVCW 234
A AITAG SHTC LLD+ +VKC+G N+YGQLGQ DIGD G+MG+NL V LG+ + AI AG TCA+ ++ V CW
Sbjct: 226 ATAITAGDSHTCALLDNSTVKCWGDNSYGQLGQGTTDDIGDNPGEMGDNLPPVDLGAGRTATAITAGSFHTCALLDNNTVKCW 308
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A4Q3JH07_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q3JH07_9DELT) HSP 1 Score: 82.0 bits (201), Expect = 8.940e-18 Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLG----QDIGDKSGQMGNNLKAVSLGS-TKVVAIAAGCDFTCAVKNDGAVVCW 234
A+AI AG HTC LL+D +VKC+G+N GQLG +D GDK G+MG+ L AV LG+ KV +AA TCAV +DG++ CW
Sbjct: 55 AQAIVAGSGHTCALLNDQTVKCWGWNVAGQLGLGDAEDRGDKPGEMGDALPAVDLGAGAKVTRLAASGSHTCAVLSDGSLRCW 137
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A6I2WE64_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I2WE64_9ACTN) HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17 Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLG----QDIGDKSGQMGNNLKAVSLGSTKV-VAIAAGCDFTCAVKNDGAVVCW 234
A+AI+AG +HTC +LD+ +VKC+G YG+LG D+GD +G+MG NL AVSLG+ + +AI+AG TCAV N+G+ CW
Sbjct: 349 ARAISAGIAHTCAVLDNATVKCWGNGGYGKLGYENQNDLGDGAGEMGTNLAAVSLGTGRTALAISAGGAHTCAVLNNGSAKCW 431
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Match: A0A812QEI3_9DINO (UVR8 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QEI3_9DINO) HSP 1 Score: 84.7 bits (208), Expect = 1.400e-17 Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQ----DIGDKSGQMGNNLKAVSLGSTK-VVAIAAGCDFTCAVKNDGAVVCW 234
A+A+ AG H C LLDD SVKC+G N++GQLGQ IGD+ G+MG NL+ V LGS + +A+AAG +CA+ +D +V CW
Sbjct: 286 AQALAAGEDHACALLDDNSVKCWGKNDFGQLGQGHTRSIGDEPGEMGENLQPVDLGSNRHALAVAAGALHSCAILDDYSVKCW 368 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6721.16256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig6721.16256.1 >prot_M-pyrifera_M_contig6721.16256.1 ID=prot_M-pyrifera_M_contig6721.16256.1|Name=mRNA_M-pyrifera_M_contig6721.16256.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp AKAITAGCSHTCGLLDDGSVKCFGYNNYGQLGQDIGDKSGQMGNNLKAVSback to top mRNA from alignment at M-pyrifera_M_contig6721:2506..3160+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig6721.16256.1 ID=mRNA_M-pyrifera_M_contig6721.16256.1|Name=mRNA_M-pyrifera_M_contig6721.16256.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=655bp|location=Sequence derived from alignment at M-pyrifera_M_contig6721:2506..3160+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig6721:2506..3160+ >mRNA_M-pyrifera_M_contig6721.16256.1 ID=mRNA_M-pyrifera_M_contig6721.16256.1|Name=mRNA_M-pyrifera_M_contig6721.16256.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig6721:2506..3160+ (Macrocystis pyrifera P11B4 male)back to top |